jgi.p|Nanoce1779_2|288926, mRNA_1926 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|288926
Unique Name	mRNA_1926
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2513
Alignment location	scaffold_4:368821..371333 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	289012
Track	FilteredModels2
ProteinId	288926

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:368821..371333 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|288926	gene_1926	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|288926	mRNA_1926-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1926	CDS_1926	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:368821..371333-
coding sequence from alignment at scaffold_4:368821..371333-

mRNA sequence

>mRNA_1926 ID=mRNA_1926|Name=jgi.p|Nanoce1779_2|288926|organism=Nannochloropsis oceanica|type=mRNA|length=2513bp
CCTTCCTCAAATAGATTTTTGACGCGGGCAACGCCTTTGTCCTGAACAAC
GACGAAGACTCTCCCCCAGGCCACCGCGCATGCCTCGTCACCCAGCGTAC
CCTCAATAAAGAAGGCGAAATATATTTGTGCGATCATCTTTGGAGCTTTC
CTGGTACGACAACACCAGCGGAAGCCCAGGCTATGCTCGAGGAGGGAGAA
GCTCTCCAAGAGCGTCTGCGGGATTTGCTTGAAATGGAGGAGGGGAAAGA
AGGGGAGAGCAACGCGAAGAGCATCGCAGCACGCATGTGGCCACTAGTCG
GAAGATATAATTATATGAATCGGAAGGGACAGGCAACAGACGTCATGTAT
ATCCTGGACGAAGTGGGTTTAAGATTTCGTGATGTCTTTCCTCGACGATA
TCTTGGACTCGAGAAGAAAAAAGGGACCCAAAGCGGGGACGATGAGGAAG
AGTTGATAAATGCACGCACAGGCGCGGGTTTTCGATGTGCGCTAGTATTT
CACCCACTTACCAATGAGGCTTTTACGGCCTTTTGGCCCCGTCGAGCGGT
TGCGGAGGGTGAGATCGCGACGTGTGACAACTTGCCTCATGGCCAAGCTG
CGCGCCTTGCTCGATTGCAGGTGCTGATGAAATTGGATGCTGCTGCGAGC
AGTACCATGCAGGAAGACAAAGAAGGGGAGAAGGAAGGGATGGTTGAAAC
GGCGCACCGTCTTCGGCTGATTTTGGAGGGGGAGGGGTACTGTGATGTTG
GTCAAATCAACGCGCTGCTGGGGTTGGAGTCGACTTACGGGAAGCTTCTG
CCAGTGTGGGATATCAGCGAGCCGCGGCTGCGTGCTGAGTTTCTGAAGCA
CCTGGATGCGGCACTTAAAATGAGGACGACATCCATGACGACTGAAGAGA
ACAATACTATTTCCTCCTCCTCTTTGACTTCAACGGCACCAGCAAGCGCT
GCTGCTGCTGCTGCTGCCGACTCTTCTCCTTCTTCCTTGGTGTTTCTTAT
CAAATTTTTTCTGATGGGTATGGCTGTACCCTGCAGTGACTTGCTCACGT
TCGTACAGGACCACGGCTTACTAAAGCGGCTGGAAGACCTTGGGTTGCTC
TTCGTGGAAGGTCATGACAACAACAGCAACGACGATACCACCAATGGCAG
TAATGATGTGTCCGTAAAGAGTTTAGTTCAAATTACTCCTGTCCCATTTC
GGAGTGGTAATGGTGGCACTCAAGGGTATGGTTGTGGACTTTTTCTCACG
GATTTTTCTCAGGTTGGGAGTGGGGTGGTGGGGTTCGATCCCGTGATGTA
TGTTGGACCTGATTCGTTGGGCTTGGTGGGGGCTATGCCTTCGTATACTG
CCACTGCTGGGGTCAAAGAGGAGGAGGGAGGGGGTGGATCAGATTTATCT
GCCTCGTCTTTTCTGTCTGTGCCTCGACGAATCTTGGATTTGTGTGCAGG
GTGTGGAGTGCAAGGGATAGTGGCAGCTTTGAGAGCTCAACAGCAGGAGC
AGCAATCACAAAAAGAGCAGCAGCAGCAACCACAAAAGGTTTCCATTTTC
GAACAGCTGGTCTTACTAGAGCTTAACCCACGCGCCGTCCGCTTCGCCAC
TTTCAATGCTGCACTTAATCACCTCCAAGAACAAACCACAGTGCTTCAAC
ATGACGCCCGAACTGTCACTCCTGCAGATTTACCCTTGCCTGCATATGAC
ATTGTTTTGTCCAACCCCCCTTACATCCCTAACCCTGAACGAAGTGCTCG
ACACTTGCATCAGTACGGGGATGGAGGGACAACGGGTGAAGAGATAACGC
AAGCAGTAGTGGCCTTGGCAGCTCAAGTGCTGTCGCAGAAGAACAGTAAG
GGAGAGGAAGAGGGATGGCTATACCTTGTAGGGAATCTGGTTAATGTCGA
TACACTCCCGGAGCGAGTAGAGAGATGGTGGAATGATGGGTTGAGCTTGA
ATGGGGGGAAACAACAACAACAACAACAACAACAACAACAACAGGAGCAG
CAGCAGCAGCAGCAGAAACAACAGAGATTATACATCAAGGCTTTTCACGG
ATTAAAGTGGTCGCTGGCTGAGTACTCCGCTCTTATCCATAATTATCGAC
TGGAGGATACTGCCACAGCTCTAGCACAGGATGCAGCGGTGCATAGGTAC
AAGGAGGCCTTGAAAACGGCCCACGTGAGAGATGTAACGAATGGTCTGGT
GTTTGTTCAGTGGAAGAGTGAACCGGAAAAGGAGGAAGCATTCATGAGCA
AGAGATGCAGCAGCAGCAGCAGCAGCAACGACAACAACAACAACAACGAT
AAAAATGACGCTTGGAGCAGCTGTAAGAGGACTGCGGTCGCGCTGCATGC
GCAGCTCTGGCAGGTATTGGCCATGTATTACGACCCGGAAGCGAGCGATA
CGCGGAGGAAACTGGCAGAGGGTTGGATGTAAAATGATAAGACCCGACAC
AAAAGCAAGGGAGGAAATGACACAGTTCAAAGTATCTTGTCTTCTTGAAA
TCACTCTAAAGCC

protein sequence of jgi.p|Nanoce1779_2|288926

>mRNA_1926-protein ID=mRNA_1926-protein|Name=jgi.p|Nanoce1779_2|288926|organism=Nannochloropsis oceanica|type=polypeptide|length=750bp
MLEEGEALQERLRDLLEMEEGKEGESNAKSIAARMWPLVGRYNYMNRKGQ
ATDVMYILDEVGLRFRDVFPRRYLGLEKKKGTQSGDDEEELINARTGAGF
RCALVFHPLTNEAFTAFWPRRAVAEGEIATCDNLPHGQAARLARLQVLMK
LDAAASSTMQEDKEGEKEGMVETAHRLRLILEGEGYCDVGQINALLGLES
TYGKLLPVWDISEPRLRAEFLKHLDAALKMRTTSMTTEENNTISSSSLTS
TAPASAAAAAAADSSPSSLVFLIKFFLMGMAVPCSDLLTFVQDHGLLKRL
EDLGLLFVEGHDNNSNDDTTNGSNDVSVKSLVQITPVPFRSGNGGTQGYG
CGLFLTDFSQVGSGVVGFDPVMYVGPDSLGLVGAMPSYTATAGVKEEEGG
GGSDLSASSFLSVPRRILDLCAGCGVQGIVAALRAQQQEQQSQKEQQQQP
QKVSIFEQLVLLELNPRAVRFATFNAALNHLQEQTTVLQHDARTVTPADL
PLPAYDIVLSNPPYIPNPERSARHLHQYGDGGTTGEEITQAVVALAAQVL
SQKNSKGEEEGWLYLVGNLVNVDTLPERVERWWNDGLSLNGGKQQQQQQQ
QQQQEQQQQQQKQQRLYIKAFHGLKWSLAEYSALIHNYRLEDTATALAQD
AAVHRYKEALKTAHVRDVTNGLVFVQWKSEPEKEEAFMSKRCSSSSSSND
NNNNNDKNDAWSSCKRTAVALHAQLWQVLAMYYDPEASDTRRKLAEGWM*

mRNA from alignment at scaffold_4:368821..371333-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1926 ID=mRNA_1926|Name=jgi.p|Nanoce1779_2|288926|organism=Nannochloropsis oceanica|type=mRNA|length=2513bp|location=Sequence derived from alignment at scaffold_4:368821..371333- (Nannochloropsis oceanica)
CCTTCCTCAAATAGATTTTTGACGCGGGCAACGCCTTTGTCCTGAACAAC
GACGAAGACTCTCCCCCAGGCCACCGCGCATGCCTCGTCACCCAGCGTAC
CCTCAATAAAGAAGGCGAAATATATTTGTGCGATCATCTTTGGAGCTTTC
CTGGTACGACAACACCAGCGGAAGCCCAGGCTATGCTCGAGGAGGGAGAA
GCTCTCCAAGAGCGTCTGCGGGATTTGCTTGAAATGGAGGAGGGGAAAGA
AGGGGAGAGCAACGCGAAGAGCATCGCAGCACGCATGTGGCCACTAGTCG
GAAGATATAATTATATGAATCGGAAGGGACAGGCAACAGACGTCATGTAT
ATCCTGGACGAAGTGGGTTTAAGATTTCGTGATGTCTTTCCTCGACGATA
TCTTGGACTCGAGAAGAAAAAAGGGACCCAAAGCGGGGACGATGAGGAAG
AGTTGATAAATGCACGCACAGGCGCGGGTTTTCGATGTGCGCTAGTATTT
CACCCACTTACCAATGAGGCTTTTACGGCCTTTTGGCCCCGTCGAGCGGT
TGCGGAGGGTGAGATCGCGACGTGTGACAACTTGCCTCATGGCCAAGCTG
CGCGCCTTGCTCGATTGCAGGTGCTGATGAAATTGGATGCTGCTGCGAGC
AGTACCATGCAGGAAGACAAAGAAGGGGAGAAGGAAGGGATGGTTGAAAC
GGCGCACCGTCTTCGGCTGATTTTGGAGGGGGAGGGGTACTGTGATGTTG
GTCAAATCAACGCGCTGCTGGGGTTGGAGTCGACTTACGGGAAGCTTCTG
CCAGTGTGGGATATCAGCGAGCCGCGGCTGCGTGCTGAGTTTCTGAAGCA
CCTGGATGCGGCACTTAAAATGAGGACGACATCCATGACGACTGAAGAGA
ACAATACTATTTCCTCCTCCTCTTTGACTTCAACGGCACCAGCAAGCGCT
GCTGCTGCTGCTGCTGCCGACTCTTCTCCTTCTTCCTTGGTGTTTCTTAT
CAAATTTTTTCTGATGGGTATGGCTGTACCCTGCAGTGACTTGCTCACGT
TCGTACAGGACCACGGCTTACTAAAGCGGCTGGAAGACCTTGGGTTGCTC
TTCGTGGAAGGTCATGACAACAACAGCAACGACGATACCACCAATGGCAG
TAATGATGTGTCCGTAAAGAGTTTAGTTCAAATTACTCCTGTCCCATTTC
GGAGTGGTAATGGTGGCACTCAAGGGTATGGTTGTGGACTTTTTCTCACG
GATTTTTCTCAGGTTGGGAGTGGGGTGGTGGGGTTCGATCCCGTGATGTA
TGTTGGACCTGATTCGTTGGGCTTGGTGGGGGCTATGCCTTCGTATACTG
CCACTGCTGGGGTCAAAGAGGAGGAGGGAGGGGGTGGATCAGATTTATCT
GCCTCGTCTTTTCTGTCTGTGCCTCGACGAATCTTGGATTTGTGTGCAGG
GTGTGGAGTGCAAGGGATAGTGGCAGCTTTGAGAGCTCAACAGCAGGAGC
AGCAATCACAAAAAGAGCAGCAGCAGCAACCACAAAAGGTTTCCATTTTC
GAACAGCTGGTCTTACTAGAGCTTAACCCACGCGCCGTCCGCTTCGCCAC
TTTCAATGCTGCACTTAATCACCTCCAAGAACAAACCACAGTGCTTCAAC
ATGACGCCCGAACTGTCACTCCTGCAGATTTACCCTTGCCTGCATATGAC
ATTGTTTTGTCCAACCCCCCTTACATCCCTAACCCTGAACGAAGTGCTCG
ACACTTGCATCAGTACGGGGATGGAGGGACAACGGGTGAAGAGATAACGC
AAGCAGTAGTGGCCTTGGCAGCTCAAGTGCTGTCGCAGAAGAACAGTAAG
GGAGAGGAAGAGGGATGGCTATACCTTGTAGGGAATCTGGTTAATGTCGA
TACACTCCCGGAGCGAGTAGAGAGATGGTGGAATGATGGGTTGAGCTTGA
ATGGGGGGAAACAACAACAACAACAACAACAACAACAACAACAGGAGCAG
CAGCAGCAGCAGCAGAAACAACAGAGATTATACATCAAGGCTTTTCACGG
ATTAAAGTGGTCGCTGGCTGAGTACTCCGCTCTTATCCATAATTATCGAC
TGGAGGATACTGCCACAGCTCTAGCACAGGATGCAGCGGTGCATAGGTAC
AAGGAGGCCTTGAAAACGGCCCACGTGAGAGATGTAACGAATGGTCTGGT
GTTTGTTCAGTGGAAGAGTGAACCGGAAAAGGAGGAAGCATTCATGAGCA
AGAGATGCAGCAGCAGCAGCAGCAGCAACGACAACAACAACAACAACGAT
AAAAATGACGCTTGGAGCAGCTGTAAGAGGACTGCGGTCGCGCTGCATGC
GCAGCTCTGGCAGGTATTGGCCATGTATTACGACCCGGAAGCGAGCGATA
CGCGGAGGAAACTGGCAGAGGGTTGGATGTAAAATGATAAGACCCGACAC
AAAAGCAAGGGAGGAAATGACACAGTTCAAAGTATCTTGTCTTCTTGAAA
TCACTCTAAAGCC

Coding sequence (CDS) from alignment at scaffold_4:368821..371333-

>mRNA_1926 ID=mRNA_1926|Name=jgi.p|Nanoce1779_2|288926|organism=Nannochloropsis oceanica|type=CDS|length=2250bp|location=Sequence derived from alignment at scaffold_4:368821..371333- (Nannochloropsis oceanica)
ATGCTCGAGGAGGGAGAAGCTCTCCAAGAGCGTCTGCGGGATTTGCTTGA
AATGGAGGAGGGGAAAGAAGGGGAGAGCAACGCGAAGAGCATCGCAGCAC
GCATGTGGCCACTAGTCGGAAGATATAATTATATGAATCGGAAGGGACAG
GCAACAGACGTCATGTATATCCTGGACGAAGTGGGTTTAAGATTTCGTGA
TGTCTTTCCTCGACGATATCTTGGACTCGAGAAGAAAAAAGGGACCCAAA
GCGGGGACGATGAGGAAGAGTTGATAAATGCACGCACAGGCGCGGGTTTT
CGATGTGCGCTAGTATTTCACCCACTTACCAATGAGGCTTTTACGGCCTT
TTGGCCCCGTCGAGCGGTTGCGGAGGGTGAGATCGCGACGTGTGACAACT
TGCCTCATGGCCAAGCTGCGCGCCTTGCTCGATTGCAGGTGCTGATGAAA
TTGGATGCTGCTGCGAGCAGTACCATGCAGGAAGACAAAGAAGGGGAGAA
GGAAGGGATGGTTGAAACGGCGCACCGTCTTCGGCTGATTTTGGAGGGGG
AGGGGTACTGTGATGTTGGTCAAATCAACGCGCTGCTGGGGTTGGAGTCG
ACTTACGGGAAGCTTCTGCCAGTGTGGGATATCAGCGAGCCGCGGCTGCG
TGCTGAGTTTCTGAAGCACCTGGATGCGGCACTTAAAATGAGGACGACAT
CCATGACGACTGAAGAGAACAATACTATTTCCTCCTCCTCTTTGACTTCA
ACGGCACCAGCAAGCGCTGCTGCTGCTGCTGCTGCCGACTCTTCTCCTTC
TTCCTTGGTGTTTCTTATCAAATTTTTTCTGATGGGTATGGCTGTACCCT
GCAGTGACTTGCTCACGTTCGTACAGGACCACGGCTTACTAAAGCGGCTG
GAAGACCTTGGGTTGCTCTTCGTGGAAGGTCATGACAACAACAGCAACGA
CGATACCACCAATGGCAGTAATGATGTGTCCGTAAAGAGTTTAGTTCAAA
TTACTCCTGTCCCATTTCGGAGTGGTAATGGTGGCACTCAAGGGTATGGT
TGTGGACTTTTTCTCACGGATTTTTCTCAGGTTGGGAGTGGGGTGGTGGG
GTTCGATCCCGTGATGTATGTTGGACCTGATTCGTTGGGCTTGGTGGGGG
CTATGCCTTCGTATACTGCCACTGCTGGGGTCAAAGAGGAGGAGGGAGGG
GGTGGATCAGATTTATCTGCCTCGTCTTTTCTGTCTGTGCCTCGACGAAT
CTTGGATTTGTGTGCAGGGTGTGGAGTGCAAGGGATAGTGGCAGCTTTGA
GAGCTCAACAGCAGGAGCAGCAATCACAAAAAGAGCAGCAGCAGCAACCA
CAAAAGGTTTCCATTTTCGAACAGCTGGTCTTACTAGAGCTTAACCCACG
CGCCGTCCGCTTCGCCACTTTCAATGCTGCACTTAATCACCTCCAAGAAC
AAACCACAGTGCTTCAACATGACGCCCGAACTGTCACTCCTGCAGATTTA
CCCTTGCCTGCATATGACATTGTTTTGTCCAACCCCCCTTACATCCCTAA
CCCTGAACGAAGTGCTCGACACTTGCATCAGTACGGGGATGGAGGGACAA
CGGGTGAAGAGATAACGCAAGCAGTAGTGGCCTTGGCAGCTCAAGTGCTG
TCGCAGAAGAACAGTAAGGGAGAGGAAGAGGGATGGCTATACCTTGTAGG
GAATCTGGTTAATGTCGATACACTCCCGGAGCGAGTAGAGAGATGGTGGA
ATGATGGGTTGAGCTTGAATGGGGGGAAACAACAACAACAACAACAACAA
CAACAACAACAGGAGCAGCAGCAGCAGCAGCAGAAACAACAGAGATTATA
CATCAAGGCTTTTCACGGATTAAAGTGGTCGCTGGCTGAGTACTCCGCTC
TTATCCATAATTATCGACTGGAGGATACTGCCACAGCTCTAGCACAGGAT
GCAGCGGTGCATAGGTACAAGGAGGCCTTGAAAACGGCCCACGTGAGAGA
TGTAACGAATGGTCTGGTGTTTGTTCAGTGGAAGAGTGAACCGGAAAAGG
AGGAAGCATTCATGAGCAAGAGATGCAGCAGCAGCAGCAGCAGCAACGAC
AACAACAACAACAACGATAAAAATGACGCTTGGAGCAGCTGTAAGAGGAC
TGCGGTCGCGCTGCATGCGCAGCTCTGGCAGGTATTGGCCATGTATTACG
ACCCGGAAGCGAGCGATACGCGGAGGAAACTGGCAGAGGGTTGGATGTAA

Synonyms

Publications