jgi.p|Nanoce1779_2|668692, mRNA_1935 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|668692
Unique Name	mRNA_1935
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2851
Alignment location	scaffold_4:389441..392291 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	668778
Track	FilteredModels2
ProteinId	668692

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:389441..392291 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668692	gene_1935	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668692	mRNA_1935-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1935	CDS_1935	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:389441..392291-
coding sequence from alignment at scaffold_4:389441..392291-

mRNA sequence

>mRNA_1935 ID=mRNA_1935|Name=jgi.p|Nanoce1779_2|668692|organism=Nannochloropsis oceanica|type=mRNA|length=2851bp
AGACTACGACAGCGCTCACAGACAGAGAGATAGGGACATATCGCCTTATA
AGCTTCGCGGCGGAGGCTCCATGATGGAGCCATCATCATCGCCGGCGACA
AGTCCCTCGACTCCTTCAACGCCCCTATTCACCATGGCCAAGGAGGACTT
GCCGGCCCTCTTTTCCCAAATGGAGGACGCCGTTGCCGCCCTGGAGCCCT
CACCACCTAACTCTCCCGGTGTGGTACACAATCACCGGGACCATCATGAC
AGTGACGACGACATGGAACAGGAAGAAGAGCGTTTGCACGATAGCAGTGA
GAAGCTTCGGAGCCTCATGATGATGCGCCGAGGTGCGGGACAGCGCTACG
ACGAGTATCAGGCAAAGTCATCGTCATTGGATCCAAATGCAAATGTGCCA
CGCCAGTTGATTTTTGATGCAGTCGGTGCCACTTCTTCGTCATTGTGCCC
TACATCCGCCCTTGACATCGACGTCTCTTCATCCTCGTCACCCCCCTCCT
GTCCTTCCTCCTTGCACGGGTACTCCACACCCCTTCGCTGCGCTCCGACC
ACCGATCCATCGTCATCCTTGTCGGCTTCTTATAATGGTACAACTTCTAC
CTCGTCTTCGACTCCGGCTCAACTGCAATATTGGGACTGTACTGACCATC
AAAGGGAGGGCACGCCAATGTCGCCAACCCGCACAGCGGGCTTTGCGACG
CCACTTGCCTTGAAAACGCCTGAACAAGAATCAATAATTGCGAGGAATGA
CGAGAAGGTGGAAAACTTGTGCCTGCGTCGAGTGCCCTCTGCCTTTCCGC
TGCCATCCGCAGGCGAGGAGGATTTGGAGGTTCTTGGTGATGTTGCCGTG
GATCGGAGAGCAGGGGGTGACGACAACGAAAACAGCACGGACATCATAAG
GATTCAGGCGTCTAGTAGCATTGCCAGCAGTCTTGCTTCTATTATTAGCT
GTCTCCCACCCGCGTCGAGCACCAGAGAACGAAGTGTTTGGGGCGAGGAG
GACAAGGACATGCATGAGGTAGGATGTGCCTCTAGGTGCCTGAGTGAGCT
GTCGATCCAGCAGCGATTCTTCGGTCTGAGGGATGTGGCTTCAGGTGAAA
AATGCAACGATAAATCGTCTTTCTCTGTCTCCAAGCATGTCATGGTTACA
TCGGCTTGGTGTCGGCACTTGGCCTTCATTGCCCTACGGCCTGACGTTCC
ATGTGGCGACATAAGCGATCTGGTCACTGAGGTGCTAAGGGAGCAGGGAC
TCATAGTCCGAAAGCGCCAAGGTTCCCATATTGTGGGAGGGATGAAAGTG
GTAGACAAGGAAGGACAGGAAAAAGGTGGCATCTGTGGGAATGGAATTCA
AGCGGAGTGGAGCTTTGTGGACATTCAGGTGGCATTGGATCGACAAGACA
GGGAGCGCGTTTTACTTGTGCGTTTCATTATTTCCACCGAGACGGAGGAG
GGGGGCTATAACACCGATTGTAAGAAGATCATGACACCGTCAATGGGGAG
AAGATCGTCGGTAGCAGGTGTGGAAGGAGGGAGTGATGAACAGGGAACTT
TGTTGGAAGCGCTCAAGGCCAAGCTGTTCGGCTCGGGTCTCAATAAAAGA
GCACTGCTGCGGGATGTGGATGCTAATGTGAGCAGCAGTAGCAGCAGCAA
ATCTAGCAAGAGCATAACGCTCGACCCTCAATACCTTCATCAGCTTGAAG
ACCTTGCTCGCGAAGATATGCACAGGACTTTGGAAGCGACAGCACGAAAT
CTGGAGGAGTACGTATGCGCCGCTGAAGAGAAATGCGAGCAACTCAGGTT
ATTGATGGAGCCCATGTATTTGCAGTATAAGCTTGAGAAAGCCCCGTCAA
TCGCTAAGGCTTTGCCTTTGTCATTCTACCCGCTAGACTTGCTTGCGGCT
GATGGGACTATGGGAGGAGATGAGCAGATCAGCCTGGAGGAAAAAACACT
TGTTGATGATCGGTTGGCATACATCGATGCGTTAAAGGAGACGGCCTGGC
GATGTTGCTTGATGCAATGTGACGCTGAAATGACGGCACGCATGCAAAGG
AAGAATTTGCAGGTCCTGGATCGTATGGCGAAGTGCACTGAATACCAGAG
ATTGCTAATTGCGAACTTGCGCGATAATGAACGCAGGACATCTGTGCCGC
TATTTCAAGCTTTTAAGAATCAGATTGGCCATGATGGTGGGATTTATGAC
GATGAGGATGTGGAGACGCCCTTGTATTATTGTCGCTGCATAATTGGGAG
CCGCCCCGCAACACTGTTCATGACTTACGAGCACTTAGCCTTTGTGAGCA
ATGTGCCTGGATTTGGGTGGTCGCGTCAGATTCGCTATGATGAGATTTCA
ACGTGTGGATTGGCATCTCTTCGGATTGGTATTACGCTGGCCAAAGCCAT
TGCAATCCGAGCTCCGACGGCCAGAGTTGCTTCGCCCATGCCCGTAAAGA
GGCCTGGTGGTGCCAGTGGCAAGGCAGCCCCCCGCAGCAGCTGTAGTAGA
AGTATTAGAACTAGTGCTGCCGTTGCATCTAGAAAAGCCGAGGAGGAGTC
GCTCGTCTTCAGCACCATGATCGAACCTGAGCGTTTGCTGGACCTCATTA
AGTTGTTAATTACTCTCAATGACGGAAATATCAAGGACGCGGCCTCGATG
GGCTCAGAACTTCCTTCGGAAGAAGGACGACAGAATATCCAAGAGCAGGC
TTCGTCGAATCTAGCGCGTGAGCTGGAGGCAGCCTCGCCCTTTTTGGTGA
ATTAGTACAATGACCGAAGAGTATTTGTTAATTGTTGAGCAGAGTAAAGC
AATGGAGTAAGATCAATGACGATGAAATGAAATAAGTCGAATCGCTGATT
G

protein sequence of jgi.p|Nanoce1779_2|668692

>mRNA_1935-protein ID=mRNA_1935-protein|Name=jgi.p|Nanoce1779_2|668692|organism=Nannochloropsis oceanica|type=polypeptide|length=895bp
MMEPSSSPATSPSTPSTPLFTMAKEDLPALFSQMEDAVAALEPSPPNSPG
VVHNHRDHHDSDDDMEQEEERLHDSSEKLRSLMMMRRGAGQRYDEYQAKS
SSLDPNANVPRQLIFDAVGATSSSLCPTSALDIDVSSSSSPPSCPSSLHG
YSTPLRCAPTTDPSSSLSASYNGTTSTSSSTPAQLQYWDCTDHQREGTPM
SPTRTAGFATPLALKTPEQESIIARNDEKVENLCLRRVPSAFPLPSAGEE
DLEVLGDVAVDRRAGGDDNENSTDIIRIQASSSIASSLASIISCLPPASS
TRERSVWGEEDKDMHEVGCASRCLSELSIQQRFFGLRDVASGEKCNDKSS
FSVSKHVMVTSAWCRHLAFIALRPDVPCGDISDLVTEVLREQGLIVRKRQ
GSHIVGGMKVVDKEGQEKGGICGNGIQAEWSFVDIQVALDRQDRERVLLV
RFIISTETEEGGYNTDCKKIMTPSMGRRSSVAGVEGGSDEQGTLLEALKA
KLFGSGLNKRALLRDVDANVSSSSSSKSSKSITLDPQYLHQLEDLAREDM
HRTLEATARNLEEYVCAAEEKCEQLRLLMEPMYLQYKLEKAPSIAKALPL
SFYPLDLLAADGTMGGDEQISLEEKTLVDDRLAYIDALKETAWRCCLMQC
DAEMTARMQRKNLQVLDRMAKCTEYQRLLIANLRDNERRTSVPLFQAFKN
QIGHDGGIYDDEDVETPLYYCRCIIGSRPATLFMTYEHLAFVSNVPGFGW
SRQIRYDEISTCGLASLRIGITLAKAIAIRAPTARVASPMPVKRPGGASG
KAAPRSSCSRSIRTSAAVASRKAEEESLVFSTMIEPERLLDLIKLLITLN
DGNIKDAASMGSELPSEEGRQNIQEQASSNLARELEAASPFLVN*

mRNA from alignment at scaffold_4:389441..392291-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1935 ID=mRNA_1935|Name=jgi.p|Nanoce1779_2|668692|organism=Nannochloropsis oceanica|type=mRNA|length=2851bp|location=Sequence derived from alignment at scaffold_4:389441..392291- (Nannochloropsis oceanica)
AGACTACGACAGCGCTCACAGACAGAGAGATAGGGACATATCGCCTTATA
AGCTTCGCGGCGGAGGCTCCATGATGGAGCCATCATCATCGCCGGCGACA
AGTCCCTCGACTCCTTCAACGCCCCTATTCACCATGGCCAAGGAGGACTT
GCCGGCCCTCTTTTCCCAAATGGAGGACGCCGTTGCCGCCCTGGAGCCCT
CACCACCTAACTCTCCCGGTGTGGTACACAATCACCGGGACCATCATGAC
AGTGACGACGACATGGAACAGGAAGAAGAGCGTTTGCACGATAGCAGTGA
GAAGCTTCGGAGCCTCATGATGATGCGCCGAGGTGCGGGACAGCGCTACG
ACGAGTATCAGGCAAAGTCATCGTCATTGGATCCAAATGCAAATGTGCCA
CGCCAGTTGATTTTTGATGCAGTCGGTGCCACTTCTTCGTCATTGTGCCC
TACATCCGCCCTTGACATCGACGTCTCTTCATCCTCGTCACCCCCCTCCT
GTCCTTCCTCCTTGCACGGGTACTCCACACCCCTTCGCTGCGCTCCGACC
ACCGATCCATCGTCATCCTTGTCGGCTTCTTATAATGGTACAACTTCTAC
CTCGTCTTCGACTCCGGCTCAACTGCAATATTGGGACTGTACTGACCATC
AAAGGGAGGGCACGCCAATGTCGCCAACCCGCACAGCGGGCTTTGCGACG
CCACTTGCCTTGAAAACGCCTGAACAAGAATCAATAATTGCGAGGAATGA
CGAGAAGGTGGAAAACTTGTGCCTGCGTCGAGTGCCCTCTGCCTTTCCGC
TGCCATCCGCAGGCGAGGAGGATTTGGAGGTTCTTGGTGATGTTGCCGTG
GATCGGAGAGCAGGGGGTGACGACAACGAAAACAGCACGGACATCATAAG
GATTCAGGCGTCTAGTAGCATTGCCAGCAGTCTTGCTTCTATTATTAGCT
GTCTCCCACCCGCGTCGAGCACCAGAGAACGAAGTGTTTGGGGCGAGGAG
GACAAGGACATGCATGAGGTAGGATGTGCCTCTAGGTGCCTGAGTGAGCT
GTCGATCCAGCAGCGATTCTTCGGTCTGAGGGATGTGGCTTCAGGTGAAA
AATGCAACGATAAATCGTCTTTCTCTGTCTCCAAGCATGTCATGGTTACA
TCGGCTTGGTGTCGGCACTTGGCCTTCATTGCCCTACGGCCTGACGTTCC
ATGTGGCGACATAAGCGATCTGGTCACTGAGGTGCTAAGGGAGCAGGGAC
TCATAGTCCGAAAGCGCCAAGGTTCCCATATTGTGGGAGGGATGAAAGTG
GTAGACAAGGAAGGACAGGAAAAAGGTGGCATCTGTGGGAATGGAATTCA
AGCGGAGTGGAGCTTTGTGGACATTCAGGTGGCATTGGATCGACAAGACA
GGGAGCGCGTTTTACTTGTGCGTTTCATTATTTCCACCGAGACGGAGGAG
GGGGGCTATAACACCGATTGTAAGAAGATCATGACACCGTCAATGGGGAG
AAGATCGTCGGTAGCAGGTGTGGAAGGAGGGAGTGATGAACAGGGAACTT
TGTTGGAAGCGCTCAAGGCCAAGCTGTTCGGCTCGGGTCTCAATAAAAGA
GCACTGCTGCGGGATGTGGATGCTAATGTGAGCAGCAGTAGCAGCAGCAA
ATCTAGCAAGAGCATAACGCTCGACCCTCAATACCTTCATCAGCTTGAAG
ACCTTGCTCGCGAAGATATGCACAGGACTTTGGAAGCGACAGCACGAAAT
CTGGAGGAGTACGTATGCGCCGCTGAAGAGAAATGCGAGCAACTCAGGTT
ATTGATGGAGCCCATGTATTTGCAGTATAAGCTTGAGAAAGCCCCGTCAA
TCGCTAAGGCTTTGCCTTTGTCATTCTACCCGCTAGACTTGCTTGCGGCT
GATGGGACTATGGGAGGAGATGAGCAGATCAGCCTGGAGGAAAAAACACT
TGTTGATGATCGGTTGGCATACATCGATGCGTTAAAGGAGACGGCCTGGC
GATGTTGCTTGATGCAATGTGACGCTGAAATGACGGCACGCATGCAAAGG
AAGAATTTGCAGGTCCTGGATCGTATGGCGAAGTGCACTGAATACCAGAG
ATTGCTAATTGCGAACTTGCGCGATAATGAACGCAGGACATCTGTGCCGC
TATTTCAAGCTTTTAAGAATCAGATTGGCCATGATGGTGGGATTTATGAC
GATGAGGATGTGGAGACGCCCTTGTATTATTGTCGCTGCATAATTGGGAG
CCGCCCCGCAACACTGTTCATGACTTACGAGCACTTAGCCTTTGTGAGCA
ATGTGCCTGGATTTGGGTGGTCGCGTCAGATTCGCTATGATGAGATTTCA
ACGTGTGGATTGGCATCTCTTCGGATTGGTATTACGCTGGCCAAAGCCAT
TGCAATCCGAGCTCCGACGGCCAGAGTTGCTTCGCCCATGCCCGTAAAGA
GGCCTGGTGGTGCCAGTGGCAAGGCAGCCCCCCGCAGCAGCTGTAGTAGA
AGTATTAGAACTAGTGCTGCCGTTGCATCTAGAAAAGCCGAGGAGGAGTC
GCTCGTCTTCAGCACCATGATCGAACCTGAGCGTTTGCTGGACCTCATTA
AGTTGTTAATTACTCTCAATGACGGAAATATCAAGGACGCGGCCTCGATG
GGCTCAGAACTTCCTTCGGAAGAAGGACGACAGAATATCCAAGAGCAGGC
TTCGTCGAATCTAGCGCGTGAGCTGGAGGCAGCCTCGCCCTTTTTGGTGA
ATTAGTACAATGACCGAAGAGTATTTGTTAATTGTTGAGCAGAGTAAAGC
AATGGAGTAAGATCAATGACGATGAAATGAAATAAGTCGAATCGCTGATT
G

Coding sequence (CDS) from alignment at scaffold_4:389441..392291-

>mRNA_1935 ID=mRNA_1935|Name=jgi.p|Nanoce1779_2|668692|organism=Nannochloropsis oceanica|type=CDS|length=2685bp|location=Sequence derived from alignment at scaffold_4:389441..392291- (Nannochloropsis oceanica)
ATGATGGAGCCATCATCATCGCCGGCGACAAGTCCCTCGACTCCTTCAAC
GCCCCTATTCACCATGGCCAAGGAGGACTTGCCGGCCCTCTTTTCCCAAA
TGGAGGACGCCGTTGCCGCCCTGGAGCCCTCACCACCTAACTCTCCCGGT
GTGGTACACAATCACCGGGACCATCATGACAGTGACGACGACATGGAACA
GGAAGAAGAGCGTTTGCACGATAGCAGTGAGAAGCTTCGGAGCCTCATGA
TGATGCGCCGAGGTGCGGGACAGCGCTACGACGAGTATCAGGCAAAGTCA
TCGTCATTGGATCCAAATGCAAATGTGCCACGCCAGTTGATTTTTGATGC
AGTCGGTGCCACTTCTTCGTCATTGTGCCCTACATCCGCCCTTGACATCG
ACGTCTCTTCATCCTCGTCACCCCCCTCCTGTCCTTCCTCCTTGCACGGG
TACTCCACACCCCTTCGCTGCGCTCCGACCACCGATCCATCGTCATCCTT
GTCGGCTTCTTATAATGGTACAACTTCTACCTCGTCTTCGACTCCGGCTC
AACTGCAATATTGGGACTGTACTGACCATCAAAGGGAGGGCACGCCAATG
TCGCCAACCCGCACAGCGGGCTTTGCGACGCCACTTGCCTTGAAAACGCC
TGAACAAGAATCAATAATTGCGAGGAATGACGAGAAGGTGGAAAACTTGT
GCCTGCGTCGAGTGCCCTCTGCCTTTCCGCTGCCATCCGCAGGCGAGGAG
GATTTGGAGGTTCTTGGTGATGTTGCCGTGGATCGGAGAGCAGGGGGTGA
CGACAACGAAAACAGCACGGACATCATAAGGATTCAGGCGTCTAGTAGCA
TTGCCAGCAGTCTTGCTTCTATTATTAGCTGTCTCCCACCCGCGTCGAGC
ACCAGAGAACGAAGTGTTTGGGGCGAGGAGGACAAGGACATGCATGAGGT
AGGATGTGCCTCTAGGTGCCTGAGTGAGCTGTCGATCCAGCAGCGATTCT
TCGGTCTGAGGGATGTGGCTTCAGGTGAAAAATGCAACGATAAATCGTCT
TTCTCTGTCTCCAAGCATGTCATGGTTACATCGGCTTGGTGTCGGCACTT
GGCCTTCATTGCCCTACGGCCTGACGTTCCATGTGGCGACATAAGCGATC
TGGTCACTGAGGTGCTAAGGGAGCAGGGACTCATAGTCCGAAAGCGCCAA
GGTTCCCATATTGTGGGAGGGATGAAAGTGGTAGACAAGGAAGGACAGGA
AAAAGGTGGCATCTGTGGGAATGGAATTCAAGCGGAGTGGAGCTTTGTGG
ACATTCAGGTGGCATTGGATCGACAAGACAGGGAGCGCGTTTTACTTGTG
CGTTTCATTATTTCCACCGAGACGGAGGAGGGGGGCTATAACACCGATTG
TAAGAAGATCATGACACCGTCAATGGGGAGAAGATCGTCGGTAGCAGGTG
TGGAAGGAGGGAGTGATGAACAGGGAACTTTGTTGGAAGCGCTCAAGGCC
AAGCTGTTCGGCTCGGGTCTCAATAAAAGAGCACTGCTGCGGGATGTGGA
TGCTAATGTGAGCAGCAGTAGCAGCAGCAAATCTAGCAAGAGCATAACGC
TCGACCCTCAATACCTTCATCAGCTTGAAGACCTTGCTCGCGAAGATATG
CACAGGACTTTGGAAGCGACAGCACGAAATCTGGAGGAGTACGTATGCGC
CGCTGAAGAGAAATGCGAGCAACTCAGGTTATTGATGGAGCCCATGTATT
TGCAGTATAAGCTTGAGAAAGCCCCGTCAATCGCTAAGGCTTTGCCTTTG
TCATTCTACCCGCTAGACTTGCTTGCGGCTGATGGGACTATGGGAGGAGA
TGAGCAGATCAGCCTGGAGGAAAAAACACTTGTTGATGATCGGTTGGCAT
ACATCGATGCGTTAAAGGAGACGGCCTGGCGATGTTGCTTGATGCAATGT
GACGCTGAAATGACGGCACGCATGCAAAGGAAGAATTTGCAGGTCCTGGA
TCGTATGGCGAAGTGCACTGAATACCAGAGATTGCTAATTGCGAACTTGC
GCGATAATGAACGCAGGACATCTGTGCCGCTATTTCAAGCTTTTAAGAAT
CAGATTGGCCATGATGGTGGGATTTATGACGATGAGGATGTGGAGACGCC
CTTGTATTATTGTCGCTGCATAATTGGGAGCCGCCCCGCAACACTGTTCA
TGACTTACGAGCACTTAGCCTTTGTGAGCAATGTGCCTGGATTTGGGTGG
TCGCGTCAGATTCGCTATGATGAGATTTCAACGTGTGGATTGGCATCTCT
TCGGATTGGTATTACGCTGGCCAAAGCCATTGCAATCCGAGCTCCGACGG
CCAGAGTTGCTTCGCCCATGCCCGTAAAGAGGCCTGGTGGTGCCAGTGGC
AAGGCAGCCCCCCGCAGCAGCTGTAGTAGAAGTATTAGAACTAGTGCTGC
CGTTGCATCTAGAAAAGCCGAGGAGGAGTCGCTCGTCTTCAGCACCATGA
TCGAACCTGAGCGTTTGCTGGACCTCATTAAGTTGTTAATTACTCTCAAT
GACGGAAATATCAAGGACGCGGCCTCGATGGGCTCAGAACTTCCTTCGGA
AGAAGGACGACAGAATATCCAAGAGCAGGCTTCGTCGAATCTAGCGCGTG
AGCTGGAGGCAGCCTCGCCCTTTTTGGTGAATTAG

Synonyms

Publications