Properties
Property Name | Value |
TranscriptId | 578543 |
Track | FilteredModels2 |
ProteinId | 578457 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_4 | supercontig | scaffold_4:392529..396252 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1936 ID=mRNA_1936|Name=jgi.p|Nanoce1779_2|578457|organism=Nannochloropsis oceanica|type=mRNA|length=3724bp CGGCGATTGGCGACGAATGGCTGGTGAAGGGAAAGGGGGAAATGGAGGTG GGCAGCAGCAGCAGCAACAGGAGCAGCAGCAGGGGGGAGGAGGGAATGAC GTTGAGTTTTTGAAGGGAGAGAGCGAAGAGAAGGTGGCATCGATGATTAT GGACGTGGAACGAGGTGGTGTAATGAAGGCAGCGGAAAAGGAAAAGAAAG AGGAGGAGGACGACGACGAGCGCATAGAAGGTACCTTTGCTTTCTTGCCA CCGGAAGTCATCCGTGAGGGTGCAGTTCCTGACACGCTGGCTGATGCTTG GGCGTTGGGTTGTTTGCTCTACCAGTGCTTCACTGGCAAACCTCCAGTCT TCAATGAGCACCAGCATGAGGGCGACGCAGATATCAAGGCGCGTGTAGTA CGCTTCGCGGAGGAACGGCGCTCGAGCAGCAATGCGCTTTTTGAGGAAAG TACCGGCAGCACCAGCAGCACCAGTAGTAGTGCTGGCTTGGTCCTGAGTG AAGATGCCAAGAACTTGGTCAAGGGCCTTTTGACGGTAGAGCGGAGCAAG CGCCTAACCCTCGAGGCCGCAGCCGTGCATCCTTTCTTCACGGGCCAGGG CATCGACGTGTATGAACTGCACCGAAACCCGGCCATTCAGCTGGTCCAAG GAAGTGCCGGGCCGACGCCTGATGCAGCTTGGAATCGACGTCAATTTTCA GCGATTTGGGCGCCACTTCCGGGGAACTACAATTTTGTATCACACTCATA TGCCCTGCGACCCATTCCCGAGACGCCGTTGGAGCGCGGAGCGCCTTTTT CGTTCGAAAATCGCAGGTTTCATGAGGAGGATGGGTGGATGATGCCGTCG CCTGGGAATGGCAGGGGCCTACCTCTTCCACCAAAGCCACCAGGGGAGGA GAAGAAAACATGAAGAGTGGATACCAGACTGATATAAATGCCATACAAGT CCGGGGAGAACCAAAAAGTAGAAGAACATAAATAAGTGTGTGTGAAAAGG AAGACGAAGAAAAAAAGAAATATCTACCGTGTTCGCCCTTCTCTTGAGTA AGAGCGAATCTTCCGTCGGTTGACTATAGCCCTATTTACCAGTGACAATG AGGAATGCTGGTGGTCCTTATTCGGGTCCTCCTGATGGGAGGCGGAGGCG GTGTTGTTTCAAGGCAGGCGAAACCGAACGATAGATCTTGCGATAGAGTG AGATAAAAGATGCTACGGCAAGCTACAACCGTGCGTCGAAGTAATAAGCC GTACTGCATCAAATTTCTGGCGCAATTAGTCTCATGGCATCTCAACATCC GATACTCGCAACGGCGCCGCCACTGCCATATCAGCTTCCATGATCCGCAG CTCAAACATTTCATTGTCCTTGACATGCTCGGGTGTTGCTACTGCTACCA TGCGTATCCACCTTGTTGTCAGCAGTAGAGACTCCAATAGAAGGAGAGGG GTGGGGAGGTTGGACCTCCGCTCACAAACCGTATAAGTCCTTTTCGCCTT CGTCTTCGTCGTCGCCGCGCACTTTGTATACGCATGAAACTACTCACATT CCACACGCGCGCACGGGACAGGAAACTGGTACCTCAATCTTTACCACTCA TCGCGCCCTGATAATCTTCGAGGACTCTCCGAAAGAGCTGTCGACATGTC CTCATCATCATCATCCCTTTCACCCGCCTTCCACGTACACATCGCGTACC TACCCCCACAAATAGCACGACCATGCCCGACTCGCATCCTCCAATCAACA TCCTGCTCCGTGGCAAGAGTGGTGTGCATATGAAAAGCCTGACCATGAGC AACGATGGCCTCCCCACCCTCACCCCCACGCCTGACGAAGCCCTCGGCAC GCCCGTGCCTGGGGACATGACCGAGTTTTGCGCCGACGGCAGCGCCGTGG CTATTGTGACATCTGTCCCTTCCAGAAGTGTGCGAGTGGTGGACGTGGAC ACAGGCAAGGTACGATGGACTGTTGAAGGACGGAATATCCAAGCCTTGTC CTTCTCCCCGAAAGGCACATTTTTGCTTACCTGGGAGCGACTGGTCGCGG GCGGCGCGCCCCAAGAAGGCAACTGCACCGCTGCCACCACCAGCAAAGAG AGCAACGGCAGTGGTGAGGCAGCTACCGTCAAAGGCAACCTCTTAGTGTG GCGGGCCGAGGACGGGAAGCTGCTGGCAGGGTTCACCCAAAAAGCATTCC GCAAGCCTGACTGGCCAACCTTGCAATGGATACCCGACGAGAGCCTCTGC TTCCGCGGCACGACAACGGAAATTCAGGTCTATCCCGGACACGATATTGG AGCGGGAGCTATCAAGAAGTTTTCTGTTCCTGGGGGAGGGATGGGCTCGA TTCGTCTCAGTCCCAACGCCGCTGCTCCTCATCGCGTCGCGTGCTTTTTC CCTGAAGTCAAAGGGAAGCCTGCTTCGGTCCGCATTTACCAATATCCCGA GTTTGGCGTGGCATTGACATCCAAATCCTTCTTCAAAGCCCAAGAGGCCC ACCTGCGGTGGTCCCCCAATGGCCAAGCCGTTCTCATTCACACACACACG GACGTTGATACCTCCGGTGTGTCCTATTATGGTTCCACTGGCCTCTACCT CTTGCACGCCGACGGCAGCTATGAAGTCACGGTTCCCCTCCCTAAAGAAG GACCGATATCCGACGCTCAATGGGCACCGGCAGGTCCCGTGCAGTTTGTG GTGTTGGCGGGCCGGATGCCAGCGGCCGCGACGTTGTACAATATCAAGGC AGAATCAATTTTTGAGTTTGGACAGGCGCATAGGAATACGGTGAGTTTCA GCCCTCACGGTCGGTTTGTAGTACTGGCGGGCTTTGGAAATTTGGCGGGA GAGATGGATTTCTGGGACCGGAACAAGCAGAAGTTAATGGGGAGGAATAC GTCGCATTGTAGCGTGGGATATGGGTGGAGTCCGTGTGGGAGATATTTTA TGACGGCGACATTGGCGCCACGGATGAATGTGGATAATGCCGTTAAGCTG TTTAAATATGATGGTGACGGGCCTTTGCACAAGGCGGGGTTCGAGGATGC AACACTGTTCGAAGCCTGCTTTCGACCGGCGGCCCCAGGTGTGTTTCCTG ACCGGCCTGCGACCCCTCTACGCAAGGGGAGGAAGGAGTGCGAGTCGGGG TCGGCTACGGCTACTCCAGTGACCCCATCCCCCAAGCCCAAAGCCGTGTA CAGACCTCCGGGCTCAACGGGTGCACTGGCTGCCATGTTGCGTGCGGAGC GTGAGGCAGTAGCGGGACCAAGGAAGGTTGTGAATGGGAGGAGTAATGTT AGTGGTAGTGGGTATGCTGCGTTGGGAGGGTCGCCCTACATTCCGGGGTT GGCCCCTTTGGCCAATGCCGGAAGCAAGAGTGCCCTCAAGAAAAAGGCGC GCAAAGAGAAAAAGAAGGCAGCCGATGCAGTGGCCAAGGCACTGGCTGAC GCAGAGGCGGAAAGAGCAAAAGAGGAAGCCACTGCGGCAGCAGCACTGCG AACAGCGGCGGCGGAGGACCCAGTCAAAAGGAAAAAGGCATTGCAGAAAA AGCTCAAGCAGATTGATGAGCTGAAGGCACGGGCAGCGGGAGGGGAAGCG TTGAATGAGGACCAACAACAAAAACTGGCCAGCGAGAACGACTTGAGAGA GCAAGTGGCCAAGATGGCAATTTAATGGGGAGGGTGGTGGAAATGATGGA AAAAGCCACGAGCGATATAGCACT back to topprotein sequence of jgi.p|Nanoce1779_2|578457 >mRNA_1936-protein ID=mRNA_1936-protein|Name=jgi.p|Nanoce1779_2|578457|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp MPDSHPPINILLRGKSGVHMKSLTMSNDGLPTLTPTPDEALGTPVPGDMT EFCADGSAVAIVTSVPSRSVRVVDVDTGKVRWTVEGRNIQALSFSPKGTF LLTWERLVAGGAPQEGNCTAATTSKESNGSGEAATVKGNLLVWRAEDGKL LAGFTQKAFRKPDWPTLQWIPDESLCFRGTTTEIQVYPGHDIGAGAIKKF SVPGGGMGSIRLSPNAAAPHRVACFFPEVKGKPASVRIYQYPEFGVALTS KSFFKAQEAHLRWSPNGQAVLIHTHTDVDTSGVSYYGSTGLYLLHADGSY EVTVPLPKEGPISDAQWAPAGPVQFVVLAGRMPAAATLYNIKAESIFEFG QAHRNTVSFSPHGRFVVLAGFGNLAGEMDFWDRNKQKLMGRNTSHCSVGY GWSPCGRYFMTATLAPRMNVDNAVKLFKYDGDGPLHKAGFEDATLFEACF RPAAPGVFPDRPATPLRKGRKECESGSATATPVTPSPKPKAVYRPPGSTG ALAAMLRAEREAVAGPRKVVNGRSNVSGSGYAALGGSPYIPGLAPLANAG SKSALKKKARKEKKKAADAVAKALADAEAERAKEEATAAAALRTAAAEDP VKRKKALQKKLKQIDELKARAAGGEALNEDQQQKLASENDLREQVAKMAI * back to topmRNA from alignment at scaffold_4:392529..396252- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1936 ID=mRNA_1936|Name=jgi.p|Nanoce1779_2|578457|organism=Nannochloropsis oceanica|type=mRNA|length=3724bp|location=Sequence derived from alignment at scaffold_4:392529..396252- (Nannochloropsis oceanica) CGGCGATTGGCGACGAATGGCTGGTGAAGGGAAAGGGGGAAATGGAGGTG
GGCAGCAGCAGCAGCAACAGGAGCAGCAGCAGGGGGGAGGAGGGAATGAC
GTTGAGTTTTTGAAGGGAGAGAGCGAAGAGAAGGTGGCATCGATGATTAT
GGACGTGGAACGAGGTGGTGTAATGAAGGCAGCGGAAAAGGAAAAGAAAG
AGGAGGAGGACGACGACGAGCGCATAGAAGGTACCTTTGCTTTCTTGCCA
CCGGAAGTCATCCGTGAGGGTGCAGTTCCTGACACGCTGGCTGATGCTTG
GGCGTTGGGTTGTTTGCTCTACCAGTGCTTCACTGGCAAACCTCCAGTCT
TCAATGAGCACCAGCATGAGGGCGACGCAGATATCAAGGCGCGTGTAGTA
CGCTTCGCGGAGGAACGGCGCTCGAGCAGCAATGCGCTTTTTGAGGAAAG
TACCGGCAGCACCAGCAGCACCAGTAGTAGTGCTGGCTTGGTCCTGAGTG
AAGATGCCAAGAACTTGGTCAAGGGCCTTTTGACGGTAGAGCGGAGCAAG
CGCCTAACCCTCGAGGCCGCAGCCGTGCATCCTTTCTTCACGGGCCAGGG
CATCGACGTGTATGAACTGCACCGAAACCCGGCCATTCAGCTGGTCCAAG
GAAGTGCCGGGCCGACGCCTGATGCAGCTTGGAATCGACGTCAATTTTCA
GCGATTTGGGCGCCACTTCCGGGGAACTACAATTTTGTATCACACTCATA
TGCCCTGCGACCCATTCCCGAGACGCCGTTGGAGCGCGGAGCGCCTTTTT
CGTTCGAAAATCGCAGGTTTCATGAGGAGGATGGGTGGATGATGCCGTCG
CCTGGGAATGGCAGGGGCCTACCTCTTCCACCAAAGCCACCAGGGGAGGA
GAAGAAAACATGAAGAGTGGATACCAGACTGATATAAATGCCATACAAGT
CCGGGGAGAACCAAAAAGTAGAAGAACATAAATAAGTGTGTGTGAAAAGG
AAGACGAAGAAAAAAAGAAATATCTACCGTGTTCGCCCTTCTCTTGAGTA
AGAGCGAATCTTCCGTCGGTTGACTATAGCCCTATTTACCAGTGACAATG
AGGAATGCTGGTGGTCCTTATTCGGGTCCTCCTGATGGGAGGCGGAGGCG
GTGTTGTTTCAAGGCAGGCGAAACCGAACGATAGATCTTGCGATAGAGTG
AGATAAAAGATGCTACGGCAAGCTACAACCGTGCGTCGAAGTAATAAGCC
GTACTGCATCAAATTTCTGGCGCAATTAGTCTCATGGCATCTCAACATCC
GATACTCGCAACGGCGCCGCCACTGCCATATCAGCTTCCATGATCCGCAG
CTCAAACATTTCATTGTCCTTGACATGCTCGGGTGTTGCTACTGCTACCA
TGCGTATCCACCTTGTTGTCAGCAGTAGAGACTCCAATAGAAGGAGAGGG
GTGGGGAGGTTGGACCTCCGCTCACAAACCGTATAAGTCCTTTTCGCCTT
CGTCTTCGTCGTCGCCGCGCACTTTGTATACGCATGAAACTACTCACATT
CCACACGCGCGCACGGGACAGGAAACTGGTACCTCAATCTTTACCACTCA
TCGCGCCCTGATAATCTTCGAGGACTCTCCGAAAGAGCTGTCGACATGTC
CTCATCATCATCATCCCTTTCACCCGCCTTCCACGTACACATCGCGTACC
TACCCCCACAAATAGCACGACCATGCCCGACTCGCATCCTCCAATCAACA
TCCTGCTCCGTGGCAAGAGTGGTGTGCATATGAAAAGCCTGACCATGAGC
AACGATGGCCTCCCCACCCTCACCCCCACGCCTGACGAAGCCCTCGGCAC
GCCCGTGCCTGGGGACATGACCGAGTTTTGCGCCGACGGCAGCGCCGTGG
CTATTGTGACATCTGTCCCTTCCAGAAGTGTGCGAGTGGTGGACGTGGAC
ACAGGCAAGGTACGATGGACTGTTGAAGGACGGAATATCCAAGCCTTGTC
CTTCTCCCCGAAAGGCACATTTTTGCTTACCTGGGAGCGACTGGTCGCGG
GCGGCGCGCCCCAAGAAGGCAACTGCACCGCTGCCACCACCAGCAAAGAG
AGCAACGGCAGTGGTGAGGCAGCTACCGTCAAAGGCAACCTCTTAGTGTG
GCGGGCCGAGGACGGGAAGCTGCTGGCAGGGTTCACCCAAAAAGCATTCC
GCAAGCCTGACTGGCCAACCTTGCAATGGATACCCGACGAGAGCCTCTGC
TTCCGCGGCACGACAACGGAAATTCAGGTCTATCCCGGACACGATATTGG
AGCGGGAGCTATCAAGAAGTTTTCTGTTCCTGGGGGAGGGATGGGCTCGA
TTCGTCTCAGTCCCAACGCCGCTGCTCCTCATCGCGTCGCGTGCTTTTTC
CCTGAAGTCAAAGGGAAGCCTGCTTCGGTCCGCATTTACCAATATCCCGA
GTTTGGCGTGGCATTGACATCCAAATCCTTCTTCAAAGCCCAAGAGGCCC
ACCTGCGGTGGTCCCCCAATGGCCAAGCCGTTCTCATTCACACACACACG
GACGTTGATACCTCCGGTGTGTCCTATTATGGTTCCACTGGCCTCTACCT
CTTGCACGCCGACGGCAGCTATGAAGTCACGGTTCCCCTCCCTAAAGAAG
GACCGATATCCGACGCTCAATGGGCACCGGCAGGTCCCGTGCAGTTTGTG
GTGTTGGCGGGCCGGATGCCAGCGGCCGCGACGTTGTACAATATCAAGGC
AGAATCAATTTTTGAGTTTGGACAGGCGCATAGGAATACGGTGAGTTTCA
GCCCTCACGGTCGGTTTGTAGTACTGGCGGGCTTTGGAAATTTGGCGGGA
GAGATGGATTTCTGGGACCGGAACAAGCAGAAGTTAATGGGGAGGAATAC
GTCGCATTGTAGCGTGGGATATGGGTGGAGTCCGTGTGGGAGATATTTTA
TGACGGCGACATTGGCGCCACGGATGAATGTGGATAATGCCGTTAAGCTG
TTTAAATATGATGGTGACGGGCCTTTGCACAAGGCGGGGTTCGAGGATGC
AACACTGTTCGAAGCCTGCTTTCGACCGGCGGCCCCAGGTGTGTTTCCTG
ACCGGCCTGCGACCCCTCTACGCAAGGGGAGGAAGGAGTGCGAGTCGGGG
TCGGCTACGGCTACTCCAGTGACCCCATCCCCCAAGCCCAAAGCCGTGTA
CAGACCTCCGGGCTCAACGGGTGCACTGGCTGCCATGTTGCGTGCGGAGC
GTGAGGCAGTAGCGGGACCAAGGAAGGTTGTGAATGGGAGGAGTAATGTT
AGTGGTAGTGGGTATGCTGCGTTGGGAGGGTCGCCCTACATTCCGGGGTT
GGCCCCTTTGGCCAATGCCGGAAGCAAGAGTGCCCTCAAGAAAAAGGCGC
GCAAAGAGAAAAAGAAGGCAGCCGATGCAGTGGCCAAGGCACTGGCTGAC
GCAGAGGCGGAAAGAGCAAAAGAGGAAGCCACTGCGGCAGCAGCACTGCG
AACAGCGGCGGCGGAGGACCCAGTCAAAAGGAAAAAGGCATTGCAGAAAA
AGCTCAAGCAGATTGATGAGCTGAAGGCACGGGCAGCGGGAGGGGAAGCG
TTGAATGAGGACCAACAACAAAAACTGGCCAGCGAGAACGACTTGAGAGA
GCAAGTGGCCAAGATGGCAATTTAATGGGGAGGGTGGTGGAAATGATGGA
AAAAGCCACGAGCGATATAGCACT back to topCoding sequence (CDS) from alignment at scaffold_4:392529..396252- >mRNA_1936 ID=mRNA_1936|Name=jgi.p|Nanoce1779_2|578457|organism=Nannochloropsis oceanica|type=CDS|length=1953bp|location=Sequence derived from alignment at scaffold_4:392529..396252- (Nannochloropsis oceanica) ATGCCCGACTCGCATCCTCCAATCAACATCCTGCTCCGTGGCAAGAGTGG TGTGCATATGAAAAGCCTGACCATGAGCAACGATGGCCTCCCCACCCTCA CCCCCACGCCTGACGAAGCCCTCGGCACGCCCGTGCCTGGGGACATGACC GAGTTTTGCGCCGACGGCAGCGCCGTGGCTATTGTGACATCTGTCCCTTC CAGAAGTGTGCGAGTGGTGGACGTGGACACAGGCAAGGTACGATGGACTG TTGAAGGACGGAATATCCAAGCCTTGTCCTTCTCCCCGAAAGGCACATTT TTGCTTACCTGGGAGCGACTGGTCGCGGGCGGCGCGCCCCAAGAAGGCAA CTGCACCGCTGCCACCACCAGCAAAGAGAGCAACGGCAGTGGTGAGGCAG CTACCGTCAAAGGCAACCTCTTAGTGTGGCGGGCCGAGGACGGGAAGCTG CTGGCAGGGTTCACCCAAAAAGCATTCCGCAAGCCTGACTGGCCAACCTT GCAATGGATACCCGACGAGAGCCTCTGCTTCCGCGGCACGACAACGGAAA TTCAGGTCTATCCCGGACACGATATTGGAGCGGGAGCTATCAAGAAGTTT TCTGTTCCTGGGGGAGGGATGGGCTCGATTCGTCTCAGTCCCAACGCCGC TGCTCCTCATCGCGTCGCGTGCTTTTTCCCTGAAGTCAAAGGGAAGCCTG CTTCGGTCCGCATTTACCAATATCCCGAGTTTGGCGTGGCATTGACATCC AAATCCTTCTTCAAAGCCCAAGAGGCCCACCTGCGGTGGTCCCCCAATGG CCAAGCCGTTCTCATTCACACACACACGGACGTTGATACCTCCGGTGTGT CCTATTATGGTTCCACTGGCCTCTACCTCTTGCACGCCGACGGCAGCTAT GAAGTCACGGTTCCCCTCCCTAAAGAAGGACCGATATCCGACGCTCAATG GGCACCGGCAGGTCCCGTGCAGTTTGTGGTGTTGGCGGGCCGGATGCCAG CGGCCGCGACGTTGTACAATATCAAGGCAGAATCAATTTTTGAGTTTGGA CAGGCGCATAGGAATACGGTGAGTTTCAGCCCTCACGGTCGGTTTGTAGT ACTGGCGGGCTTTGGAAATTTGGCGGGAGAGATGGATTTCTGGGACCGGA ACAAGCAGAAGTTAATGGGGAGGAATACGTCGCATTGTAGCGTGGGATAT GGGTGGAGTCCGTGTGGGAGATATTTTATGACGGCGACATTGGCGCCACG GATGAATGTGGATAATGCCGTTAAGCTGTTTAAATATGATGGTGACGGGC CTTTGCACAAGGCGGGGTTCGAGGATGCAACACTGTTCGAAGCCTGCTTT CGACCGGCGGCCCCAGGTGTGTTTCCTGACCGGCCTGCGACCCCTCTACG CAAGGGGAGGAAGGAGTGCGAGTCGGGGTCGGCTACGGCTACTCCAGTGA CCCCATCCCCCAAGCCCAAAGCCGTGTACAGACCTCCGGGCTCAACGGGT GCACTGGCTGCCATGTTGCGTGCGGAGCGTGAGGCAGTAGCGGGACCAAG GAAGGTTGTGAATGGGAGGAGTAATGTTAGTGGTAGTGGGTATGCTGCGT TGGGAGGGTCGCCCTACATTCCGGGGTTGGCCCCTTTGGCCAATGCCGGA AGCAAGAGTGCCCTCAAGAAAAAGGCGCGCAAAGAGAAAAAGAAGGCAGC CGATGCAGTGGCCAAGGCACTGGCTGACGCAGAGGCGGAAAGAGCAAAAG AGGAAGCCACTGCGGCAGCAGCACTGCGAACAGCGGCGGCGGAGGACCCA GTCAAAAGGAAAAAGGCATTGCAGAAAAAGCTCAAGCAGATTGATGAGCT GAAGGCACGGGCAGCGGGAGGGGAAGCGTTGAATGAGGACCAACAACAAA AACTGGCCAGCGAGAACGACTTGAGAGAGCAAGTGGCCAAGATGGCAATT TAA back to top
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