jgi.p|Nanoce1779_2|578453, mRNA_1934 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578453
Unique Name	mRNA_1934
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2355
Alignment location	scaffold_4:387105..389459 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578539
Track	FilteredModels2
ProteinId	578453

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:387105..389459 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578453	gene_1934	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578453	mRNA_1934-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1934	CDS_1934	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:387105..389459+
coding sequence from alignment at scaffold_4:387105..389459+

mRNA sequence

>mRNA_1934 ID=mRNA_1934|Name=jgi.p|Nanoce1779_2|578453|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp
GGAGGAGGAGGAGGAGGAGGAGCAGCAGCAAAAGCAATAGCGCTTCATCT
CCGCACACAACCACACACAAACATATACGCATATATCACAGCTTTACAAC
TCCCGCTTCCACGACGTACATCACTCGCGCACACATGCCAACTATGGTTT
TCCTTTCCCATTCATGGACCTGCTGCATGATACGTACCATGGCGAGTTCA
GGGGGAAGGAGTATGTGGCAGGCTCACGACGAGGACGAGGACGAGGACGA
GGACTTGGAGAAGGAAACGAGAAGGAAGAGAGGAGAGGGGAAAAGGGGCA
ATAGGATGATATTGTAGTGAATGAGGGGCGTGAATAGGAGAAGTACAGGA
AGGCTACGAGGTCTCGGGCGTTAATGGGTCCAGAAGATCGAGAGTAGCAG
CAGTAGCAGCAGTAGCAGGAGTAGCAGCAGCAGCTGCTGCTGCAAGAGCA
CCTGTGCAGTTACCGATAGGACACATACGTGTAGAAAAAAAGCGGATGAT
CAACTCTTGTTTCCCAGGCTGGGAAGCGATGCACGCCAAGGCCGATTGCG
CATTTTGCGGGCGGATGCACTTCCGTTCTCGACCTCTCTCAGTTTCTGCG
AGCCATATGCACAGAGGTCGAAAGATGTTGACAAGGCAAACGGAATGACG
ATGGTAGAAAAACGAAAATATCTAGAAGACAGATACAGAGTAGCTGAAAA
GATAATTGTAAAGAGCCATGTGTTTTTTAGTGAATGTTTAAGAAAAAAGT
TGAAAAGTAAAGTGAAGAATGGAAACTAACATATAATTCCTTTTCCAACT
CCAGCCCCCATCCCCCGAGCAGACAGCTTGCCGGAGTGTCGGAGGGCACA
CGCATGGCAGGTCCTCCATCTCCACCAATAGAGCAAGTGGCAGCAGTGAC
GTCAAATGTCACCCATCCTGGGCCTTCTGCCATGCACAGCCACCTCCACC
TTCAGGACCACCGCCATCAACAACAAGACCCGCCCGCTGCCGCAACGGTC
AATATCAATCATGGCCAGCACCAGTCCTCAGAGCAGGAGCAAGAGCTACA
GCACCAAGGCAGCGACGGTCATCCTCGGCTAATCAAAATTGTTCTCACGG
GCGGGCCCTGCGGAGGGAAAACTACGGCACTCGCGCGCTTGTCGGAATTC
TTTCGCACCCACGGCTTTCGTGTCTTTACAGTCCCAGAGGCTGCTACTAT
GCTTTGGTCGAATGGCGTTGCCTTGTCAGATGTCCTGGCCTCGGAAGAAA
CTCAGTATTGGTTTCAAGACACCGTGTTGGAGTTCCAGATGCATTTGGAG
AATGGGGTAGAGAAGATTGCGCGGTCCTTGAACAAGCCGGCAGTAATACT
GTGTGATCGCGGCACATTGGACGGGGCAGCGTATGTGACTAAGGACATGT
GGGAGACCTTGTTGAAGAGAAAAGGGCTTGAACTTTTGTCGATTCGGGAG
GGGAGGTATGATGCGGTATTTCATTTGGTTACGGCTGCGACGGGTGCGGA
GCTTTATTATTCGCTTATGAACAATGAGACTCGAACGGAGTCGCCCGAAT
TTGCGCGCGAAGTGGATTTGAAGACGCAAGGCGTGTGGAATGGGCATCCG
AAGCATTTTGTGATTGACAACTCTACGGACTTTGAAGGGAAGTTGGCGCG
AGTGCAGAACCAAGCTGCTCGGCTTGTAGGCTTGCCGCAATTGCCCCGTG
GCGCAGATCGTTGGTACCTGCGCCGGCCACATGACCCAGCATGCTTCACA
GTGCCGTACGAGAAGACGCAAGTCCGCAAGGTGTATTTGGTCAATGTAGG
GAAGGCTTTGCCGGATGGGAGGAATGTAAGCGTTGAGTACAACTATGTTG
AAGAGAGGTCGCAAGATGGTTCGGTAGCCTACGCACACACGAGCAAGCAG
CGCCTGGACGATGGATATGAGGCCGAGTTGAAGCGCATCATCGATGAGCG
GGAGTTTCACTTCCGTGCCACGACTATGGCGGACCCGTCGCGAAAGGAAG
TGTTTCAAACGCGTTACTCCTTCTTGTGGGCGCAGCAGGCTTTTGTGGTC
ATTGATCACCATTCGGACAAACAGGAGTTTGGTCATGATCTATTTACGCT
TCGGCGGCAGGCTGAGGGAGGCACGCCGGAGTTCCCGCCTTTTTTGGATG
TGGGAGAGCACATTGAGGATGAAGACGGGCTATTCCCTTTTCCAACGCGC
CCGGCACCGTCACCCGTGAAGAAGGAGACAGTAGTCTAGGTAGAATTGGA
AATGCTAGTATTGGAAAATGAGGATGAAACGCAGGCCCACAAATGTGGTG
GGCCGTGGCTGGCACGTATGCCCATAGAAATACAAGCAATCAGCGATTCG
ACTTA

protein sequence of jgi.p|Nanoce1779_2|578453

>mRNA_1934-protein ID=mRNA_1934-protein|Name=jgi.p|Nanoce1779_2|578453|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MAGPPSPPIEQVAAVTSNVTHPGPSAMHSHLHLQDHRHQQQDPPAAATVN
INHGQHQSSEQEQELQHQGSDGHPRLIKIVLTGGPCGGKTTALARLSEFF
RTHGFRVFTVPEAATMLWSNGVALSDVLASEETQYWFQDTVLEFQMHLEN
GVEKIARSLNKPAVILCDRGTLDGAAYVTKDMWETLLKRKGLELLSIREG
RYDAVFHLVTAATGAELYYSLMNNETRTESPEFAREVDLKTQGVWNGHPK
HFVIDNSTDFEGKLARVQNQAARLVGLPQLPRGADRWYLRRPHDPACFTV
PYEKTQVRKVYLVNVGKALPDGRNVSVEYNYVEERSQDGSVAYAHTSKQR
LDDGYEAELKRIIDEREFHFRATTMADPSRKEVFQTRYSFLWAQQAFVVI
DHHSDKQEFGHDLFTLRRQAEGGTPEFPPFLDVGEHIEDEDGLFPFPTRP
APSPVKKETVV*

mRNA from alignment at scaffold_4:387105..389459+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1934 ID=mRNA_1934|Name=jgi.p|Nanoce1779_2|578453|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp|location=Sequence derived from alignment at scaffold_4:387105..389459+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGCAGCAGCAAAAGCAATAGCGCTTCATCT
CCGCACACAACCACACACAAACATATACGCATATATCACAGCTTTACAAC
TCCCGCTTCCACGACGTACATCACTCGCGCACACATGCCAACTATGGTTT
TCCTTTCCCATTCATGGACCTGCTGCATGATACGTACCATGGCGAGTTCA
GGGGGAAGGAGTATGTGGCAGGCTCACGACGAGGACGAGGACGAGGACGA
GGACTTGGAGAAGGAAACGAGAAGGAAGAGAGGAGAGGGGAAAAGGGGCA
ATAGGATGATATTGTAGTGAATGAGGGGCGTGAATAGGAGAAGTACAGGA
AGGCTACGAGGTCTCGGGCGTTAATGGGTCCAGAAGATCGAGAGTAGCAG
CAGTAGCAGCAGTAGCAGGAGTAGCAGCAGCAGCTGCTGCTGCAAGAGCA
CCTGTGCAGTTACCGATAGGACACATACGTGTAGAAAAAAAGCGGATGAT
CAACTCTTGTTTCCCAGGCTGGGAAGCGATGCACGCCAAGGCCGATTGCG
CATTTTGCGGGCGGATGCACTTCCGTTCTCGACCTCTCTCAGTTTCTGCG
AGCCATATGCACAGAGGTCGAAAGATGTTGACAAGGCAAACGGAATGACG
ATGGTAGAAAAACGAAAATATCTAGAAGACAGATACAGAGTAGCTGAAAA
GATAATTGTAAAGAGCCATGTGTTTTTTAGTGAATGTTTAAGAAAAAAGT
TGAAAAGTAAAGTGAAGAATGGAAACTAACATATAATTCCTTTTCCAACT
CCAGCCCCCATCCCCCGAGCAGACAGCTTGCCGGAGTGTCGGAGGGCACA
CGCATGGCAGGTCCTCCATCTCCACCAATAGAGCAAGTGGCAGCAGTGAC
GTCAAATGTCACCCATCCTGGGCCTTCTGCCATGCACAGCCACCTCCACC
TTCAGGACCACCGCCATCAACAACAAGACCCGCCCGCTGCCGCAACGGTC
AATATCAATCATGGCCAGCACCAGTCCTCAGAGCAGGAGCAAGAGCTACA
GCACCAAGGCAGCGACGGTCATCCTCGGCTAATCAAAATTGTTCTCACGG
GCGGGCCCTGCGGAGGGAAAACTACGGCACTCGCGCGCTTGTCGGAATTC
TTTCGCACCCACGGCTTTCGTGTCTTTACAGTCCCAGAGGCTGCTACTAT
GCTTTGGTCGAATGGCGTTGCCTTGTCAGATGTCCTGGCCTCGGAAGAAA
CTCAGTATTGGTTTCAAGACACCGTGTTGGAGTTCCAGATGCATTTGGAG
AATGGGGTAGAGAAGATTGCGCGGTCCTTGAACAAGCCGGCAGTAATACT
GTGTGATCGCGGCACATTGGACGGGGCAGCGTATGTGACTAAGGACATGT
GGGAGACCTTGTTGAAGAGAAAAGGGCTTGAACTTTTGTCGATTCGGGAG
GGGAGGTATGATGCGGTATTTCATTTGGTTACGGCTGCGACGGGTGCGGA
GCTTTATTATTCGCTTATGAACAATGAGACTCGAACGGAGTCGCCCGAAT
TTGCGCGCGAAGTGGATTTGAAGACGCAAGGCGTGTGGAATGGGCATCCG
AAGCATTTTGTGATTGACAACTCTACGGACTTTGAAGGGAAGTTGGCGCG
AGTGCAGAACCAAGCTGCTCGGCTTGTAGGCTTGCCGCAATTGCCCCGTG
GCGCAGATCGTTGGTACCTGCGCCGGCCACATGACCCAGCATGCTTCACA
GTGCCGTACGAGAAGACGCAAGTCCGCAAGGTGTATTTGGTCAATGTAGG
GAAGGCTTTGCCGGATGGGAGGAATGTAAGCGTTGAGTACAACTATGTTG
AAGAGAGGTCGCAAGATGGTTCGGTAGCCTACGCACACACGAGCAAGCAG
CGCCTGGACGATGGATATGAGGCCGAGTTGAAGCGCATCATCGATGAGCG
GGAGTTTCACTTCCGTGCCACGACTATGGCGGACCCGTCGCGAAAGGAAG
TGTTTCAAACGCGTTACTCCTTCTTGTGGGCGCAGCAGGCTTTTGTGGTC
ATTGATCACCATTCGGACAAACAGGAGTTTGGTCATGATCTATTTACGCT
TCGGCGGCAGGCTGAGGGAGGCACGCCGGAGTTCCCGCCTTTTTTGGATG
TGGGAGAGCACATTGAGGATGAAGACGGGCTATTCCCTTTTCCAACGCGC
CCGGCACCGTCACCCGTGAAGAAGGAGACAGTAGTCTAGGTAGAATTGGA
AATGCTAGTATTGGAAAATGAGGATGAAACGCAGGCCCACAAATGTGGTG
GGCCGTGGCTGGCACGTATGCCCATAGAAATACAAGCAATCAGCGATTCG
ACTTA

Coding sequence (CDS) from alignment at scaffold_4:387105..389459+

>mRNA_1934 ID=mRNA_1934|Name=jgi.p|Nanoce1779_2|578453|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_4:387105..389459+ (Nannochloropsis oceanica)
ATGGCAGGTCCTCCATCTCCACCAATAGAGCAAGTGGCAGCAGTGACGTC
AAATGTCACCCATCCTGGGCCTTCTGCCATGCACAGCCACCTCCACCTTC
AGGACCACCGCCATCAACAACAAGACCCGCCCGCTGCCGCAACGGTCAAT
ATCAATCATGGCCAGCACCAGTCCTCAGAGCAGGAGCAAGAGCTACAGCA
CCAAGGCAGCGACGGTCATCCTCGGCTAATCAAAATTGTTCTCACGGGCG
GGCCCTGCGGAGGGAAAACTACGGCACTCGCGCGCTTGTCGGAATTCTTT
CGCACCCACGGCTTTCGTGTCTTTACAGTCCCAGAGGCTGCTACTATGCT
TTGGTCGAATGGCGTTGCCTTGTCAGATGTCCTGGCCTCGGAAGAAACTC
AGTATTGGTTTCAAGACACCGTGTTGGAGTTCCAGATGCATTTGGAGAAT
GGGGTAGAGAAGATTGCGCGGTCCTTGAACAAGCCGGCAGTAATACTGTG
TGATCGCGGCACATTGGACGGGGCAGCGTATGTGACTAAGGACATGTGGG
AGACCTTGTTGAAGAGAAAAGGGCTTGAACTTTTGTCGATTCGGGAGGGG
AGGTATGATGCGGTATTTCATTTGGTTACGGCTGCGACGGGTGCGGAGCT
TTATTATTCGCTTATGAACAATGAGACTCGAACGGAGTCGCCCGAATTTG
CGCGCGAAGTGGATTTGAAGACGCAAGGCGTGTGGAATGGGCATCCGAAG
CATTTTGTGATTGACAACTCTACGGACTTTGAAGGGAAGTTGGCGCGAGT
GCAGAACCAAGCTGCTCGGCTTGTAGGCTTGCCGCAATTGCCCCGTGGCG
CAGATCGTTGGTACCTGCGCCGGCCACATGACCCAGCATGCTTCACAGTG
CCGTACGAGAAGACGCAAGTCCGCAAGGTGTATTTGGTCAATGTAGGGAA
GGCTTTGCCGGATGGGAGGAATGTAAGCGTTGAGTACAACTATGTTGAAG
AGAGGTCGCAAGATGGTTCGGTAGCCTACGCACACACGAGCAAGCAGCGC
CTGGACGATGGATATGAGGCCGAGTTGAAGCGCATCATCGATGAGCGGGA
GTTTCACTTCCGTGCCACGACTATGGCGGACCCGTCGCGAAAGGAAGTGT
TTCAAACGCGTTACTCCTTCTTGTGGGCGCAGCAGGCTTTTGTGGTCATT
GATCACCATTCGGACAAACAGGAGTTTGGTCATGATCTATTTACGCTTCG
GCGGCAGGCTGAGGGAGGCACGCCGGAGTTCCCGCCTTTTTTGGATGTGG
GAGAGCACATTGAGGATGAAGACGGGCTATTCCCTTTTCCAACGCGCCCG
GCACCGTCACCCGTGAAGAAGGAGACAGTAGTCTAG

Synonyms

Publications