jgi.p|Nanoce1779_2|551548, mRNA_1938 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|551548
Unique Name	mRNA_1938
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2504
Alignment location	scaffold_4:397729..400649 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	551634
Track	FilteredModels2
ProteinId	551548

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:397729..400649 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551548	gene_1938	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551548	mRNA_1938-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1938	CDS_1938	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:397729..400649+
coding sequence from alignment at scaffold_4:397729..400649+

mRNA sequence

>mRNA_1938 ID=mRNA_1938|Name=jgi.p|Nanoce1779_2|551548|organism=Nannochloropsis oceanica|type=mRNA|length=2504bp
CCCACCCACACTCCCCGCCACCTCAGCAAACACCCTCGAATCCGCGTCCC
TTAGCACCTGCAACACCAAGGCCCTCATTTTATTCACCGTCACATTCCAA
TGCATCTCCCCCCCTCGAAACACACTGCTAAACAACCCCCGAATCATCAC
CGGTGCAAATTTCGTCGTGAACCCTACCATCACCCTTTCCTTCCACAACG
TCAAAGCCTTCTCCACGCACCGGCTGTGGTCCGATGCCAAGCAGTGCGCC
AACCTGGGAAGCAATGATGGCAGAATATACTCAAAATCTTCATCCGAAAA
GAAATGAAGCAATGCGGCGACCTCGTGCAGACATAAAACTTCTTTGGGCG
TGTTGCTTCGGTACCCTTCCGGCCAGCTTTTCAACAACTCTTTCATTATG
GGTAGCGCGAATGCCCCACGGTCTCGTTCCAGGTATTGAGTCAAGCAAAA
AACGAGGGGCTCGTGGTAGAGCTGGATGACTGGGATCTGGTCCCGCCATT
CGTACATGTCGTCATTATGGTGCAGGGGAAGGAGGAGGGCGAGGAGGAGG
CGACTGTGGACATCAGTGAGAGGAGCGGCGAAACCCTTGATTATCTGTCC
GAGCACTTCGAGCAAGGGTGCCACAGCCATACTCTTCTTGCCAGTATTGA
TAAAGGTCGTCAAAAACCGGGCGATGAGCGCGCGAAGGAGGGGGCGGGCG
GAAGGAAAGTCCTGGTAGAGCAAGTGCAGTAGCTCCCGCAAAAACGTGTG
TTCAGTTTCGAGGGCGGCATCGAAGCGGGAGAGAACCGCGCGAAGTAAAT
CGGAAGTGATGGCCTCGGAGGCAGCTTGGGGAGTGTACTCTGGCATGGTC
ATGATGTAGGAGAGAAGGGATTCGGTTTGCTGGACCACTTCGGCCCGACC
GTCCTTCCAAGCGGCGCGTAGGAGGTCAAAGAAGAGAGTGTAGGTTGTGC
CGTCGAAGTCGTCGCCGAAGTCCCGTAATTCGTTGGCGGCTTGCATACCG
AGGAGTTGAGTAAATGCTAGGGACTGTAAGAGGTGGGTGGGGTTTGGTTT
GGGTCGTGTAGAAGGGTGGCTGGGTTCCTTGAGAAGAGAGAGCGGTACTG
GAAAGAGAGACACGCTCTGGGCGGCCATAGCTACGGATCAAGTAACAAAG
TATGTTTCTGGGCTTAAATAGACTTGGTTGGGACAGGCAATTGGCTGTAG
ACTTCCGGGGGGTACTTTACACACACAAAAAAAGGTACAGGTCAACCCAT
GTGCCCCCCCCCCCTCCTTTCCACCGTATGCCTCTGTTCTACATACCTCA
AAGCCTGCTGTCAAGGCATAGGAATCGCGCTGGAAAATGCGGCGCAACAG
TGTCAGTGGACTAGCTAGTTCGTCTTCCTCCCCGTCCTCCATGTCCCGCG
TCCCATCCTCGTTCATGACCCACATGCGTCCTTGCGGTATAGGAGGGGCT
GAAGGAAAGGGAGGGGAGGTCGACGACATCGTCAGAGAGAGAGAGAGAGA
GCCGGAAGCAGAAGCGAGAGCAGCAATCTCAAGCTTGCTTGTCTGTCCCT
GTGATTCGGGAATGAAGGATGAAGGAAGAACTGCGTGAGACGGACTCGAC
GTACGTCGTTCGAGAGGAGGGCACGTCAAATCACAGGCTATGGATTCAGT
TGCAGTACAGGATAACCAATCTGACAGCCTGGCTGTCCCAGGGGACCGCA
TTGGTCGCCTCTCGTCCCATCGAGCGGGCCCAGGCACATATGCTATGGGT
AGCCACATCTATGCAAGCTCTCTAGGTCGCGTCCAAACTGTCCAATCCGA
CGACCCTGCCGCACTCCCCATCCTCCAAGTCCTCAATATCACGAAGATTG
GTGGCCACAGTAGTGGGGGAACAGACGTAGTGCTGGAAGTGGGACATGTC
GTCCTCACGCGGGTCCTTCGCATCACAAGTAAGCAAGCCCACGTTGAAGT
AATTGCGATGGGTCGCATCACCCTGCGACAAACCTGTCAAGGTATTATAA
AAAAGGAAGACGTCCGAGAACACGAAATCGATCGCGTAGAGATCCACAAG
TGCTTTCGACCTGGGGATTTAGTGAGGGCAAGGGTGGTGTCACTAGGAGA
CAGCAGGCAGTACTATCTTAGCACGGCGGAGAGCGAGTTAGGTGTCACGT
ATGCGAAAAGTCAGACGCATGTTGGGGAGGGAGGGGGGGAGGGGGGAGGG
AGCGTGATGGTGCCGGTGAGTTGGGAGAAGATGGTGGATCCAATAACTAA
AGTGACTGAGGACAGGAAGGTCGCCAAGCCGGTATCGATTGAGAAGAAGG
AGGAAGGGGAGGAAGAGATGACGACCGGTTGAGGTGGAGAGAGGAGGAAG
GAAAGGTAGATTGTACAAAGTGGGGACATGAGTGGGGCGTGTTTGGATGA
CGGCGGATTGGAGGAAAATAAAACGACATGTAATTCGTATAAGAGAAGCG
AGATTCGAATAAGGATGAAAATGAGAAAATGGATGGAGGACAGGCATGTT
GTAG

protein sequence of jgi.p|Nanoce1779_2|551548

>mRNA_1938-protein ID=mRNA_1938-protein|Name=jgi.p|Nanoce1779_2|551548|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MDSVAVQDNQSDSLAVPGDRIGRLSSHRAGPGTYAMGSHIYASSLGRVQT
VQSDDPAALPILQVLNITKIGGHSSGGTDVVLEVGHVVLTRVLRITSKQA
HVEVIAMGRITLRQTCQGIIKKEDVREHEIDRVEIHKCFRPGDLVRARVV
SLGDSRQYYLSTAESELGVTYAKSQTHVGEGGGEGGGSVMVPVSWEKMVD
PITKVTEDRKVAKPVSIEKKEEGEEEMTTG*

mRNA from alignment at scaffold_4:397729..400649+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1938 ID=mRNA_1938|Name=jgi.p|Nanoce1779_2|551548|organism=Nannochloropsis oceanica|type=mRNA|length=2921bp|location=Sequence derived from alignment at scaffold_4:397729..400649+ (Nannochloropsis oceanica)
CCCACCCACACTCCCCGCCACCTCAGCAAACACCCTCGAATCCGCGTCCC
TTAGCACCTGCAACACCAAGGCCCTCATTTTATTCACCGTCACATTCCAA
TGCATCTCCCCCCCTCGAAACACACTGCTAAACAACCCCCGAATCATCAC
CGGTGCAAATTTCGTCGTGAACCCTACCATCACCCTTTCCTTCCACAACG
TCAAAGCCTTCTCCACGCACCGGCTGTGGTCCGATGCCAAGCAGTGCGCC
AACCTGGGAAGCAATGATGGCAGAATATACTCAAAATCTTCATCCGAAAA
GAAATGAAGCAATGCGGCGACCTCGTGCAGACATAAAACTTCTTTGGGCG
TGTTGCTTCGGTACCCTTCCGGCCAGCTTTTCAACAACTCTTTCATTATG
GGTAGCGCGAATGCCCCACGGTCTCGTTCCAGGTATTGAGTCAAGCAAAA
AACGAGGGGCTCGTGGTAGAGCTGGATGACTGGGATCTGGTCCCGCCATT
CGTACATGTCGTCATTATGGTGCAGGGGAAGGAGGAGGGCGAGGAGGAGG
CGACTGTGGACATCAGTGAGAGGAGCGGCGAAACCCTTGATTATCTGTCC
GAGCACTTCGAGCAAGGGTGCCACAGCCATACTCTTCTTGCCAGTATTGA
TAAAGGTCGTCAAAAACCGGGCGATGAGCGCGCGAAGGAGGGGGCGGGCG
GAAGGAAAGTCCTGGTAGAGCAAGTGCAGTAGCTCCCGCAAAAACGTGTG
TTCAGTTTCGAGGGCGGCATCGAAGCGGGAGAGAACCGCGCGAAGTAAAT
CGGAAGTGATGGCCTCGGAGGCAGCTTGGGGAGTGTACTCTGGCATGGTC
ATGATGTAGGAGAGAAGGGATTCGGTTTGCTGGACCACTTCGGCCCGACC
GTCCTTCCAAGCGGCGCGTAGGAGGTCAAAGAAGAGAGTGTAGGTTGTGC
CGTCGAAGTCGTCGCCGAAGTCCCGTAATTCGTTGGCGGCTTGCATACCG
AGGAGTTGAGTAAATGCTAGGGACTGTAAGAGGTGGGTGGGGTTTGGTTT
GGGTCGTGTAGAAGGGTGGCTGGGTTCCTTGAGAAGAGAGAGCGGTACTG
GAAAGAGAGACACGCTCTGGGCGGCCATAGCTACGGATCAAGTAACAAAG
TATGTTTCTGGGCTTAAATAGACTTGGTTGGGACAGGCAATTGGCTGTAG
ACTTCCGGGGGGTACTTTACACACACAAAAAAAGGTACAGGTCAACCCAT
GTGCCCCCCCCCCCTCCTTTCCACCGTATGCCTCTGTTCTACATACCTCA
AAGCCTGCTGTCAAGGCATAGGAATCGCGCTGGAAAATGCGGCGCAACAG
TGTCAGTGGACTAGCTAGTTCGTCTTCCTCCCCGTCCTCCATGTCCCGCG
TCCCATCCTCGTTCATGACCCACATGCGTCCTTGCGGTATAGGAGGGGCT
GAAGGAAAGGGAGGGGAGGTCGACGACATCGTCAGAGAGAGAGAGAGAGA
GCCGGAAGCAGAAGCGAGAGCAGCAATCTCAAGCTTGCTTGTCTGTCCCT
GTGATTCGGGAATGAAGGATGAAGGAAGAACTGCGTGAGACGGACTCGAC
GTACGTCGTTCGAGAGGAGGGCACGTCAAATGTAAGCAATTGACCTCCTG
CCCATTCCTTGCCTTTTGTCCTGCCTCTAACCCCACACCACACCCACCAC
GTCAACCAGCACAGGCTATGGATTCAGTTGCAGTACAGGATAACCAATCT
GACAGCCTGGCTGTCCCAGGGGACCGCATTGGTCGCCTCTCGTCCCATCG
AGCGGGCCCAGGTACGTCGACGGCGTCGTGCGGTAGGAGGTAGAGCTACC
TGGGCAGTGCTTTTCGAGAGCAGGGCACACAAATATGCCGCTGTACGAGC
TGCAAGATTAAGATTCAAGTAATTCGTAACCGTATGCATTCATGGGAAGG
CAGTGAGGACGCTTTCTCCAATGGCGTCTCTCGCCCGTAATCCACGACTC
CCCGTCTCCACCTCCACCCCACCACCAAACGACAGGCACATATGCTATGG
GTAGCCACATCTATGCAAGCTCTCTAGGTCGCGTCCAAGTATGTAGAATT
TATTCGAAATGGAATCGCATGGTCCTTTTTTCTCCCAGTGCCTCCACTCA
CCCAGCATGACAACCTCATCGCCTTCCATCCCTTCTCCCACCTTACCGCA
TAGACTGTCCAATCCGACGACCCTGCCGCACTCCCCATCCTCCAAGTCCT
CAATATCACGAAGATTGGTGGCCACAGTAGTGGGGGAACAGACGTAGTGC
TGGAAGTGGGACATGTCGTCCTCACGCGGGTCCTTCGCATCACAAGTAAG
CAAGCCCACGTTGAAGTAATTGCGATGGGTCGCATCACCCTGCGACAAAC
CTGTCAAGGTATTATAAAAAAGGAAGACGTCCGAGAACACGAAATCGATC
GCGTAGAGATCCACAAGTGCTTTCGACCTGGGGATTTAGTGAGGGCAAGG
GTGGTGTCACTAGGAGACAGCAGGCAGTACTATCTTAGCACGGCGGAGAG
CGAGTTAGGTGTCACGTATGCGAAAAGTCAGACGCATGTTGGGGAGGGAG
GGGGGGAGGGGGGAGGGAGCGTGATGGTGCCGGTGAGTTGGGAGAAGATG
GTGGATCCAATAACTAAAGTGACTGAGGACAGGAAGGTCGCCAAGCCGGT
ATCGATTGAGAAGAAGGAGGAAGGGGAGGAAGAGATGACGACCGGTTGAG
GTGGAGAGAGGAGGAAGGAAAGGTAGATTGTACAAAGTGGGGACATGAGT
GGGGCGTGTTTGGATGACGGCGGATTGGAGGAAAATAAAACGACATGTAA
TTCGTATAAGAGAAGCGAGATTCGAATAAGGATGAAAATGAGAAAATGGA
TGGAGGACAGGCATGTTGTAG

Coding sequence (CDS) from alignment at scaffold_4:397729..400649+

>mRNA_1938 ID=mRNA_1938|Name=jgi.p|Nanoce1779_2|551548|organism=Nannochloropsis oceanica|type=CDS|length=2079bp|location=Sequence derived from alignment at scaffold_4:397729..400649+ (Nannochloropsis oceanica)
ATGGATTCAGTTGCAGTACAGGATAACCAATCTGACAGCCTGGCTGTCCC
AGGGGACCGCATTGGTCGCCTCTCGTCCCATCGAGCGGGCCCAGGCACAT
ATGCTATGGGTAGCCACATCTATGCAAGCTCTCTAGGTCGCGTCCAAACT
GTCCAATCCGACGACCCTGCCGCACTCCCCATCCTCCAAGTCCTCAATAT
CACGAAGATTGGTGGCCACAGTAGTGGGGGAACAGACGTAGTGCTGGAAG
TGGGACATGTCGTCCTCACGCGGGTCCTTCGCATCACAAGTAAGCAAGCC
CACGTTGAAGTAATTGCGATGGGTCGCATCACCCTGCGACAAACCTGTCA
AGGTATTATAAAAAAGGAAGACGTCCGAGAACACGAAATCGATCGCGTAG
AGATCCACAAGTGCTTTCGACCTGGGGATTTAGTGAGGGCAAGGGTGGTG
TCACTAGGAGACAGCAGGCAGTACTATCTTAGCACGGCGGAGAGCGAGTT
AGGTGTCACGTATGCGAAAAGTCAGACGCATGTTGGGGAGGGAGGGGGGG
AGGGGGGAGGGAGCGTGATGGTGCCGGTGAGTTGGGAGAAGATGGTGGAT
CCAATAACTAAAGTGACTGAGGACAGGAAGGTCGCCAAGCCGGTATCGAT
TGAGAAGAAGGAGGAAGGGGAGGAAGAGATGACGACCGGTTGAATGGATT
CAGTTGCAGTACAGGATAACCAATCTGACAGCCTGGCTGTCCCAGGGGAC
CGCATTGGTCGCCTCTCGTCCCATCGAGCGGGCCCAGGCACATATGCTAT
GGGTAGCCACATCTATGCAAGCTCTCTAGGTCGCGTCCAAACTGTCCAAT
CCGACGACCCTGCCGCACTCCCCATCCTCCAAGTCCTCAATATCACGAAG
ATTGGTGGCCACAGTAGTGGGGGAACAGACGTAGTGCTGGAAGTGGGACA
TGTCGTCCTCACGCGGGTCCTTCGCATCACAAGTAAGCAAGCCCACGTTG
AAGTAATTGCGATGGGTCGCATCACCCTGCGACAAACCTGTCAAGGTATT
ATAAAAAAGGAAGACGTCCGAGAACACGAAATCGATCGCGTAGAGATCCA
CAAGTGCTTTCGACCTGGGGATTTAGTGAGGGCAAGGGTGGTGTCACTAG
GAGACAGCAGGCAGTACTATCTTAGCACGGCGGAGAGCGAGTTAGGTGTC
ACGTATGCGAAAAGTCAGACGCATGTTGGGGAGGGAGGGGGGGAGGGGGG
AGGGAGCGTGATGGTGCCGGTGAGTTGGGAGAAGATGGTGGATCCAATAA
CTAAAGTGACTGAGGACAGGAAGGTCGCCAAGCCGGTATCGATTGAGAAG
AAGGAGGAAGGGGAGGAAGAGATGACGACCGGTTGAATGGATTCAGTTGC
AGTACAGGATAACCAATCTGACAGCCTGGCTGTCCCAGGGGACCGCATTG
GTCGCCTCTCGTCCCATCGAGCGGGCCCAGGCACATATGCTATGGGTAGC
CACATCTATGCAAGCTCTCTAGGTCGCGTCCAAACTGTCCAATCCGACGA
CCCTGCCGCACTCCCCATCCTCCAAGTCCTCAATATCACGAAGATTGGTG
GCCACAGTAGTGGGGGAACAGACGTAGTGCTGGAAGTGGGACATGTCGTC
CTCACGCGGGTCCTTCGCATCACAAGTAAGCAAGCCCACGTTGAAGTAAT
TGCGATGGGTCGCATCACCCTGCGACAAACCTGTCAAGGTATTATAAAAA
AGGAAGACGTCCGAGAACACGAAATCGATCGCGTAGAGATCCACAAGTGC
TTTCGACCTGGGGATTTAGTGAGGGCAAGGGTGGTGTCACTAGGAGACAG
CAGGCAGTACTATCTTAGCACGGCGGAGAGCGAGTTAGGTGTCACGTATG
CGAAAAGTCAGACGCATGTTGGGGAGGGAGGGGGGGAGGGGGGAGGGAGC
GTGATGGTGCCGGTGAGTTGGGAGAAGATGGTGGATCCAATAACTAAAGT
GACTGAGGACAGGAAGGTCGCCAAGCCGGTATCGATTGAGAAGAAGGAGG
AAGGGGAGGAAGAGATGACGACCGGTTGA

Synonyms

Publications