jgi.p|Nanoce1779_2|578470, mRNA_1939 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578470
Unique NamemRNA_1939
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1212
Alignment locationscaffold_4:400651..401862 -

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Properties
Property NameValue
TranscriptId578556
TrackFilteredModels2
ProteinId578470
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:400651..401862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578470gene_1939Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578470mRNA_1939-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1939CDS_1939Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1939 ID=mRNA_1939|Name=jgi.p|Nanoce1779_2|578470|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
ACAGCCCCATACAGCCACCATGCGTCAAACATGCACAATAGCGCTGCTCC
TGGTGGTGGCCACGACCCTGCTGGCTGTATCTGCATTCGTCCCCGCACTG
TCAAAGTCCACCACTACCACACGCCTCAGTTCCTGCAGCAGACCTCTGAG
CAGCAGACCTCTGAGCAGCAGCAGCAGATCACGCACCAACACCGCCCTGC
AAAGTATCAGCCTGGACTCGTTCTTCGGGAGGCGCACACAAAATTCCGCC
GGTAGCAGCGGCGACATGACCAGCGCGACCGCGCCCATCACCATCATGGA
AGTCCAACGGCAAGACCTGCGGATTATTGCATCTGTGTGTATTGAAAGTT
TTTTTGGGACGGCCGATAGGCTCAACCCCATCCGTTCCATGCAACTAGCC
ACGTTATTGGACGAGCAATTAACTGACTTGCGCTCCCGCTTTGGTGGGCG
TGCGGTGGGGGGCTCCGTTTTTTTGCAAGCCGTGGATGCGGACGGACAGA
TTCAAGGAGTGGTGGAAATTGGGGTGACTCAATCGATGAAGTGGGGCTTT
GAACAGTACGGGGTGCCTGTGCGTGATGAGCGACCTTATCTCGCTAATCT
ATCAGTGCGGCCTGGGGCGCGAAGGCAAGGGATAGGTCGCGCCTTGGTGC
AAGCATGTGAGGAGATTGTCCAGAATTCATGGGGCTTCGACGAGTTAATT
TTGCAAGTAGAAGACACGAACCAACAAGCCCGCAAGCTTTATCGTGATCT
TGGCTACGTTGATTTGTACACGGATGCAACTGGCCGTAAGTACGAGTTGA
GTGGAATGAGCATAAAGAATGTGCGAATCAATAAAGTCACGTTAAGAAAG
CCCTTAACGCCCTCTACGTCTGCGGTCAAGAACCCGTTGAACAGCCTAGC
AGCGATGTGGGCACAATTGTCCTTGTCGACGCAAGGGTAGGCGACGAGAC
AAGGGAAGGAAGGAGGGAAGAAATGAGGGATAGAAGGATGGATAGACGTG
TACATACAATAGAAAGAAGCGATGGCAAGTATGTGTAAGAGTAAGGTTCA
AGGCGATGGAATCAAATCGAATCGGAGAGGAGAGCTTTTCGTATGGCATG
CTCAACTCATAATTATTAGATAGAGGGAAGAGATAGGCGGCAGGCGTTTT
GTAAAAGACTTTAAAGAAGGGAAACGAAAGCAGCATGAGAAAGATAGCGA
CAAAAAATCACG
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protein sequence of jgi.p|Nanoce1779_2|578470

>mRNA_1939-protein ID=mRNA_1939-protein|Name=jgi.p|Nanoce1779_2|578470|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MRQTCTIALLLVVATTLLAVSAFVPALSKSTTTTRLSSCSRPLSSRPLSS
SSRSRTNTALQSISLDSFFGRRTQNSAGSSGDMTSATAPITIMEVQRQDL
RIIASVCIESFFGTADRLNPIRSMQLATLLDEQLTDLRSRFGGRAVGGSV
FLQAVDADGQIQGVVEIGVTQSMKWGFEQYGVPVRDERPYLANLSVRPGA
RRQGIGRALVQACEEIVQNSWGFDELILQVEDTNQQARKLYRDLGYVDLY
TDATGRKYELSGMSIKNVRINKVTLRKPLTPSTSAVKNPLNSLAAMWAQL
SLSTQG*
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mRNA from alignment at scaffold_4:400651..401862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1939 ID=mRNA_1939|Name=jgi.p|Nanoce1779_2|578470|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp|location=Sequence derived from alignment at scaffold_4:400651..401862- (Nannochloropsis oceanica)
ACAGCCCCATACAGCCACCATGCGTCAAACATGCACAATAGCGCTGCTCC
TGGTGGTGGCCACGACCCTGCTGGCTGTATCTGCATTCGTCCCCGCACTG
TCAAAGTCCACCACTACCACACGCCTCAGTTCCTGCAGCAGACCTCTGAG
CAGCAGACCTCTGAGCAGCAGCAGCAGATCACGCACCAACACCGCCCTGC
AAAGTATCAGCCTGGACTCGTTCTTCGGGAGGCGCACACAAAATTCCGCC
GGTAGCAGCGGCGACATGACCAGCGCGACCGCGCCCATCACCATCATGGA
AGTCCAACGGCAAGACCTGCGGATTATTGCATCTGTGTGTATTGAAAGTT
TTTTTGGGACGGCCGATAGGCTCAACCCCATCCGTTCCATGCAACTAGCC
ACGTTATTGGACGAGCAATTAACTGACTTGCGCTCCCGCTTTGGTGGGCG
TGCGGTGGGGGGCTCCGTTTTTTTGCAAGCCGTGGATGCGGACGGACAGA
TTCAAGGAGTGGTGGAAATTGGGGTGACTCAATCGATGAAGTGGGGCTTT
GAACAGTACGGGGTGCCTGTGCGTGATGAGCGACCTTATCTCGCTAATCT
ATCAGTGCGGCCTGGGGCGCGAAGGCAAGGGATAGGTCGCGCCTTGGTGC
AAGCATGTGAGGAGATTGTCCAGAATTCATGGGGCTTCGACGAGTTAATT
TTGCAAGTAGAAGACACGAACCAACAAGCCCGCAAGCTTTATCGTGATCT
TGGCTACGTTGATTTGTACACGGATGCAACTGGCCGTAAGTACGAGTTGA
GTGGAATGAGCATAAAGAATGTGCGAATCAATAAAGTCACGTTAAGAAAG
CCCTTAACGCCCTCTACGTCTGCGGTCAAGAACCCGTTGAACAGCCTAGC
AGCGATGTGGGCACAATTGTCCTTGTCGACGCAAGGGTAGGCGACGAGAC
AAGGGAAGGAAGGAGGGAAGAAATGAGGGATAGAAGGATGGATAGACGTG
TACATACAATAGAAAGAAGCGATGGCAAGTATGTGTAAGAGTAAGGTTCA
AGGCGATGGAATCAAATCGAATCGGAGAGGAGAGCTTTTCGTATGGCATG
CTCAACTCATAATTATTAGATAGAGGGAAGAGATAGGCGGCAGGCGTTTT
GTAAAAGACTTTAAAGAAGGGAAACGAAAGCAGCATGAGAAAGATAGCGA
CAAAAAATCACG
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Coding sequence (CDS) from alignment at scaffold_4:400651..401862-

>mRNA_1939 ID=mRNA_1939|Name=jgi.p|Nanoce1779_2|578470|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at scaffold_4:400651..401862- (Nannochloropsis oceanica)
ATGCGTCAAACATGCACAATAGCGCTGCTCCTGGTGGTGGCCACGACCCT
GCTGGCTGTATCTGCATTCGTCCCCGCACTGTCAAAGTCCACCACTACCA
CACGCCTCAGTTCCTGCAGCAGACCTCTGAGCAGCAGACCTCTGAGCAGC
AGCAGCAGATCACGCACCAACACCGCCCTGCAAAGTATCAGCCTGGACTC
GTTCTTCGGGAGGCGCACACAAAATTCCGCCGGTAGCAGCGGCGACATGA
CCAGCGCGACCGCGCCCATCACCATCATGGAAGTCCAACGGCAAGACCTG
CGGATTATTGCATCTGTGTGTATTGAAAGTTTTTTTGGGACGGCCGATAG
GCTCAACCCCATCCGTTCCATGCAACTAGCCACGTTATTGGACGAGCAAT
TAACTGACTTGCGCTCCCGCTTTGGTGGGCGTGCGGTGGGGGGCTCCGTT
TTTTTGCAAGCCGTGGATGCGGACGGACAGATTCAAGGAGTGGTGGAAAT
TGGGGTGACTCAATCGATGAAGTGGGGCTTTGAACAGTACGGGGTGCCTG
TGCGTGATGAGCGACCTTATCTCGCTAATCTATCAGTGCGGCCTGGGGCG
CGAAGGCAAGGGATAGGTCGCGCCTTGGTGCAAGCATGTGAGGAGATTGT
CCAGAATTCATGGGGCTTCGACGAGTTAATTTTGCAAGTAGAAGACACGA
ACCAACAAGCCCGCAAGCTTTATCGTGATCTTGGCTACGTTGATTTGTAC
ACGGATGCAACTGGCCGTAAGTACGAGTTGAGTGGAATGAGCATAAAGAA
TGTGCGAATCAATAAAGTCACGTTAAGAAAGCCCTTAACGCCCTCTACGT
CTGCGGTCAAGAACCCGTTGAACAGCCTAGCAGCGATGTGGGCACAATTG
TCCTTGTCGACGCAAGGGTAG
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Synonyms
Publications