jgi.p|Nanoce1779_2|578479, mRNA_1942 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578479
Unique NamemRNA_1942
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1167
Alignment locationscaffold_4:405621..406787 -

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Properties
Property NameValue
TranscriptId578565
TrackFilteredModels2
ProteinId578479
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:405621..406787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578479gene_1942Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578479mRNA_1942-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1942CDS_1942Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1942 ID=mRNA_1942|Name=jgi.p|Nanoce1779_2|578479|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp
CCGACGCATCAGCCCCAGTATTATCACGCAGCATTTGGAGAGCCAGGGCA
CTACGGACCCGCAACACGACATCCACCGCAGCCACCGCCGCCGGCTGTGC
CACGGCTTCCTTGCCCGCCCTATGTCATGGCGGGCTTCGTGCGGGGCAAG
GCCCGGTATGCCGATGAGCAAGTTGACGAGGAGAGGCAAGCCGATCAACC
TTCCAACCGCACAAGCACTTCTGCTACAACACCCAACGACGAGTGTCCCT
CCGCCTTGTATGCCGCACTGACAGCACGCCCTGCAGAAGGACCAGAAGTG
ATGGTCCTGGAGAATGACGAGGTTGAGATTCTTCCCACGCGAAAGCGGCG
ACGTTGTGCACAAGGTGCAGACCCCCCAACTCATGCTGCCGATGTCACTA
TTCTCTTTAACAGCGACGAGGACGATGGTGATGGTGGTGATCTGACAGCC
TCTGCACCAGCCCAAGCCGCCGCAACAGCTGTTAGCAATACCAACGCTGA
CGTTGTCGTTCTCCTCGACGACGACGACCAGTCGATCCCCGTGTTCGACT
GCGTCATTTGTCAGGAACGCATCACATCTACGGACCAGGCCACGCATGAA
CGAAGTACCCTGCACACATTCAATGCACAAAAATCCGCGTCCATTCGTCG
CATCGTGCTCCCCGAAAGCAACCGTGGCGTCCAGCTGCTCGCCCGCCTCG
GGTGGAAGGATGACCAAGGCCTCGGTAAAAACGGCCAGGGACGAATGCAA
CCCACAAAGTCCATCTTGAAGCTCGATCGGACGGGCTTGGGGCACACGCA
GCAGCTCCCGGCGCGGGTGACTCATTTCCCTTCCCACAGTGCCGAGCAGG
CGGCAAGGGCAGTGGATGGCAAAAGCGAGGCTCAGCGCAAAGTGGAGGAG
ATCGAGCTTTGGGCGCGAGATGGACGAGCGATGGCACAAGGAAGGGCAGG
AAAACAGGGAGAACGGGGGCGAAGCGTTACGTTTGGGGAGGTTGGGCGAT
GTGAGACGGCAAGGGAGAGGGAGCGACGGTTGAAGAAGGAGAAGGAAACG
AGGGCTCGGATTATCGCGGACTTGAACGGGGAGTGAAGGGTAGGAGAGAA
AGTGAATGCATGACATACAGAAGAATGTACAGCAATTGGAAGAAAGAGAG
AAAGATGGCAATTGCAC
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protein sequence of jgi.p|Nanoce1779_2|578479

>mRNA_1942-protein ID=mRNA_1942-protein|Name=jgi.p|Nanoce1779_2|578479|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MAGFVRGKARYADEQVDEERQADQPSNRTSTSATTPNDECPSALYAALTA
RPAEGPEVMVLENDEVEILPTRKRRRCAQGADPPTHAADVTILFNSDEDD
GDGGDLTASAPAQAAATAVSNTNADVVVLLDDDDQSIPVFDCVICQERIT
STDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLG
KNGQGRMQPTKSILKLDRTGLGHTQQLPARVTHFPSHSAEQAARAVDGKS
EAQRKVEEIELWARDGRAMAQGRAGKQGERGRSVTFGEVGRCETARERER
RLKKEKETRARIIADLNGE*
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mRNA from alignment at scaffold_4:405621..406787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1942 ID=mRNA_1942|Name=jgi.p|Nanoce1779_2|578479|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp|location=Sequence derived from alignment at scaffold_4:405621..406787- (Nannochloropsis oceanica)
CCGACGCATCAGCCCCAGTATTATCACGCAGCATTTGGAGAGCCAGGGCA
CTACGGACCCGCAACACGACATCCACCGCAGCCACCGCCGCCGGCTGTGC
CACGGCTTCCTTGCCCGCCCTATGTCATGGCGGGCTTCGTGCGGGGCAAG
GCCCGGTATGCCGATGAGCAAGTTGACGAGGAGAGGCAAGCCGATCAACC
TTCCAACCGCACAAGCACTTCTGCTACAACACCCAACGACGAGTGTCCCT
CCGCCTTGTATGCCGCACTGACAGCACGCCCTGCAGAAGGACCAGAAGTG
ATGGTCCTGGAGAATGACGAGGTTGAGATTCTTCCCACGCGAAAGCGGCG
ACGTTGTGCACAAGGTGCAGACCCCCCAACTCATGCTGCCGATGTCACTA
TTCTCTTTAACAGCGACGAGGACGATGGTGATGGTGGTGATCTGACAGCC
TCTGCACCAGCCCAAGCCGCCGCAACAGCTGTTAGCAATACCAACGCTGA
CGTTGTCGTTCTCCTCGACGACGACGACCAGTCGATCCCCGTGTTCGACT
GCGTCATTTGTCAGGAACGCATCACATCTACGGACCAGGCCACGCATGAA
CGAAGTACCCTGCACACATTCAATGCACAAAAATCCGCGTCCATTCGTCG
CATCGTGCTCCCCGAAAGCAACCGTGGCGTCCAGCTGCTCGCCCGCCTCG
GGTGGAAGGATGACCAAGGCCTCGGTAAAAACGGCCAGGGACGAATGCAA
CCCACAAAGTCCATCTTGAAGCTCGATCGGACGGGCTTGGGGCACACGCA
GCAGCTCCCGGCGCGGGTGACTCATTTCCCTTCCCACAGTGCCGAGCAGG
CGGCAAGGGCAGTGGATGGCAAAAGCGAGGCTCAGCGCAAAGTGGAGGAG
ATCGAGCTTTGGGCGCGAGATGGACGAGCGATGGCACAAGGAAGGGCAGG
AAAACAGGGAGAACGGGGGCGAAGCGTTACGTTTGGGGAGGTTGGGCGAT
GTGAGACGGCAAGGGAGAGGGAGCGACGGTTGAAGAAGGAGAAGGAAACG
AGGGCTCGGATTATCGCGGACTTGAACGGGGAGTGAAGGGTAGGAGAGAA
AGTGAATGCATGACATACAGAAGAATGTACAGCAATTGGAAGAAAGAGAG
AAAGATGGCAATTGCAC
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Coding sequence (CDS) from alignment at scaffold_4:405621..406787-

>mRNA_1942 ID=mRNA_1942|Name=jgi.p|Nanoce1779_2|578479|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_4:405621..406787- (Nannochloropsis oceanica)
ATGGCGGGCTTCGTGCGGGGCAAGGCCCGGTATGCCGATGAGCAAGTTGA
CGAGGAGAGGCAAGCCGATCAACCTTCCAACCGCACAAGCACTTCTGCTA
CAACACCCAACGACGAGTGTCCCTCCGCCTTGTATGCCGCACTGACAGCA
CGCCCTGCAGAAGGACCAGAAGTGATGGTCCTGGAGAATGACGAGGTTGA
GATTCTTCCCACGCGAAAGCGGCGACGTTGTGCACAAGGTGCAGACCCCC
CAACTCATGCTGCCGATGTCACTATTCTCTTTAACAGCGACGAGGACGAT
GGTGATGGTGGTGATCTGACAGCCTCTGCACCAGCCCAAGCCGCCGCAAC
AGCTGTTAGCAATACCAACGCTGACGTTGTCGTTCTCCTCGACGACGACG
ACCAGTCGATCCCCGTGTTCGACTGCGTCATTTGTCAGGAACGCATCACA
TCTACGGACCAGGCCACGCATGAACGAAGTACCCTGCACACATTCAATGC
ACAAAAATCCGCGTCCATTCGTCGCATCGTGCTCCCCGAAAGCAACCGTG
GCGTCCAGCTGCTCGCCCGCCTCGGGTGGAAGGATGACCAAGGCCTCGGT
AAAAACGGCCAGGGACGAATGCAACCCACAAAGTCCATCTTGAAGCTCGA
TCGGACGGGCTTGGGGCACACGCAGCAGCTCCCGGCGCGGGTGACTCATT
TCCCTTCCCACAGTGCCGAGCAGGCGGCAAGGGCAGTGGATGGCAAAAGC
GAGGCTCAGCGCAAAGTGGAGGAGATCGAGCTTTGGGCGCGAGATGGACG
AGCGATGGCACAAGGAAGGGCAGGAAAACAGGGAGAACGGGGGCGAAGCG
TTACGTTTGGGGAGGTTGGGCGATGTGAGACGGCAAGGGAGAGGGAGCGA
CGGTTGAAGAAGGAGAAGGAAACGAGGGCTCGGATTATCGCGGACTTGAA
CGGGGAGTGA
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Synonyms
Publications