jgi.p|Nanoce1779_2|550823, mRNA_194 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|550823
Unique Name	mRNA_194
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1892
Alignment location	scaffold_3:486593..489076 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	550909
Track	FilteredModels2
ProteinId	550823

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:486593..489076 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|550823	gene_194	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|550823	mRNA_194-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_194	CDS_194	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:486593..489076+
coding sequence from alignment at scaffold_3:486593..489076+

mRNA sequence

>mRNA_194 ID=mRNA_194|Name=jgi.p|Nanoce1779_2|550823|organism=Nannochloropsis oceanica|type=mRNA|length=1892bp
ACAGCTTTCTTTTTCCCAAGTGCCTGCAGCGCCAAAAAAGAGCAAGGCTT
CCAATAACTCCCACAAAGCCTGCGCCCCTCCCCACCCTTCCCCTCGTCGT
CATGGCTACGGCAGTGCTTCGACAACCTCAATGCAAGGTGGCCCCCTCCC
AACTCCCGGTCTATGCCCGGGCTCGTGGAGAGAGTTCAGTAGCAGACTTG
GACCTAAACATGGAGACTCTGTTGGAGGAATATGTGTTGGATGACGATGA
TATGGGCATGGATTTTTGGGACGGGACCAATACTTCGGACACGAGCAAAG
ACACGGCCCCGAACAATATCAGCGATTTTGACGACATGGACGAGATGGCG
AGCGGCGGTGGAAGCGGACGAGGACTAGGGGGAAAGACAAGTAAAATCAG
TAGCAGTAGCAACAGCAGCAGCAGCAGCAGCAGCGGTACGGGCAAAGGGA
AGAAGCGCAAGGCCGCCGGTGGGGGTAGCAGTGGGGCGCCGAGGAAGAAG
AGTCACGAGCAGATGGAGCGTAGAAGAGAAAGGAATCGAATTTTGGCCCG
TCGGACGCGTCTGAGGAAGAAATTTATTTTTGAGAGTTTGCAGAAGCAAG
TTATGGATTTGAAACGGCAGAACATGAAGCTCAAGAGGATCGTGAAGGTG
AACATGGCGGAGCAAGCACCGGAGGTCCTCGGTTCGTGCACGGCCCGTCT
GCCTTCAATCGTCACTGAGTCCATGGCAGAGGCGTCGACACTGCTGGAGC
GAGGAGATTTCAATTTGGTCAAGTCGTTACAGACGGCCCAGCAGTCGTTT
GTGGTGACGGACCCGAGCTTGCCTGATAACCCTATCGTATTTGCCTCGCA
AGGCTTCCTGGACATGACGGGCTACAGCATGGGGCAAGTCCTTGGGCGGA
ACTGTCGCTTTTTGCAGGGGCCTCGCACGGACCCTGCGGCGGTGGAGAAG
ATTAGGAAGGGAGTGGCGACTGGGTCAGATACGTCGGTGGCCCTGTTGAA
TTATAAGGCGGACGGAACGGCGTTTTGGAATCAATTTTTTGTGGCGCCTT
TGAGGGATTTGAATGGGGAGGTGGTGTATTTCGTGGGAGCCCAATGTGTG
ATTGATAGGCCCATGGAGGAGATGGAGGAGGAGGCGCGGGTAAAGGCGAA
GGAGGAAGCGGAGGAACGGGCGGCGGCGGAGGCGGGTAGTGAGGAGGAAG
AAGATGAGGAAGAGGAGGATTGAGAGGGGGGAGAAGGAGATAAGAGAAGG
AGGGAGGAGAGGAGGAAGAGTTCATAAGTGAGATGTATACAATAACACAA
GGTCGAAAACGATAAAGAAGAGAGGAGTGACATCATGCACGAAAAAGGGA
ATAGATTCGGAGAGATATTGAGCAGGGAAAAAGCAAGAAGATGACAAGAC
GCAGACACGCACATACGGGTTGAAAATGAGATGGTTTTGTGAGGGCTGTG
ACGACGTTTTGTCGTGGTTTTTATCCGTTTTGATTAGCTTTTCGCAGCAG
CAGCAGCAGCAGGAGTTTGGAGAAGAAGAGAGCCGGGCCGTCAGGACTGG
GCGAGGCGATGAAGACATGAGACCTTGAGTAGTGTCAAGAAAGGAAGAAG
AAAAAAAGAGAAGAAGAGGAAGATATATGAAGAAGGAAAACGACGATGTG
TATGTAGTAAGAAGAAGAAGGAGGATGAGGAGAAGAAGGAAGTGGAAGAC
AGGGCCAGCCAACAAGCAGAATCTTAAAAACAGGAAAAGTTAATTCGCAG
AGAGATAAGTCGGCAGGACACAAAAGAGAGAGACACCAATATCAACATTA
GCAGCAACTGAAGTAGCAGGAAGACGACTAAAAAATGGAGAGAGTTGCTA
CTGGTGCATTCCCATCCCCTCGCTGTCCCTGCTTGCCGGCGG

protein sequence of jgi.p|Nanoce1779_2|550823

>mRNA_194-protein ID=mRNA_194-protein|Name=jgi.p|Nanoce1779_2|550823|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MATAVLRQPQCKVAPSQLPVYARARGESSVADLDLNMETLLEEYVLDDDD
MGMDFWDGTNTSDTSKDTAPNNISDFDDMDEMASGGGSGRGLGGKTSKIS
SSSNSSSSSSSGTGKGKKRKAAGGGSSGAPRKKSHEQMERRRERNRILAR
RTRLRKKFIFESLQKQVMDLKRQNMKLKRIVKVNMAEQAPEVLGSCTARL
PSIVTESMAEASTLLERGDFNLVKSLQTAQQSFVVTDPSLPDNPIVFASQ
GFLDMTGYSMGQVLGRNCRFLQGPRTDPAAVEKIRKGVATGSDTSVALLN
YKADGTAFWNQFFVAPLRDLNGEVVYFVGAQCVIDRPMEEMEEEARVKAK
EEAEERAAAEAGSEEEEDEEEED*

mRNA from alignment at scaffold_3:486593..489076+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_194 ID=mRNA_194|Name=jgi.p|Nanoce1779_2|550823|organism=Nannochloropsis oceanica|type=mRNA|length=2484bp|location=Sequence derived from alignment at scaffold_3:486593..489076+ (Nannochloropsis oceanica)
ACAGCTTTCTTTTTCCCAAGTGCCTGCAGCGCCAAAAAAGAGCAAGGCTT
CCAATAACTCCCACAAAGCCTGCGCCCCTCCCCACCCTTCCCCTCGTCGT
CATGGCTACGGCAGTGCTTCGACAACCTCAATGCAAGGTGGCCCCCTCCC
AACTCCCGGTCTATGCCCGGGCTCGTGGAGAGAGTTCAGTAGCAGACTTG
GTACGTACCCACTAAGCCCCTCTGCCAATATCAGGAGTAGCAACACCAGC
AGGATTAGAGGTAATAGTAGTGATAAGCAATACGACGAGTGGATAGATAT
CACACCCCTAGGCCACCTATCTATTATTTTTTAGTCCCGTTAAGACACGT
ATGTCAACGACGCATGCCTAGGCTCATCGTTATTCCCTCCCCTCCCTCCT
TCTCTCCTCTCTCGCCATTCTTCAAAAACACAGGACCTAAACATGGAGAC
TCTGTTGGAGGAATATGTGTTGGATGACGATGATATGGGCATGGATTTTT
GGGACGGGACCAATACTTCGGACACGAGCAAAGACACGGCCCCGAACAAT
ATCAGCGATGTACGTGTGCCTGTGCCTCTTTCCTCCTCAGCAATTTTATT
TGTCAAGCGAGAGGATAAAGTATGCAATTGCTTAAGTTTTGGAGAAAGAC
TCCGGAGCGGGATCAGAACATTCCATAATTTTTTTCGACGATCTTCACAT
CTTTTCAACTCTCCTTTCTCAAACCCCAACAACCTTAAAAAAATTAACAG
TTTGACGACATGGACGAGATGGCGAGCGGCGGTGGAAGCGGACGAGGACT
AGGGGGAAAGACAAGTAAAATCAGTAGCAGTAGCAACAGCAGCAGCAGCA
GCAGCAGCGGTACGGGCAAAGGGAAGAAGCGCAAGGCCGCCGGTGGGGGT
AGCAGTGGGGCGCCGAGGAAGAAGAGTCACGAGCAGATGGAGCGTAGAAG
AGAAAGGAATCGAATTTTGGCCCGTCGGACGCGTCTGAGGAAGAAATTTA
TTTTTGAGAGTTTGCAGAAGCAAGTTATGGATTTGAAACGGCAGAACATG
AAGCTCAAGAGGATCGTGAAGGTGAACATGGCGGAGCAAGCACCGGAGGT
CCTCGGTTCGTGCACGGCCCGTCTGCCTTCAATCGTCACTGAGTCCATGG
CAGAGGCGTCGACACTGCTGGAGCGAGGAGATTTCAATTTGGTCAAGTCG
TTACAGACGGCCCAGCAGTCGTTTGTGGTGACGGACCCGAGCTTGCCTGA
TAACCGTAAGTGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGATGATGTCATATTTTTATGATTTGCCCCATTGCTCGCCCTTTGC
TTATTTTACCTTGCCTCTTTCCTCTCTCCCTCTTCCCACCTCGACATCCC
CCCCCCACGCGCCTCAAACACAGCTATCGTATTTGCCTCGCAAGGCTTCC
TGGACATGACGGGCTACAGCATGGGGCAAGTCCTTGGGCGGAACTGTCGC
TTTTTGCAGGGGCCTCGCACGGACCCTGCGGCGGTGGAGAAGATTAGGAA
GGGAGTGGCGACTGGGTCAGATACGTCGGTGGCCCTGTTGAATTATAAGG
CGGACGGAACGGCGTTTTGGAATCAATTTTTTGTGGCGCCTTTGAGGGAT
TTGAATGGGGAGGTGGTGTATTTCGTGGGAGCCCAATGTGTGATTGATAG
GCCCATGGAGGAGATGGAGGAGGAGGCGCGGGTAAAGGCGAAGGAGGAAG
CGGAGGAACGGGCGGCGGCGGAGGCGGGTAGTGAGGAGGAAGAAGATGAG
GAAGAGGAGGATTGAGAGGGGGGAGAAGGAGATAAGAGAAGGAGGGAGGA
GAGGAGGAAGAGTTCATAAGTGAGATGTATACAATAACACAAGGTCGAAA
ACGATAAAGAAGAGAGGAGTGACATCATGCACGAAAAAGGGAATAGATTC
GGAGAGATATTGAGCAGGGAAAAAGCAAGAAGATGACAAGACGCAGACAC
GCACATACGGGTTGAAAATGAGATGGTTTTGTGAGGGCTGTGACGACGTT
TTGTCGTGGTTTTTATCCGTTTTGATTAGCTTTTCGCAGCAGCAGCAGCA
GCAGGAGTTTGGAGAAGAAGAGAGCCGGGCCGTCAGGACTGGGCGAGGCG
ATGAAGACATGAGACCTTGAGTAGTGTCAAGAAAGGAAGAAGAAAAAAAG
AGAAGAAGAGGAAGATATATGAAGAAGGAAAACGACGATGTGTATGTAGT
AAGAAGAAGAAGGAGGATGAGGAGAAGAAGGAAGTGGAAGACAGGGCCAG
CCAACAAGCAGAATCTTAAAAACAGGAAAAGTTAATTCGCAGAGAGATAA
GTCGGCAGGACACAAAAGAGAGAGACACCAATATCAACATTAGCAGCAAC
TGAAGTAGCAGGAAGACGACTAAAAAATGGAGAGAGTTGCTACTGGTGCA
TTCCCATCCCCTCGCTGTCCCTGCTTGCCGGCGG

Coding sequence (CDS) from alignment at scaffold_3:486593..489076+

>mRNA_194 ID=mRNA_194|Name=jgi.p|Nanoce1779_2|550823|organism=Nannochloropsis oceanica|type=CDS|length=4488bp|location=Sequence derived from alignment at scaffold_3:486593..489076+ (Nannochloropsis oceanica)
ATGGCTACGGCAGTGCTTCGACAACCTCAATGCAAGGTGGCCCCCTCCCA
ACTCCCGGTCTATGCCCGGGCTCGTGGAGAGAGTTCAGTAGCAGACTTGG
ACCTAAACATGGAGACTCTGTTGGAGGAATATGTGTTGGATGACGATGAT
ATGGGCATGGATTTTTGGGACGGGACCAATACTTCGGACACGAGCAAAGA
CACGGCCCCGAACAATATCAGCGATTTTGACGACATGGACGAGATGGCGA
GCGGCGGTGGAAGCGGACGAGGACTAGGGGGAAAGACAAGTAAAATCAGT
AGCAGTAGCAACAGCAGCAGCAGCAGCAGCAGCGGTACGGGCAAAGGGAA
GAAGCGCAAGGCCGCCGGTGGGGGTAGCAGTGGGGCGCCGAGGAAGAAGA
GTCACGAGCAGATGGAGCGTAGAAGAGAAAGGAATCGAATTTTGGCCCGT
CGGACGCGTCTGAGGAAGAAATTTATTTTTGAGAGTTTGCAGAAGCAAGT
TATGGATTTGAAACGGCAGAACATGAAGCTCAAGAGGATCGTGAAGGTGA
ACATGGCGGAGCAAGCACCGGAGGTCCTCGGTTCGTGCACGGCCCGTCTG
CCTTCAATCGTCACTGAGTCCATGGCAGAGGCGTCGACACTGCTGGAGCG
AGGAGATTTCAATTTGGTCAAGTCGTTACAGACGGCCCAGCAGTCGTTTG
TGGTGACGGACCCGAGCTTGCCTGATAACCCTATCGTATTTGCCTCGCAA
GGCTTCCTGGACATGACGGGCTACAGCATGGGGCAAGTCCTTGGGCGGAA
CTGTCGCTTTTTGCAGGGGCCTCGCACGGACCCTGCGGCGGTGGAGAAGA
TTAGGAAGGGAGTGGCGACTGGGTCAGATACGTCGGTGGCCCTGTTGAAT
TATAAGGCGGACGGAACGGCGTTTTGGAATCAATTTTTTGTGGCGCCTTT
GAGGGATTTGAATGGGGAGGTGGTGTATTTCGTGGGAGCCCAATGTGTGA
TTGATAGGCCCATGGAGGAGATGGAGGAGGAGGCGCGGGTAAAGGCGAAG
GAGGAAGCGGAGGAACGGGCGGCGGCGGAGGCGGGTAGTGAGGAGGAAGA
AGATGAGGAAGAGGAGGATTGAATGGCTACGGCAGTGCTTCGACAACCTC
AATGCAAGGTGGCCCCCTCCCAACTCCCGGTCTATGCCCGGGCTCGTGGA
GAGAGTTCAGTAGCAGACTTGGACCTAAACATGGAGACTCTGTTGGAGGA
ATATGTGTTGGATGACGATGATATGGGCATGGATTTTTGGGACGGGACCA
ATACTTCGGACACGAGCAAAGACACGGCCCCGAACAATATCAGCGATTTT
GACGACATGGACGAGATGGCGAGCGGCGGTGGAAGCGGACGAGGACTAGG
GGGAAAGACAAGTAAAATCAGTAGCAGTAGCAACAGCAGCAGCAGCAGCA
GCAGCGGTACGGGCAAAGGGAAGAAGCGCAAGGCCGCCGGTGGGGGTAGC
AGTGGGGCGCCGAGGAAGAAGAGTCACGAGCAGATGGAGCGTAGAAGAGA
AAGGAATCGAATTTTGGCCCGTCGGACGCGTCTGAGGAAGAAATTTATTT
TTGAGAGTTTGCAGAAGCAAGTTATGGATTTGAAACGGCAGAACATGAAG
CTCAAGAGGATCGTGAAGGTGAACATGGCGGAGCAAGCACCGGAGGTCCT
CGGTTCGTGCACGGCCCGTCTGCCTTCAATCGTCACTGAGTCCATGGCAG
AGGCGTCGACACTGCTGGAGCGAGGAGATTTCAATTTGGTCAAGTCGTTA
CAGACGGCCCAGCAGTCGTTTGTGGTGACGGACCCGAGCTTGCCTGATAA
CCCTATCGTATTTGCCTCGCAAGGCTTCCTGGACATGACGGGCTACAGCA
TGGGGCAAGTCCTTGGGCGGAACTGTCGCTTTTTGCAGGGGCCTCGCACG
GACCCTGCGGCGGTGGAGAAGATTAGGAAGGGAGTGGCGACTGGGTCAGA
TACGTCGGTGGCCCTGTTGAATTATAAGGCGGACGGAACGGCGTTTTGGA
ATCAATTTTTTGTGGCGCCTTTGAGGGATTTGAATGGGGAGGTGGTGTAT
TTCGTGGGAGCCCAATGTGTGATTGATAGGCCCATGGAGGAGATGGAGGA
GGAGGCGCGGGTAAAGGCGAAGGAGGAAGCGGAGGAACGGGCGGCGGCGG
AGGCGGGTAGTGAGGAGGAAGAAGATGAGGAAGAGGAGGATTGAATGGCT
ACGGCAGTGCTTCGACAACCTCAATGCAAGGTGGCCCCCTCCCAACTCCC
GGTCTATGCCCGGGCTCGTGGAGAGAGTTCAGTAGCAGACTTGGACCTAA
ACATGGAGACTCTGTTGGAGGAATATGTGTTGGATGACGATGATATGGGC
ATGGATTTTTGGGACGGGACCAATACTTCGGACACGAGCAAAGACACGGC
CCCGAACAATATCAGCGATTTTGACGACATGGACGAGATGGCGAGCGGCG
GTGGAAGCGGACGAGGACTAGGGGGAAAGACAAGTAAAATCAGTAGCAGT
AGCAACAGCAGCAGCAGCAGCAGCAGCGGTACGGGCAAAGGGAAGAAGCG
CAAGGCCGCCGGTGGGGGTAGCAGTGGGGCGCCGAGGAAGAAGAGTCACG
AGCAGATGGAGCGTAGAAGAGAAAGGAATCGAATTTTGGCCCGTCGGACG
CGTCTGAGGAAGAAATTTATTTTTGAGAGTTTGCAGAAGCAAGTTATGGA
TTTGAAACGGCAGAACATGAAGCTCAAGAGGATCGTGAAGGTGAACATGG
CGGAGCAAGCACCGGAGGTCCTCGGTTCGTGCACGGCCCGTCTGCCTTCA
ATCGTCACTGAGTCCATGGCAGAGGCGTCGACACTGCTGGAGCGAGGAGA
TTTCAATTTGGTCAAGTCGTTACAGACGGCCCAGCAGTCGTTTGTGGTGA
CGGACCCGAGCTTGCCTGATAACCCTATCGTATTTGCCTCGCAAGGCTTC
CTGGACATGACGGGCTACAGCATGGGGCAAGTCCTTGGGCGGAACTGTCG
CTTTTTGCAGGGGCCTCGCACGGACCCTGCGGCGGTGGAGAAGATTAGGA
AGGGAGTGGCGACTGGGTCAGATACGTCGGTGGCCCTGTTGAATTATAAG
GCGGACGGAACGGCGTTTTGGAATCAATTTTTTGTGGCGCCTTTGAGGGA
TTTGAATGGGGAGGTGGTGTATTTCGTGGGAGCCCAATGTGTGATTGATA
GGCCCATGGAGGAGATGGAGGAGGAGGCGCGGGTAAAGGCGAAGGAGGAA
GCGGAGGAACGGGCGGCGGCGGAGGCGGGTAGTGAGGAGGAAGAAGATGA
GGAAGAGGAGGATTGAATGGCTACGGCAGTGCTTCGACAACCTCAATGCA
AGGTGGCCCCCTCCCAACTCCCGGTCTATGCCCGGGCTCGTGGAGAGAGT
TCAGTAGCAGACTTGGACCTAAACATGGAGACTCTGTTGGAGGAATATGT
GTTGGATGACGATGATATGGGCATGGATTTTTGGGACGGGACCAATACTT
CGGACACGAGCAAAGACACGGCCCCGAACAATATCAGCGATTTTGACGAC
ATGGACGAGATGGCGAGCGGCGGTGGAAGCGGACGAGGACTAGGGGGAAA
GACAAGTAAAATCAGTAGCAGTAGCAACAGCAGCAGCAGCAGCAGCAGCG
GTACGGGCAAAGGGAAGAAGCGCAAGGCCGCCGGTGGGGGTAGCAGTGGG
GCGCCGAGGAAGAAGAGTCACGAGCAGATGGAGCGTAGAAGAGAAAGGAA
TCGAATTTTGGCCCGTCGGACGCGTCTGAGGAAGAAATTTATTTTTGAGA
GTTTGCAGAAGCAAGTTATGGATTTGAAACGGCAGAACATGAAGCTCAAG
AGGATCGTGAAGGTGAACATGGCGGAGCAAGCACCGGAGGTCCTCGGTTC
GTGCACGGCCCGTCTGCCTTCAATCGTCACTGAGTCCATGGCAGAGGCGT
CGACACTGCTGGAGCGAGGAGATTTCAATTTGGTCAAGTCGTTACAGACG
GCCCAGCAGTCGTTTGTGGTGACGGACCCGAGCTTGCCTGATAACCCTAT
CGTATTTGCCTCGCAAGGCTTCCTGGACATGACGGGCTACAGCATGGGGC
AAGTCCTTGGGCGGAACTGTCGCTTTTTGCAGGGGCCTCGCACGGACCCT
GCGGCGGTGGAGAAGATTAGGAAGGGAGTGGCGACTGGGTCAGATACGTC
GGTGGCCCTGTTGAATTATAAGGCGGACGGAACGGCGTTTTGGAATCAAT
TTTTTGTGGCGCCTTTGAGGGATTTGAATGGGGAGGTGGTGTATTTCGTG
GGAGCCCAATGTGTGATTGATAGGCCCATGGAGGAGATGGAGGAGGAGGC
GCGGGTAAAGGCGAAGGAGGAAGCGGAGGAACGGGCGGCGGCGGAGGCGG
GTAGTGAGGAGGAAGAAGATGAGGAAGAGGAGGATTGA

Synonyms

Publications