jgi.p|Nanoce1779_2|578434, mRNA_1928 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578434
Unique Name	mRNA_1928
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2221
Alignment location	scaffold_4:372103..374574 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578520
Track	FilteredModels2
ProteinId	578434

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:372103..374574 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578434	gene_1928	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578434	mRNA_1928-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1928	CDS_1928	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:372103..374574+
coding sequence from alignment at scaffold_4:372103..374574+

mRNA sequence

>mRNA_1928 ID=mRNA_1928|Name=jgi.p|Nanoce1779_2|578434|organism=Nannochloropsis oceanica|type=mRNA|length=2221bp
ACAGGTATTCCACGCTGCACCCATTCCCAAAAAGCAGGGGAAAGGTCTAT
TGACGTTGAGCATGGCCGTTTTGGCGTCATCCCCCATCTTTTTGGCCCCG
CTGGCATTTCTCTTCGTCTTAGTTTGCAGCCTGATTTCCCCGACGAAATG
CGCGGAGCTCGTGCCCGACCGATGGCATGAGTTTGAGGTGCCCGTTGTGC
CCGAGGACAAGGTAATGTTCAAAATACAAAAAAGGATTAAGCAGAGTGAC
AAGATGGGGAGCGTGAGGCAAGGGTGGAGATTTGAGTGGCCTAGGAAGAA
TATGATTGAGCATGTGGTCCAATGGGCCGGCAAAAGAGAGTGCGCATGGT
GACGGCCCTCTGCTACTCATATCCTCCTCTTTGCAGTTTTTTTCGAACTT
CTTTCTTCGTACTATCTACATACCAATCAATTACCTCCTCCCCTACCGCA
TCTCTTATCCCCTAACAATTTCGAAGGATTACACTCAAATCAAGCTCAAC
CGTATAAGGGACGGCCACGTCGCCGTTAATAAGCATACCGACCCCTCCGT
CACGGCCGAGCTCTTGGTAGGGGACATGCTTGAAGCCAAAGGATACACTC
CCGAGGAGATCTACGCCATGCAAGGCGTGGTCTCTGTCCTCGTCAAAGCC
GGTGTTCTGACTGTGCATGCCGACAGGCTTGAGACCGCGGACCTCTCCGT
CTTGACGAAAACTACCAGCACAACAGGCACTCCCAAACGCCGCAAGCTCC
AAAACATGGATGGTTGTTGTCCGTGCCACGTGGAGGCCGGTCACCACCCC
CATCCTACCATCCCGCCCCACTACAACAAGAACCAAGGAGGAGGTAATGC
TGCCGCTCCTCCTAGCACCACCACCACCACTACTACTGCTCCAGCCGATG
CAGATGCCCGGGCCTGCGAACGTACGTTGGCCGGTTGCGCTATGAAAGAG
GTTCAACTCGCAGCCGATCGCCGATCGATGTACAAGACGATGAAAGCGTA
CGGGTTAGCCTTACGTCGGACAGCGGCAGCCCGTTCGTATTATCTGTATG
TGAAAGAAGAAGTTCACAGTTTCAATGAATTTGAAGCGCTGAGCAAAGCA
GAGCAAGAAGCGACGCGGGAGGAGCTAGCGGCCCACCTTCTTTTGACCTG
CAAAGCATACGGGCTCAATGGAGAAGAGCTCCAAAGGTATGGGAAAAAGC
TTGGGTTTGAAGTCCCTGACTTAACCAAGACCTCCGACGCAGAACTTACA
AGGCTTGCGACGGAGATGGCGTCTACACACATGATGGAGAGTGTGGCGAA
AGCGATGGGCAAAGATCTGGGGTTTGAAGCTTTGAAGGTCCTGAAGGACT
CTATGGGAGATGCGGCCTTGAGGAGAATTGGGGTGGAGCCCTCACCGGCG
TTACGCGTCGCGTTCGGGGAGTTTGCTAGTGAAGCTTCTCGATTCATAAC
CTTGTCGAGACAAGCGATGGAGGCACAGAACATGTTGGATCCTGAGATAG
ACGAAGCCTACACAAACGCCACGGCAATGGCGGATCGTCTGGCTGTGATG
ATGGAAAAGGTAAATGTGACCGATTTACTCGTCACGGCGACAGGCTTGAT
GATTTCGGCCGAGCCTTACCTGACAAGTGCAATCGACAATCCGGTGGATG
AGCAGATGAGGCATAAGACCATCCAACCCTGGGAGATTATTTTAAAATTG
AGTCAAGTGGAAAAGGCGGCGCAGCAGCAACGCAAGAGTTTCGCATTTGG
TCTTAAGGAGGGCAATGCGCTGGATGGGCTCGTTATGTTGCATAACGGAA
ACGGGGCCAGGGTGGAGAGCCCCTTGATGCAGCAGCTGGATTTTGACATG
ATTGAGGACATCACTGCAGATCACATGCTAGATGCATCCGAGCTGCGTTA
CCTCGTTCAGCGGGTAGGAGCCCTAAACGAAATCTATACCGTTGACGACT
TCGCGGATTTGATGGCCGAGGTGGAGGAGAATTACAGGGAGGTCAAGGGC
TTGCCACCTGTGTATGGACAAGAAGAGAGTTTCAAAGTGGGGCAGGCCAC
AGTGACGAAGGCCAGGGTGTAAACAACAGTTTGGAGTGGGTTCAAAAAAT
GAGAATTGCAATTGTGCGACATGAGAGGATAGAGAAAATAACGATGGAAT
TGGGACAGACCTAACATGACACTTAAAGTAGAAATGAAATAAAAGTAAAA
CCGTGTATGTGGATGGGAAGC

protein sequence of jgi.p|Nanoce1779_2|578434

>mRNA_1928-protein ID=mRNA_1928-protein|Name=jgi.p|Nanoce1779_2|578434|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MWSNGPAKESAHGDGPLLLISSSLQFFSNFFLRTIYIPINYLLPYRISYP
LTISKDYTQIKLNRIRDGHVAVNKHTDPSVTAELLVGDMLEAKGYTPEEI
YAMQGVVSVLVKAGVLTVHADRLETADLSVLTKTTSTTGTPKRRKLQNMD
GCCPCHVEAGHHPHPTIPPHYNKNQGGGNAAAPPSTTTTTTTAPADADAR
ACERTLAGCAMKEVQLAADRRSMYKTMKAYGLALRRTAAARSYYLYVKEE
VHSFNEFEALSKAEQEATREELAAHLLLTCKAYGLNGEELQRYGKKLGFE
VPDLTKTSDAELTRLATEMASTHMMESVAKAMGKDLGFEALKVLKDSMGD
AALRRIGVEPSPALRVAFGEFASEASRFITLSRQAMEAQNMLDPEIDEAY
TNATAMADRLAVMMEKVNVTDLLVTATGLMISAEPYLTSAIDNPVDEQMR
HKTIQPWEIILKLSQVEKAAQQQRKSFAFGLKEGNALDGLVMLHNGNGAR
VESPLMQQLDFDMIEDITADHMLDASELRYLVQRVGALNEIYTVDDFADL
MAEVEENYREVKGLPPVYGQEESFKVGQATVTKARV*

mRNA from alignment at scaffold_4:372103..374574+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1928 ID=mRNA_1928|Name=jgi.p|Nanoce1779_2|578434|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp|location=Sequence derived from alignment at scaffold_4:372103..374574+ (Nannochloropsis oceanica)
ACAGGTATTCCACGCTGCACCCATTCCCAAAAAGCAGGGGAAAGGTCTAT
TGACGTTGAGCATGGCCGTTTTGGCGTCATCCCCCATCTTTTTGGCCCCG
CTGGCATTTCTCTTCGTCTTAGTTTGCAGCCTGATTTCCCCGACGAAATG
CGCGGAGCTCGTGCCCGACCGATGGCATGAGTTTGAGGTGCCCGTTGTGC
CCGAGGACAAGGTAATGTTCAAAATACAAAAAAGGATTAAGCAGAGTGAC
AAGATGGGGAGCGTGAGGCAAGGGTGGAGATTTGAGTGGCCTAGGAAGAA
TATGATTGAGCATGTGGTCCAATGGGCCGGCAAAAGAGAGTGCGCATGGT
GACGGCCCTCTGCTACTCATATCCTCCTCTTTGCAGTTTTTTTCGAACTT
CTTTCTTCGTACTATCTACATACCAATCAATTACCTCCTCCCCTACCGCA
TCTCTTATCCCCTAACAATTTCGAAGGATTACACTCAAATCAAGCTCAAC
CGTATAAGGGACGGCCACGTCGCCGTTAATAAGCATACCGACCCCTCCGT
CACGGCCGAGCTCTTGGTAGGGGACATGCTTGAAGCCAAAGGATACACTC
CCGAGGAGATCTACGCCATGCAAGGCGTGGTCTCTGTCCTCGTCAAAGCC
GGTGTTCTGACTGTGCATGCCGACAGGCTTGAGACCGCGGACCTCTCCGT
CTTGACGAAAACTACCAGCACAACAGGCACTCCCAAACGCCGCAAGCTCC
AAAACATGGATGGTTGTTGTCCGTGCCACGTGGAGGCCGGTCACCACCCC
CATCCTACCATCCCGCCCCACTACAACAAGAACCAAGGAGGAGGTAATGC
TGCCGCTCCTCCTAGCACCACCACCACCACTACTACTGCTCCAGCCGATG
CAGATGCCCGGGCCTGCGAACGTACGTTGGCCGGTTGCGCTATGAAAGAG
GTTCAACTCGCAGCCGATCGCCGATCGATGTACAAGACGATGAAAGCGTA
CGGGTTAGCCTTACGTCGGACAGCGGCAGCCCGTTCGTATTATCTGTATG
TGAAAGAAGAAGTTCACAGTTTCAATGAATTTGAAGCGCTGAGCAAAGCA
GAGCAAGAAGCGACGCGGGAGGAGCTAGCGGCCCACCTTCTTTTGACCTG
CAAAGCATACGGGCTCAATGGAGAAGAGCTCCAAAGGTATGGGAAAAAGC
TTGGGTTTGAAGTCCCTGACTTAACCAAGACCTCCGACGCAGAACTTACA
AGGCTTGCGACGGAGATGGCGTCTACACACATGATGGAGAGTGTGGCGAA
AGCGATGGGCAAAGATCTGGGGTTTGAAGCTTTGAAGGTCCTGAAGGACT
CTATGGGAGATGCGGCCTTGAGGAGAATTGGGGTGGAGCCCTCACCGGCG
TTACGCGTCGCGTTCGGGGAGTTTGCTAGTGAAGCTTCTCGATTCATAAC
CTTGTCGAGACAAGCGATGGAGGCACAGAACATGTTGGATCCTGAGATAG
ACGAAGCCTACACAAACGCCACGGCAATGGCGGATCGTCTGGCTGTGATG
ATGGAAAAGGTAAATGTGACCGATTTACTCGTCACGGCGACAGGCTTGAT
GATTTCGGCCGAGCCTTACCTGACAAGTGCAATCGACAATCCGGTGGATG
AGCAGATGAGGCATAAGACCATCCAACCCTGGGAGATTATTTTAAAATTG
AGTCAAGTGGAAAAGGCGGCGCAGCAGCAACGCAAGAGTTTCGCATTTGG
TCTTAAGGAGGGCAATGCGCTGGATGGGCTCGTTATGTTGCATAACGGAA
ACGGGGCCAGGGTGGAGAGCCCCTTGATGCAGCAGCTGGATTTTGACATG
ATTGAGGACATCACTGCAGGTGAGTGGTACCGGGGGTAAAAGAAGAGGGA
GGGGCTGGTCGGAGGGAAGGGGAAGGAAAAGTGTGGGGGGGTGGGGGGGA
ACGATGGGTGGTTGATTTTGGACTGGGTGTATTGGATAGGACATACTCCG
GGTTCATTATATCTCATGCTTGTACATCATCTTTACAATTTGGAACGTCT
ATGTCTCATGTCGTGGTGAGCTTTTGAACGTCTCTGTCACTAACAGTCCA
TCTCTTCACCTTAAAAATAGATCACATGCTAGATGCATCCGAGCTGCGTT
ACCTCGTTCAGCGGGTAGGAGCCCTAAACGAAATCTATACCGTTGACGAC
TTCGCGGATTTGATGGCCGAGGTGGAGGAGAATTACAGGGAGGTCAAGGG
CTTGCCACCTGTGTATGGACAAGAAGAGAGTTTCAAAGTGGGGCAGGCCA
CAGTGACGAAGGCCAGGGTGTAAACAACAGTTTGGAGTGGGTTCAAAAAA
TGAGAATTGCAATTGTGCGACATGAGAGGATAGAGAAAATAACGATGGAA
TTGGGACAGACCTAACATGACACTTAAAGTAGAAATGAAATAAAAGTAAA
ACCGTGTATGTGGATGGGAAGC

Coding sequence (CDS) from alignment at scaffold_4:372103..374574+

>mRNA_1928 ID=mRNA_1928|Name=jgi.p|Nanoce1779_2|578434|organism=Nannochloropsis oceanica|type=CDS|length=3522bp|location=Sequence derived from alignment at scaffold_4:372103..374574+ (Nannochloropsis oceanica)
ATGTGGTCCAATGGGCCGGCAAAAGAGAGTGCGCATGGTGACGGCCCTCT
GCTACTCATATCCTCCTCTTTGCAGTTTTTTTCGAACTTCTTTCTTCGTA
CTATCTACATACCAATCAATTACCTCCTCCCCTACCGCATCTCTTATCCC
CTAACAATTTCGAAGGATTACACTCAAATCAAGCTCAACCGTATAAGGGA
CGGCCACGTCGCCGTTAATAAGCATACCGACCCCTCCGTCACGGCCGAGC
TCTTGGTAGGGGACATGCTTGAAGCCAAAGGATACACTCCCGAGGAGATC
TACGCCATGCAAGGCGTGGTCTCTGTCCTCGTCAAAGCCGGTGTTCTGAC
TGTGCATGCCGACAGGCTTGAGACCGCGGACCTCTCCGTCTTGACGAAAA
CTACCAGCACAACAGGCACTCCCAAACGCCGCAAGCTCCAAAACATGGAT
GGTTGTTGTCCGTGCCACGTGGAGGCCGGTCACCACCCCCATCCTACCAT
CCCGCCCCACTACAACAAGAACCAAGGAGGAGGTAATGCTGCCGCTCCTC
CTAGCACCACCACCACCACTACTACTGCTCCAGCCGATGCAGATGCCCGG
GCCTGCGAACGTACGTTGGCCGGTTGCGCTATGAAAGAGGTTCAACTCGC
AGCCGATCGCCGATCGATGTACAAGACGATGAAAGCGTACGGGTTAGCCT
TACGTCGGACAGCGGCAGCCCGTTCGTATTATCTGTATGTGAAAGAAGAA
GTTCACAGTTTCAATGAATTTGAAGCGCTGAGCAAAGCAGAGCAAGAAGC
GACGCGGGAGGAGCTAGCGGCCCACCTTCTTTTGACCTGCAAAGCATACG
GGCTCAATGGAGAAGAGCTCCAAAGGTATGGGAAAAAGCTTGGGTTTGAA
GTCCCTGACTTAACCAAGACCTCCGACGCAGAACTTACAAGGCTTGCGAC
GGAGATGGCGTCTACACACATGATGGAGAGTGTGGCGAAAGCGATGGGCA
AAGATCTGGGGTTTGAAGCTTTGAAGGTCCTGAAGGACTCTATGGGAGAT
GCGGCCTTGAGGAGAATTGGGGTGGAGCCCTCACCGGCGTTACGCGTCGC
GTTCGGGGAGTTTGCTAGTGAAGCTTCTCGATTCATAACCTTGTCGAGAC
AAGCGATGGAGGCACAGAACATGTTGGATCCTGAGATAGACGAAGCCTAC
ACAAACGCCACGGCAATGGCGGATCGTCTGGCTGTGATGATGGAAAAGGT
AAATGTGACCGATTTACTCGTCACGGCGACAGGCTTGATGATTTCGGCCG
AGCCTTACCTGACAAGTGCAATCGACAATCCGGTGGATGAGCAGATGAGG
CATAAGACCATCCAACCCTGGGAGATTATTTTAAAATTGAGTCAAGTGGA
AAAGGCGGCGCAGCAGCAACGCAAGAGTTTCGCATTTGGTCTTAAGGAGG
GCAATGCGCTGGATGGGCTCGTTATGTTGCATAACGGAAACGGGGCCAGG
GTGGAGAGCCCCTTGATGCAGCAGCTGGATTTTGACATGATTGAGGACAT
CACTGCAGATCACATGCTAGATGCATCCGAGCTGCGTTACCTCGTTCAGC
GGGTAGGAGCCCTAAACGAAATCTATACCGTTGACGACTTCGCGGATTTG
ATGGCCGAGGTGGAGGAGAATTACAGGGAGGTCAAGGGCTTGCCACCTGT
GTATGGACAAGAAGAGAGTTTCAAAGTGGGGCAGGCCACAGTGACGAAGG
CCAGGGTGTAAATGTGGTCCAATGGGCCGGCAAAAGAGAGTGCGCATGGT
GACGGCCCTCTGCTACTCATATCCTCCTCTTTGCAGTTTTTTTCGAACTT
CTTTCTTCGTACTATCTACATACCAATCAATTACCTCCTCCCCTACCGCA
TCTCTTATCCCCTAACAATTTCGAAGGATTACACTCAAATCAAGCTCAAC
CGTATAAGGGACGGCCACGTCGCCGTTAATAAGCATACCGACCCCTCCGT
CACGGCCGAGCTCTTGGTAGGGGACATGCTTGAAGCCAAAGGATACACTC
CCGAGGAGATCTACGCCATGCAAGGCGTGGTCTCTGTCCTCGTCAAAGCC
GGTGTTCTGACTGTGCATGCCGACAGGCTTGAGACCGCGGACCTCTCCGT
CTTGACGAAAACTACCAGCACAACAGGCACTCCCAAACGCCGCAAGCTCC
AAAACATGGATGGTTGTTGTCCGTGCCACGTGGAGGCCGGTCACCACCCC
CATCCTACCATCCCGCCCCACTACAACAAGAACCAAGGAGGAGGTAATGC
TGCCGCTCCTCCTAGCACCACCACCACCACTACTACTGCTCCAGCCGATG
CAGATGCCCGGGCCTGCGAACGTACGTTGGCCGGTTGCGCTATGAAAGAG
GTTCAACTCGCAGCCGATCGCCGATCGATGTACAAGACGATGAAAGCGTA
CGGGTTAGCCTTACGTCGGACAGCGGCAGCCCGTTCGTATTATCTGTATG
TGAAAGAAGAAGTTCACAGTTTCAATGAATTTGAAGCGCTGAGCAAAGCA
GAGCAAGAAGCGACGCGGGAGGAGCTAGCGGCCCACCTTCTTTTGACCTG
CAAAGCATACGGGCTCAATGGAGAAGAGCTCCAAAGGTATGGGAAAAAGC
TTGGGTTTGAAGTCCCTGACTTAACCAAGACCTCCGACGCAGAACTTACA
AGGCTTGCGACGGAGATGGCGTCTACACACATGATGGAGAGTGTGGCGAA
AGCGATGGGCAAAGATCTGGGGTTTGAAGCTTTGAAGGTCCTGAAGGACT
CTATGGGAGATGCGGCCTTGAGGAGAATTGGGGTGGAGCCCTCACCGGCG
TTACGCGTCGCGTTCGGGGAGTTTGCTAGTGAAGCTTCTCGATTCATAAC
CTTGTCGAGACAAGCGATGGAGGCACAGAACATGTTGGATCCTGAGATAG
ACGAAGCCTACACAAACGCCACGGCAATGGCGGATCGTCTGGCTGTGATG
ATGGAAAAGGTAAATGTGACCGATTTACTCGTCACGGCGACAGGCTTGAT
GATTTCGGCCGAGCCTTACCTGACAAGTGCAATCGACAATCCGGTGGATG
AGCAGATGAGGCATAAGACCATCCAACCCTGGGAGATTATTTTAAAATTG
AGTCAAGTGGAAAAGGCGGCGCAGCAGCAACGCAAGAGTTTCGCATTTGG
TCTTAAGGAGGGCAATGCGCTGGATGGGCTCGTTATGTTGCATAACGGAA
ACGGGGCCAGGGTGGAGAGCCCCTTGATGCAGCAGCTGGATTTTGACATG
ATTGAGGACATCACTGCAGATCACATGCTAGATGCATCCGAGCTGCGTTA
CCTCGTTCAGCGGGTAGGAGCCCTAAACGAAATCTATACCGTTGACGACT
TCGCGGATTTGATGGCCGAGGTGGAGGAGAATTACAGGGAGGTCAAGGGC
TTGCCACCTGTGTATGGACAAGAAGAGAGTTTCAAAGTGGGGCAGGCCAC
AGTGACGAAGGCCAGGGTGTAA

Synonyms

Publications