jgi.p|Nanoce1779_2|563604, mRNA_1940 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|563604
Unique Name	mRNA_1940
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	861
Alignment location	scaffold_4:402610..404024 -

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Properties


Property Name	Value
TranscriptId	563690
Track	FilteredModels2
ProteinId	563604

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:402610..404024 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|563604	gene_1940	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|563604	mRNA_1940-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1940	CDS_1940	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:402610..404024-
coding sequence from alignment at scaffold_4:402610..404024-

mRNA sequence

>mRNA_1940 ID=mRNA_1940|Name=jgi.p|Nanoce1779_2|563604|organism=Nannochloropsis oceanica|type=mRNA|length=861bp
ATGGACGATGCTGCATTTGAGGCTTTTGCATCATGCCGATTTCAAGAGGC
GGCTCGATTGGCAGCAGAAGAACTGGCCAAGGCGAAAGAGCCTCATCAGG
ACGACAGCCAAGCAGACATGCTCAAGCGTCCGACTCAAGGCGTGCCCCTG
CCATGCTCATTGTTGGATGGATTTTTAGAGAAGGAGGGAGGCAAGACATG
CATCCTCGTTGAGCTACATGAGCACTGTGCGAGGTCGGACAAGCTCGCCG
CCATCCTTGTGCAGTGTGCCTACGAACTCAAGCACGAAGCCGAGGAAAGC
CTCTTTGTCCAGCATTATGCCGCCCAGGGTAGCATCCCCTTTCCCGTGGC
ATTGATATGGCTTCAAGTCTGCCTCGCCAAGGGCGAGACGCACTGTAGCA
CTGTTCGGCGAGTGTTAATGCAGCTTTTGGTGGCCTTGGAGAAGAAAGAT
GAAGAGCTGCTGCAGTTGTCAGATCTAAGTAATTTGGAAAAAGAAGAATC
GCAGTCCTCGGCGCACCAACTGGGGGGGGGAGGAGTGATGCTGGCCCTGG
GCGAGGGGGAGGCGGGGTTGGAGAGGGTGCAGGTAGACAAGCTCCTGGAG
GACCCGGTCCGGCAGGGCCGCTGTGAAGCGGCAACGGGAAACCACGCCTC
CAAGTGGCCGGCGAAGCAGCAATGGAAAAAGAGAAGCGCGGCAAGGCTCA
CGAGCACAGCCCAAGCCGAAAAAAGAAACATCAAAGTCTTCTTCTTCCTC
TTCTTCGGCGGCACGAAGCACCGTCCTATCGTCCCCGTCGCCACCGTCCT
CTCAAGCGCTCAGCAGCCATGTCTCGTCTCCACGCGTCCTCGCTTCATCC
TTATCAAATAG

protein sequence of jgi.p|Nanoce1779_2|563604

>mRNA_1940-protein ID=mRNA_1940-protein|Name=jgi.p|Nanoce1779_2|563604|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MDDAAFEAFASCRFQEAARLAAEELAKAKEPHQDDSQADMLKRPTQGVPL
PCSLLDGFLEKEGGKTCILVELHEHCARSDKLAAILVQCAYELKHEAEES
LFVQHYAAQGSIPFPVALIWLQVCLAKGETHCSTVRRVLMQLLVALEKKD
EELLQLSDLSNLEKEESQSSAHQLGGGGVMLALGEGEAGLERVQVDKLLE
DPVRQGRCEAATGNHASKWPAKQQWKKRSAARLTSTAQAEKRNIKVFFFL
FFGGTKHRPIVPVATVLSSAQQPCLVSTRPRFILIK*

mRNA from alignment at scaffold_4:402610..404024-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1940 ID=mRNA_1940|Name=jgi.p|Nanoce1779_2|563604|organism=Nannochloropsis oceanica|type=mRNA|length=1415bp|location=Sequence derived from alignment at scaffold_4:402610..404024- (Nannochloropsis oceanica)
ATGGACGATGCTGCATTTGAGGCTTTTGCATCATGCCGATTTCAAGAGGC
GGCTCGATTGGCAGCAGAAGAACTGGCCAAGGCGAAAGAGCCTCATCAGG
ACGACAGCCAAGCAGACATGCTCAAGCGTCCGACTCAAGGCGTGCCCCTG
CCATGCTCATTGTTGGATGGATTTTTAGAGAAGGAGGGAGGCAAGACATG
CATCCTCGTTGAGCTACATGAGCACTGTGCGAGGTAGGGTGCAAATCGGC
AGGGTTCCAAAATATGAGCTAAATCCCCTCTCCTTCATAACTACCCTTCC
CTCACCCCTACTCCTGTCCAGGACATAACAAATAGCTTGTTCGCCATCTC
ATGCATATTTCCCCTCTTTGTCCTTAACATCCTTTTTCTGGTCAGGTCGG
ACAAGCTCGCCGCCATCCTTGTGCAGTGTGCCTACGAACTCAAGCACGAA
GCCGAGGAAAGCCTCTTTGTCCAGCATTATGCCGCCCAGGGTAGCATCCC
CTTTCCCGTGGCATTGATATGGTACGTTAGACAGCATGTCTTGTTGAAGC
GGAGATTTCGGGTCATTGACATTATCCTCCTCCTCCTCACAGGCTTCAAG
TCTGCCTCGCCAAGGGCGAGACGCACTGTAGCACTGTTCGGCGAGTGTTA
ATGCAGCTTTTGGTGGCCTTGGAGAAGAAAGATGAAGAGCTGCTGCAGTT
GTCAGATCTAAGTAATTTGGAAAAAGAAGAATCGCAGTCCTCGGCGCACC
AACTGGGGGGGGGAGGAGTAAGAGATGAAATGGAGGAGGAAAGGGTAGTA
GGAGAAGCTGTAGGAGCAGCAGCAGTAGTAGCAGCAGTTGTCGGCGAGAT
AGGCAAGGGAAAGGAAAAGTGCGAAGGGGATAGGGTTCAACGAAGAAAAT
CTCTAAGGGTAATGTACGGTCAAGCCATGGAGCTGCTGGTGCTGAAGGTG
ATGCTGGCCCTGGGCGAGGGGGAGGCGGGGTTGGAGAGGGTGCAGGTAGA
CAAGCTCCTGGAGGACCCGGTCCGGCAGGTAAGTTTTAATTTCCAAGGAA
GAAGATGCCTCCGTGTTAATAAAGTGCAGTGTTTGTCTAGCTGAATGCTA
ACCATCGTCTTGTTATCCCCCTCTTTCTTACCTTCCCACAAATAAACAGA
CACTTATTGGTTCCTGCAGGGCCGCTGTGAAGCGGCAACGGGAAACCACG
CCTCCAAGTGGCCGGCGAAGCAGCAATGGAAAAAGAGAAGCGCGGCAAGG
CTCACGAGCACAGCCCAAGCCGAAAAAAGAAACATCAAAGTCTTCTTCTT
CCTCTTCTTCGGCGGCACGAAGCACCGTCCTATCGTCCCCGTCGCCACCG
TCCTCTCAAGCGCTCAGCAGCCATGTCTCGTCTCCACGCGTCCTCGCTTC
ATCCTTATCAAATAG

Coding sequence (CDS) from alignment at scaffold_4:402610..404024-

>mRNA_1940 ID=mRNA_1940|Name=jgi.p|Nanoce1779_2|563604|organism=Nannochloropsis oceanica|type=CDS|length=4305bp|location=Sequence derived from alignment at scaffold_4:402610..404024- (Nannochloropsis oceanica)
GGCCGCTGTGAAGCGGCAACGGGAAACCACGCCTCCAAGTGGCCGGCGAA
GCAGCAATGGAAAAAGAGAAGCGCGGCAAGGCTCACGAGCACAGCCCAAG
CCGAAAAAAGAAACATCAAAGTCTTCTTCTTCCTCTTCTTCGGCGGCACG
AAGCACCGTCCTATCGTCCCCGTCGCCACCGTCCTCTCAAGCGCTCAGCA
GCCATGTCTCGTCTCCACGCGTCCTCGCTTCATCCTTATCAAATAGGTGA
TGCTGGCCCTGGGCGAGGGGGAGGCGGGGTTGGAGAGGGTGCAGGTAGAC
AAGCTCCTGGAGGACCCGGTCCGGCAGGCTTCAAGTCTGCCTCGCCAAGG
GCGAGACGCACTGTAGCACTGTTCGGCGAGTGTTAATGCAGCTTTTGGTG
GCCTTGGAGAAGAAAGATGAAGAGCTGCTGCAGTTGTCAGATCTAAGTAA
TTTGGAAAAAGAAGAATCGCAGTCCTCGGCGCACCAACTGGGGGGGGGAG
GAGTCGGACAAGCTCGCCGCCATCCTTGTGCAGTGTGCCTACGAACTCAA
GCACGAAGCCGAGGAAAGCCTCTTTGTCCAGCATTATGCCGCCCAGGGTA
GCATCCCCTTTCCCGTGGCATTGATATGATGGACGATGCTGCATTTGAGG
CTTTTGCATCATGCCGATTTCAAGAGGCGGCTCGATTGGCAGCAGAAGAA
CTGGCCAAGGCGAAAGAGCCTCATCAGGACGACAGCCAAGCAGACATGCT
CAAGCGTCCGACTCAAGGCGTGCCCCTGCCATGCTCATTGTTGGATGGAT
TTTTAGAGAAGGAGGGAGGCAAGACATGCATCCTCGTTGAGCTACATGAG
CACTGTGCGAGGGCCGCTGTGAAGCGGCAACGGGAAACCACGCCTCCAAG
TGGCCGGCGAAGCAGCAATGGAAAAAGAGAAGCGCGGCAAGGCTCACGAG
CACAGCCCAAGCCGAAAAAAGAAACATCAAAGTCTTCTTCTTCCTCTTCT
TCGGCGGCACGAAGCACCGTCCTATCGTCCCCGTCGCCACCGTCCTCTCA
AGCGCTCAGCAGCCATGTCTCGTCTCCACGCGTCCTCGCTTCATCCTTAT
CAAATAGGTGATGCTGGCCCTGGGCGAGGGGGAGGCGGGGTTGGAGAGGG
TGCAGGTAGACAAGCTCCTGGAGGACCCGGTCCGGCAGGCTTCAAGTCTG
CCTCGCCAAGGGCGAGACGCACTGTAGCACTGTTCGGCGAGTGTTAATGC
AGCTTTTGGTGGCCTTGGAGAAGAAAGATGAAGAGCTGCTGCAGTTGTCA
GATCTAAGTAATTTGGAAAAAGAAGAATCGCAGTCCTCGGCGCACCAACT
GGGGGGGGGAGGAGTCGGACAAGCTCGCCGCCATCCTTGTGCAGTGTGCC
TACGAACTCAAGCACGAAGCCGAGGAAAGCCTCTTTGTCCAGCATTATGC
CGCCCAGGGTAGCATCCCCTTTCCCGTGGCATTGATATGATGGACGATGC
TGCATTTGAGGCTTTTGCATCATGCCGATTTCAAGAGGCGGCTCGATTGG
CAGCAGAAGAACTGGCCAAGGCGAAAGAGCCTCATCAGGACGACAGCCAA
GCAGACATGCTCAAGCGTCCGACTCAAGGCGTGCCCCTGCCATGCTCATT
GTTGGATGGATTTTTAGAGAAGGAGGGAGGCAAGACATGCATCCTCGTTG
AGCTACATGAGCACTGTGCGAGGGCCGCTGTGAAGCGGCAACGGGAAACC
ACGCCTCCAAGTGGCCGGCGAAGCAGCAATGGAAAAAGAGAAGCGCGGCA
AGGCTCACGAGCACAGCCCAAGCCGAAAAAAGAAACATCAAAGTCTTCTT
CTTCCTCTTCTTCGGCGGCACGAAGCACCGTCCTATCGTCCCCGTCGCCA
CCGTCCTCTCAAGCGCTCAGCAGCCATGTCTCGTCTCCACGCGTCCTCGC
TTCATCCTTATCAAATAGGTGATGCTGGCCCTGGGCGAGGGGGAGGCGGG
GTTGGAGAGGGTGCAGGTAGACAAGCTCCTGGAGGACCCGGTCCGGCAGG
CTTCAAGTCTGCCTCGCCAAGGGCGAGACGCACTGTAGCACTGTTCGGCG
AGTGTTAATGCAGCTTTTGGTGGCCTTGGAGAAGAAAGATGAAGAGCTGC
TGCAGTTGTCAGATCTAAGTAATTTGGAAAAAGAAGAATCGCAGTCCTCG
GCGCACCAACTGGGGGGGGGAGGAGTCGGACAAGCTCGCCGCCATCCTTG
TGCAGTGTGCCTACGAACTCAAGCACGAAGCCGAGGAAAGCCTCTTTGTC
CAGCATTATGCCGCCCAGGGTAGCATCCCCTTTCCCGTGGCATTGATATG
ATGGACGATGCTGCATTTGAGGCTTTTGCATCATGCCGATTTCAAGAGGC
GGCTCGATTGGCAGCAGAAGAACTGGCCAAGGCGAAAGAGCCTCATCAGG
ACGACAGCCAAGCAGACATGCTCAAGCGTCCGACTCAAGGCGTGCCCCTG
CCATGCTCATTGTTGGATGGATTTTTAGAGAAGGAGGGAGGCAAGACATG
CATCCTCGTTGAGCTACATGAGCACTGTGCGAGGGCCGCTGTGAAGCGGC
AACGGGAAACCACGCCTCCAAGTGGCCGGCGAAGCAGCAATGGAAAAAGA
GAAGCGCGGCAAGGCTCACGAGCACAGCCCAAGCCGAAAAAAGAAACATC
AAAGTCTTCTTCTTCCTCTTCTTCGGCGGCACGAAGCACCGTCCTATCGT
CCCCGTCGCCACCGTCCTCTCAAGCGCTCAGCAGCCATGTCTCGTCTCCA
CGCGTCCTCGCTTCATCCTTATCAAATAGGTGATGCTGGCCCTGGGCGAG
GGGGAGGCGGGGTTGGAGAGGGTGCAGGTAGACAAGCTCCTGGAGGACCC
GGTCCGGCAGGCTTCAAGTCTGCCTCGCCAAGGGCGAGACGCACTGTAGC
ACTGTTCGGCGAGTGTTAATGCAGCTTTTGGTGGCCTTGGAGAAGAAAGA
TGAAGAGCTGCTGCAGTTGTCAGATCTAAGTAATTTGGAAAAAGAAGAAT
CGCAGTCCTCGGCGCACCAACTGGGGGGGGGAGGAGTCGGACAAGCTCGC
CGCCATCCTTGTGCAGTGTGCCTACGAACTCAAGCACGAAGCCGAGGAAA
GCCTCTTTGTCCAGCATTATGCCGCCCAGGGTAGCATCCCCTTTCCCGTG
GCATTGATATGATGGACGATGCTGCATTTGAGGCTTTTGCATCATGCCGA
TTTCAAGAGGCGGCTCGATTGGCAGCAGAAGAACTGGCCAAGGCGAAAGA
GCCTCATCAGGACGACAGCCAAGCAGACATGCTCAAGCGTCCGACTCAAG
GCGTGCCCCTGCCATGCTCATTGTTGGATGGATTTTTAGAGAAGGAGGGA
GGCAAGACATGCATCCTCGTTGAGCTACATGAGCACTGTGCGAGGGCCGC
TGTGAAGCGGCAACGGGAAACCACGCCTCCAAGTGGCCGGCGAAGCAGCA
ATGGAAAAAGAGAAGCGCGGCAAGGCTCACGAGCACAGCCCAAGCCGAAA
AAAGAAACATCAAAGTCTTCTTCTTCCTCTTCTTCGGCGGCACGAAGCAC
CGTCCTATCGTCCCCGTCGCCACCGTCCTCTCAAGCGCTCAGCAGCCATG
TCTCGTCTCCACGCGTCCTCGCTTCATCCTTATCAAATAGGTGATGCTGG
CCCTGGGCGAGGGGGAGGCGGGGTTGGAGAGGGTGCAGGTAGACAAGCTC
CTGGAGGACCCGGTCCGGCAGGCTTCAAGTCTGCCTCGCCAAGGGCGAGA
CGCACTGTAGCACTGTTCGGCGAGTGTTAATGCAGCTTTTGGTGGCCTTG
GAGAAGAAAGATGAAGAGCTGCTGCAGTTGTCAGATCTAAGTAATTTGGA
AAAAGAAGAATCGCAGTCCTCGGCGCACCAACTGGGGGGGGGAGGAGTCG
GACAAGCTCGCCGCCATCCTTGTGCAGTGTGCCTACGAACTCAAGCACGA
AGCCGAGGAAAGCCTCTTTGTCCAGCATTATGCCGCCCAGGGTAGCATCC
CCTTTCCCGTGGCATTGATATGATGGACGATGCTGCATTTGAGGCTTTTG
CATCATGCCGATTTCAAGAGGCGGCTCGATTGGCAGCAGAAGAACTGGCC
AAGGCGAAAGAGCCTCATCAGGACGACAGCCAAGCAGACATGCTCAAGCG
TCCGACTCAAGGCGTGCCCCTGCCATGCTCATTGTTGGATGGATTTTTAG
AGAAGGAGGGAGGCAAGACATGCATCCTCGTTGAGCTACATGAGCACTGT
GCGAG

Synonyms

Publications