jgi.p|Nanoce1779_2|578432, mRNA_1927 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578432
Unique Name	mRNA_1927
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2590
Alignment location	scaffold_4:368997..371937 +

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Properties


Property Name	Value
TranscriptId	578518
Track	FilteredModels2
ProteinId	578432

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:368997..371937 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578432	gene_1927	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578432	mRNA_1927-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1927	CDS_1927	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:368997..371937+
coding sequence from alignment at scaffold_4:368997..371937+

mRNA sequence

>mRNA_1927 ID=mRNA_1927|Name=jgi.p|Nanoce1779_2|578432|organism=Nannochloropsis oceanica|type=mRNA|length=2590bp
CCGCAGTCCTCTTACAGCTGCTCCAAGCGTCATTTTTATCGTTGTTGTTG
TTGTTGTCGTTGCTGCTGCTGCTGCTGCTGCATCTCTTGCTCATGAATGC
TTCCTCCTTTTCCGGTTCACTCTTCCACTGAACAAACACCAGACCATTCG
TTACATCTCTCACGTGGGCCGTTTTCAAGGCCTCCTTGTACCTATGCACC
GCTGCATCCTGTGCTAGAGCTGTGGCAGTATCCTCCAGTCGATAATTATG
GATAAGAGCGGAGTACTCAGCCAGCGACCACTTTAATCCGTGAAAAGCCT
TGATGTATAATCTCTGTTGTTTCTGCTGCTGCTGCTGCTGCTCCTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTTCCCCCCATTCAAGCTCAACCC
ATCATTCCACCATCTCTCTACTCGCTCCGGGAGTGTATCGACATTAACCA
GATTCCCTACAAGGTATAGCCATCCCTCTTCCTCTCCCTTACTGTTCTTC
TGCGACAGCACTTGAGCTGCCAAGGCCACTACTGCTTGCGTTATCTCTTC
ACCCGTTGTCCCTCCATCCCCGTACTGATGCAAGTGTCGAGCACTTCGTT
CAGGGTTAGGGATGTAAGGGGGGTTGGACAAAACAATGTCATATGCAGGC
AAGGGTAAATCTGCAGGAGTGACAGTTCGGGCGTCATGTTGAAGCACTGT
GGTTTGTTCTTGGAGGTGATTAAGTGCAGCATTGAAAGTGGCGAAGCGGA
CGGCGCGTGGGTTAAGCTCTAGTAAGACCAGCTGTTCGAAAATGGAAACC
TTTTGTGGTTGCTGCTGCTGCTCTTTTTGTGATTGCTGCTCCTGCTGTTG
AGCTCTCAAAGCTGCCACTATCCCTTGCACTCCACACCCTGCACACAAAT
CCAAGATTCGTCGAGGCACAGACAGAAAAGACGAGGCAGATAAATCTGAT
CCACCCCCTCCCTCCTCCTCTTTGACCCCAGCAGTGGCAGTATACGAAGG
CATAGCCCCCACCAAGCCCAACGAATCAGGTCCAACATACATCACGGGAT
CGAACCCCACCACCCCACTCCCAACCTGAGAAAAATCCGTGAGAAAAAGT
CCACAACCATACCCTTGAGTGCCACCATTACCACTCCGAAATGGGACAGG
AGTAATTTGAACTAAACTCTTTACGGACACATCATTACTGCCATTGGTGG
TATCGTCGTTGCTGTTGTTGTCATGACCTTCCACGAAGAGCAACCCAAGG
TCTTCCAGCCGCTTTAGTAAGCCGTGGTCCTGTACGAACGTGAGCAAGTC
ACTGCAGGGTACAGCCATACCCATCAGAAAAAATTTGATAAGAAACACCA
AGGAAGAAGGAGAAGAGTCGGCAGCAGCAGCAGCAGCAGCGCTTGCTGGT
GCCGTTGAAGTCAAAGAGGAGGAGGAAATAGTATTGTTCTCTTCAGTCGT
CATGGATGTCGTCCTCATTTTAAGTGCCGCATCCAGGTGCTTCAGAAACT
CAGCACGCAGCCGCGGCTCGCTGATATCCCACACTGGCAGAAGCTTCCCG
TAAGTCGACTCCAACCCCAGCAGCGCGTTGATTTGACCAACATCACAGTA
CCCCTCCCCCTCCAAAATCAGCCGAAGACGGTGCGCCGTTTCAACCATCC
CTTCCTTCTCCCCTTCTTTGTCTTCCTGCATGGTACTGCTCGCAGCAGCA
TCCAATTTCATCAGCACCTGCAATCGAGCAAGGCGCGCAGCTTGGCCATG
AGGCAAGTTGTCACACGTCGCGATCTCACCCTCCGCAACCGCTCGACGGG
GCCAAAAGGCCGTAAAAGCCTCATTGGTAAGTGGGTGAAATACTAGCGCA
CATCGAAAACCCGCGCCTGTGCGTGCATTTATCAACTCTTCCTCATCGTC
CCCGCTTTGGGTCCCTTTTTTCTTCTCGAGTCCAAGATATCGTCGAGGAA
AGACATCACGAAATCTTAAACCCACTTCGTCCAGGATATACATGACGTCT
GTTGCCTGTCCCTTCCGATTCATATAATTATATCTTCCGACTAGTGGCCA
CATGCGTGCTGCGATGCTCTTCGCGTTGCTCTCCCCTTCTTTCCCCTCCT
CCATTTCAAGCAAATCCCGCAGACGCTCTTGGAGAGCTTCTCCCTCCTCG
AGCATAGCCTGGGCTTCCGCTGGTGTTGTCGTACCAGGAAAGCTCCAAAG
ATGATCGCACAAATATATTTCGCCTTCTTTATTGAGGGTACGCTGGGTGA
CGAGGCATGCGCGGTGGCCTGGGGGAGAGTCTTCGTCGTTGTTCAGGACA
AAGGCGTTGCCCGCGTCAAAAATCTGGTTTCGCAACTTTTCTTGCAAGAC
CGGCAGCAGTGTAGGGGGTATGCCTGCAGTCATCTCCTTATCGGCTGCCT
GTTGCCATTAGTGGGCAGTGATGGAGTGATTTCCGAGTGGGGCGTGCGAC
GCTGATGCCGATGGCCTTAATGCTTGAAGCAAGCTCCGAGTCTCAACGGC
TCCGGCGTCCGGAGTCTACATGTTTGCACGAAAACGCCATCGTTCGACCT
TCCCCTTGCCTTCACCACAAACAAAGCCGTCCGGTAGCCG

protein sequence of jgi.p|Nanoce1779_2|578432

>mRNA_1927-protein ID=mRNA_1927-protein|Name=jgi.p|Nanoce1779_2|578432|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MIAQIYFAFFIEGTLGDEACAVAWGRVFVVVQDKGVARVKNLVSQLFLQD
RQQCRGYACSHLLIGCLLPLVGSDGVISEWGVRR*

mRNA from alignment at scaffold_4:368997..371937+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1927 ID=mRNA_1927|Name=jgi.p|Nanoce1779_2|578432|organism=Nannochloropsis oceanica|type=mRNA|length=2941bp|location=Sequence derived from alignment at scaffold_4:368997..371937+ (Nannochloropsis oceanica)
CCGCAGTCCTCTTACAGCTGCTCCAAGCGTCATTTTTATCGTTGTTGTTG
TTGTTGTCGTTGCTGCTGCTGCTGCTGCTGCATCTCTTGCTCATGAATGC
TTCCTCCTTTTCCGGTTCACTCTTCCACTGAACAAACACCAGACCATTCG
TTACATCTCTCACGTGGGCCGTTTTCAAGGCCTCCTTGTACCTATGCACC
GCTGCATCCTGTGCTAGAGCTGTGGCAGTATCCTCCAGTCGATAATTATG
GATAAGAGCGGAGTACTCAGCCAGCGACCACTTTAATCCGTGAAAAGCCT
TGATGTATAATCTCTGTTGTTTCTGCTGCTGCTGCTGCTGCTCCTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTTCCCCCCATTCAAGCTCAACCC
ATCATTCCACCATCTCTCTACTCGCTCCGGGAGTGTATCGACATTAACCA
GATTCCCTACAAGGTATAGCCATCCCTCTTCCTCTCCCTTACTGTTCTTC
TGCGACAGCACTTGAGCTGCCAAGGCCACTACTGCTTGCGTTATCTCTTC
ACCCGTTGTCCCTCCATCCCCGTACTGATGCAAGTGTCGAGCACTTCGTT
CAGGGTTAGGGATGTAAGGGGGGTTGGACAAAACAATGTCATATGCAGGC
AAGGGTAAATCTGCAGGAGTGACAGTTCGGGCGTCATGTTGAAGCACTGT
GGTTTGTTCTTGGAGGTGATTAAGTGCAGCATTGAAAGTGGCGAAGCGGA
CGGCGCGTGGGTTAAGCTCTAGTAAGACCAGCTGTTCGAAAATGGAAACC
TTTTGTGGTTGCTGCTGCTGCTCTTTTTGTGATTGCTGCTCCTGCTGTTG
AGCTCTCAAAGCTGCCACTATCCCTTGCACTCCACACCCTGCACACAAAT
CCAAGATTCGTCGAGGCACAGACAGAAAAGACGAGGCAGATAAATCTGAT
CCACCCCCTCCCTCCTCCTCTTTGACCCCAGCAGTGGCAGTATACGAAGG
CATAGCCCCCACCAAGCCCAACGAATCAGGTCCAACATACATCACGGGAT
CGAACCCCACCACCCCACTCCCAACCTGAGAAAAATCCGTGAGAAAAAGT
CCACAACCATACCCTTGAGTGCCACCATTACCACTCCGAAATGGGACAGG
AGTAATTTGAACTAAACTCTTTACGGACACATCATTACTGCCATTGGTGG
TATCGTCGTTGCTGTTGTTGTCATGACCTTCCACGAAGAGCAACCCAAGG
TCTTCCAGCCGCTTTAGTAAGCCGTGGTCCTGTACGAACGTGAGCAAGTC
ACTGCAGGGTACAGCCATACCCATCAGAAAAAATTTGATAAGAAACACCA
AGGAAGAAGGAGAAGAGTCGGCAGCAGCAGCAGCAGCAGCGCTTGCTGGT
GCCGTTGAAGTCAAAGAGGAGGAGGAAATAGTATTGTTCTCTTCAGTCGT
CATGGATGTCGTCCTCATTTTAAGTGCCGCATCCAGGTGCTTCAGAAACT
CAGCACGCAGCCGCGGCTCGCTGATATCCCACACTGGCAGAAGCTTCCCG
TAAGTCGACTCCAACCCCAGCAGCGCGTTGATTTGACCAACATCACAGTA
CCCCTCCCCCTCCAAAATCAGCCGAAGACGGTGCGCCGTTTCAACCATCC
CTTCCTTCTCCCCTTCTTTGTCTTCCTGCATGGTACTGCTCGCAGCAGCA
TCCAATTTCATCAGCACCTGCAATCGAGCAAGGCGCGCAGCTTGGCCATG
AGGCAAGTTGTCACACGTCGCGATCTCACCCTCCGCAACCGCTCGACGGG
GCCAAAAGGCCGTAAAAGCCTCATTGGTAAGTGGGTGAAATACTAGCGCA
CATCGAAAACCCGCGCCTGTGCGTGCATTTATCAACTCTTCCTCATCGTC
CCCGCTTTGGGTCCCTTTTTTCTTCTCGAGTCCAAGATATCGTCGAGGAA
AGACATCACGAAATCTTAAACCCACTTCGTCCAGGATATACATGACGTCT
GTTGCCTGTCCCTTCCGATTCATATAATTATATCTTCCGACTAGTGGCCA
CATGCGTGCTGCGATGCTCTTCGCGTTGCTCTCCCCTTCTTTCCCCTCCT
CCATTTCAAGCAAATCCCGCAGACGCTCTTGGAGAGCTTCTCCCTCCTCG
AGCATAGCCTGGGCTTCCGCTGGTGTTGTCGTACCAGGAAAGCTCCAAAG
ATGATCGCACAAATATATTTCGCCTTCTTTATTGAGGGTACGCTGGGTGA
CGAGGCATGCGCGGTGGCCTGGGGGAGAGTCTTCGTCGTTGTTCAGGACA
AAGGCGTTGCCCGCGTCAAAAATCTATTTGAGGAAGGGGGCGTTGGGAGG
GGAAGATGAAGATTATTTCTCATACAGGGAGTAAGATAGCCCGCAAGATT
TCTAGAAATGAGCGGTAGTGTGCTTAAGAACGACGAAAGTGCGACTTAGG
GCTGGCATTCGAGGGGAGGAGGCTATGTGGGAGGAATAGATGAATGGGGG
TTTGCGCTTTAGAGGCACCCCTCAAAGCGGCAGCAAATACATCGACCACA
AGGTAGACACATGGTCAAATAAATAGAGAATTGCGCCAAAATAAGGATGG
AGGGAAGGGTGGGTAAGGAGGGATGGGTATGGTGTGTGGGGGAGGTCGAA
GGACATATCGGTCCCAAAACTTACCTGGTTTCGCAACTTTTCTTGCAAGA
CCGGCAGCAGTGTAGGGGGTATGCCTGCAGTCATCTCCTTATCGGCTGCC
TGTTGCCATTAGTGGGCAGTGATGGAGTGATTTCCGAGTGGGGCGTGCGA
CGCTGATGCCGATGGCCTTAATGCTTGAAGCAAGCTCCGAGTCTCAACGG
CTCCGGCGTCCGGAGTCTACATGTTTGCACGAAAACGCCATCGTTCGACC
TTCCCCTTGCCTTCACCACAAACAAAGCCGTCCGGTAGCCG

Coding sequence (CDS) from alignment at scaffold_4:368997..371937+

>mRNA_1927 ID=mRNA_1927|Name=jgi.p|Nanoce1779_2|578432|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_4:368997..371937+ (Nannochloropsis oceanica)
ATGATCGCACAAATATATTTCGCCTTCTTTATTGAGGGTACGCTGGGTGA
CGAGGCATGCGCGGTGGCCTGGGGGAGAGTCTTCGTCGTTGTTCAGGACA
AAGGCGTTGCCCGCGTCAAAAATCTGGTTTCGCAACTTTTCTTGCAAGAC
CGGCAGCAGTGTAGGGGGTATGCCTGCAGTCATCTCCTTATCGGCTGCCT
GTTGCCATTAGTGGGCAGTGATGGAGTGATTTCCGAGTGGGGCGTGCGAC
GCTGAATGATCGCACAAATATATTTCGCCTTCTTTATTGAGGGTACGCTG
GGTGACGAGGCATGCGCGGTGGCCTGGGGGAGAGTCTTCGTCGTTGTTCA
GGACAAAGGCGTTGCCCGCGTCAAAAATCTGGTTTCGCAACTTTTCTTGC
AAGACCGGCAGCAGTGTAGGGGGTATGCCTGCAGTCATCTCCTTATCGGC
TGCCTGTTGCCATTAGTGGGCAGTGATGGAGTGATTTCCGAGTGGGGCGT
GCGACGCTGA

Synonyms

Publications