Properties
| Property Name | Value |
|---|
| TranscriptId | 578515 |
| Track | FilteredModels2 |
| ProteinId | 578429 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:366651..368978 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1925 ID=mRNA_1925|Name=jgi.p|Nanoce1779_2|578429|organism=Nannochloropsis oceanica|type=mRNA|length=2123bp
CAGGGCGAGAAATGCGCGTGCCAACTGAGCTGCAGCAGTCTTCCCAGCTT
CCTGCCTCCGCGCCCACATCAACGCGTAGCACCAGCACTGCTCGACGAGC
CAGAACAAAAAACGCAGCATCGCCCGGCGGCTTAGTCACCCTATTGTCGA
TCCTGGTCATGCTGGCTAGTCCCTTGCGCTGGGGTGCGCATGGTATTGCT
TCTGCCTTTCTGATGCGGCCGCTTCAGGGCTCCCGCGCCTGTCAAATTCG
CAGCAGCCGACTGGCAATGAGCACCCGCACCACAGACACCAAGCCCCCTT
CTGCTGCGTCCAACTCCGCCATTCCTAATGTAATCGGCGTCCTTCCCAGC
TTTTCGCAGCTCTTGACCAGTGGGCGAGCCCTTTTACGAGATTCATTGCG
CGTAGCCCAGGAAGTGGGGCCCAGAGCTGGACTTGCCCGGACATTGAGTG
CTACCAAGGCCTTCAGCGAGACGGCACGCGATTTGCTCGTGGAGCTACGC
AAGTACCAGCAACAACAGCAGCAGGGTGAGGATACAGCAGTGTCGCCGTT
TACGCGCGCGACCTTGGCAAAGTCGATGCGTCAATTGTTCGAAAGGCTTG
GGGCGACGTACATTAAGGTCGGGCAATTTATCGCCTCTAGTCCCACCCTC
TTTCCCGAAGAATTCGTGCTGGAATTTCAAAAATGCCTTGACCAAAGCGC
TCCCGTCCCATACAGCGTCGTGCGCGAGACCCTCAGGGCAGAGCTAGGAG
GGGATAAGGCGTTAAACGAGAAATTTGAATTCATCGACCCAATCCCTTTG
GCCAGCGCGTCCATCGCTCAAGTCCACGTGGCCCGCCTCCGAGGAACTGG
GGAGGAGGTTGTCTTAAAGGTACTTAAACCGGGCGTGACTGAGACGTTGA
AAGCAGATCTGGGGTTTATATACCTCGTCTCTCGCTTGCTCGAAACGCTG
GCGCCCGACCTGGCACGCACGTCGCTTGGGGATATTGTCGCTGATATTCG
AACGTCCATTTTGGAGGAGGTGGATTTCAGAAAGGAACTTACAAATTTGG
AAGAATTTCGCGCGTTTTTGGCGAAGTCAGAATTGACGGCGGTCGCAACG
TGTCCGAGAGTTTTCCCTGCGTTGAGCACGCAGAGGGTGCTGACGATGGA
GAGGCTGCGGGGGGTGAGTTTGATTGATTTGGAGGGGATCAAGGCGTACA
CGGATGATCCAGAGGGAACTCTGATCGCGGCTTTGAATACCTGGAGTTTG
TCCGTCGTGCTATGTCCGAGTTTCCATGCTGATGTGCACAGTGGGAATTT
ATTGGTCCTGGAGGACGGACGTGTTGGCTTCATTGATTTTGGGATTGTCG
GACGGTTGTCGCCCGAGACCTGGCAGGCAGTGACGGAAGTGGGAGAAGGG
TTGGTGGGAGGGGACTACCGAGTCATGGCTCAGGGCTTGATTCGGATGGG
AGCGACGGCGGCGGCGGTGGATGAAGGGAAGCTCGCGGGGGATCTGCAGG
CGTTGTTTGAACGGTTGAGGACGTTGGACCCACAGATGGTGGTGATTGCG
GATGTAGAGAGCCAGACGGCGGCGGCGTCTCTGCAAGTCGATGAAGAGCA
AGTCACGAGATTGTTATTGGAGATTGTGGAAGTGGCTAGTAGTAACGGCT
TGAAACTGCCTAGGCAGTTTGGATTGTTGATAAAGCAAAGTCTTTACTTT
GACCGGTATACGCGGATATTGGCTCCTACGTTAGATCCGTTGAGAGATTC
AAGAGTAAATTTTCCACGAACGGTGGAGGAGGCGGAGAAAGTATCGTCTG
GGGGTAGAGGAAGGATGGGGGCACGAAGGAGGGAGAGGGAGGAAGACTTG
GGCGTCGTCATAGATGTGACGCCTAAAAAGTAGGGAGGACGGGAGGGAAG
AAAAGTGTGAGGGTGCCCAAAAATGTAGAGTTATTGATAGAGAAATGGAA
TGAAAAATAAAAAGGGGCTTTAGAGTGATTTCAAGAAGACAAGATACTTT
GAACTGTGTCATTTCCTCCCTTGCTTTTGTGTCGGGTCTTATCATTTTAC
ATCCAACCCTCTGCCAGTTTCCTCCGCGTATCGCTCGCTTCCGGGTCGTA
ATACATGGCCAATACCTGCCAGA back to topprotein sequence of jgi.p|Nanoce1779_2|578429 >mRNA_1925-protein ID=mRNA_1925-protein|Name=jgi.p|Nanoce1779_2|578429|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp
MRVPTELQQSSQLPASAPTSTRSTSTARRARTKNAASPGGLVTLLSILVM
LASPLRWGAHGIASAFLMRPLQGSRACQIRSSRLAMSTRTTDTKPPSAAS
NSAIPNVIGVLPSFSQLLTSGRALLRDSLRVAQEVGPRAGLARTLSATKA
FSETARDLLVELRKYQQQQQQGEDTAVSPFTRATLAKSMRQLFERLGATY
IKVGQFIASSPTLFPEEFVLEFQKCLDQSAPVPYSVVRETLRAELGGDKA
LNEKFEFIDPIPLASASIAQVHVARLRGTGEEVVLKVLKPGVTETLKADL
GFIYLVSRLLETLAPDLARTSLGDIVADIRTSILEEVDFRKELTNLEEFR
AFLAKSELTAVATCPRVFPALSTQRVLTMERLRGVSLIDLEGIKAYTDDP
EGTLIAALNTWSLSVVLCPSFHADVHSGNLLVLEDGRVGFIDFGIVGRLS
PETWQAVTEVGEGLVGGDYRVMAQGLIRMGATAAAVDEGKLAGDLQALFE
RLRTLDPQMVVIADVESQTAAASLQVDEEQVTRLLLEIVEVASSNGLKLP
RQFGLLIKQSLYFDRYTRILAPTLDPLRDSRVNFPRTVEEAEKVSSGGRG
RMGARRREREEDLGVVIDVTPKK* back to topmRNA from alignment at scaffold_4:366651..368978+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1925 ID=mRNA_1925|Name=jgi.p|Nanoce1779_2|578429|organism=Nannochloropsis oceanica|type=mRNA|length=2328bp|location=Sequence derived from alignment at scaffold_4:366651..368978+ (Nannochloropsis oceanica)
CAGGGCGAGAAATGCGCGTGCCAACTGAGCTGCAGCAGTCTTCCCAGCTT
CCTGCCTCCGCGCCCACATCAACGCGTAGCACCAGCACTGCTCGACGAGC
CAGAACAAAAAACGCAGCATCGCCCGGCGGCTTAGTCACCCTATTGTCGA
TCCTGGTCATGCTGGCTAGTCCCTTGCGCTGGGGTGCGCATGGTATTGCT
TCTGCCTTTCTGATGCGGCCGCTTCAGGGCTCCCGCGCCTGTCAAATTCG
CAGCAGCCGACTGGCAATGAGCACCCGCACCACAGACACCAAGCCCCCTT
CTGCTGCGTCCAACTCCGCCATTCCTAATGTAATCGGCGTCCTTCCCAGC
TTTTCGCAGCTCTTGACCAGTGGGCGAGCCCTTTTACGAGATTCATTGCG
CGTAGCCCAGGAAGTGGGGCCCAGAGCTGGACTTGCCCGGACATTGAGTG
CTACCAAGGCCTTCAGCGAGACGGCACGCGATTTGCTCGTGGAGCTACGC
AAGTACCAGCAACAACAGCAGCAGGGTGAGGATACAGCAGTGTCGCCGTT
TACGCGCGCGACCTTGGCAAAGTCGATGCGTCAATTGTTCGAAAGGCTTG
GGGCGACGTACATTAAGGTTAGTGGTATGAGATGGAGAGGGAGGGAGAGA
GGGAGAAAGGAAGTAAGGATGAGTATCTTGTCATCTTTTACGATGATAAC
CTTGTCATCTTTTCGTCGACCAGAAAAGAATTGAATATGGGTTGTGAAGA
GCTTTAGCAATCAATGCAAATACTTGCACTCACCAACCTCCATCCCTCTG
TCCCCCCATCCCATCCTCACAGGTCGGGCAATTTATCGCCTCTAGTCCCA
CCCTCTTTCCCGAAGAATTCGTGCTGGAATTTCAAAAATGCCTTGACCAA
AGCGCTCCCGTCCCATACAGCGTCGTGCGCGAGACCCTCAGGGCAGAGCT
AGGAGGGGATAAGGCGTTAAACGAGAAATTTGAATTCATCGACCCAATCC
CTTTGGCCAGCGCGTCCATCGCTCAAGTCCACGTGGCCCGCCTCCGAGGA
ACTGGGGAGGAGGTTGTCTTAAAGGTACTTAAACCGGGCGTGACTGAGAC
GTTGAAAGCAGATCTGGGGTTTATATACCTCGTCTCTCGCTTGCTCGAAA
CGCTGGCGCCCGACCTGGCACGCACGTCGCTTGGGGATATTGTCGCTGAT
ATTCGAACGTCCATTTTGGAGGAGGTGGATTTCAGAAAGGAACTTACAAA
TTTGGAAGAATTTCGCGCGTTTTTGGCGAAGTCAGAATTGACGGCGGTCG
CAACGTGTCCGAGAGTTTTCCCTGCGTTGAGCACGCAGAGGGTGCTGACG
ATGGAGAGGCTGCGGGGGGTGAGTTTGATTGATTTGGAGGGGATCAAGGC
GTACACGGATGATCCAGAGGGAACTCTGATCGCGGCTTTGAATACCTGGA
GTTTGTCCGTCGTGCTATGTCCGAGTTTCCATGCTGATGTGCACAGTGGG
AATTTATTGGTCCTGGAGGACGGACGTGTTGGCTTCATTGATTTTGGGAT
TGTCGGACGGTTGTCGCCCGAGACCTGGCAGGCAGTGACGGAAGTGGGAG
AAGGGTTGGTGGGAGGGGACTACCGAGTCATGGCTCAGGGCTTGATTCGG
ATGGGAGCGACGGCGGCGGCGGTGGATGAAGGGAAGCTCGCGGGGGATCT
GCAGGCGTTGTTTGAACGGTTGAGGACGTTGGACCCACAGATGGTGGTGA
TTGCGGATGTAGAGAGCCAGACGGCGGCGGCGTCTCTGCAAGTCGATGAA
GAGCAAGTCACGAGATTGTTATTGGAGATTGTGGAAGTGGCTAGTAGTAA
CGGCTTGAAACTGCCTAGGCAGTTTGGATTGTTGATAAAGCAAAGTCTTT
ACTTTGACCGGTATACGCGGATATTGGCTCCTACGTTAGATCCGTTGAGA
GATTCAAGAGTAAATTTTCCACGAACGGTGGAGGAGGCGGAGAAAGTATC
GTCTGGGGGTAGAGGAAGGATGGGGGCACGAAGGAGGGAGAGGGAGGAAG
ACTTGGGCGTCGTCATAGATGTGACGCCTAAAAAGTAGGGAGGACGGGAG
GGAAGAAAAGTGTGAGGGTGCCCAAAAATGTAGAGTTATTGATAGAGAAA
TGGAATGAAAAATAAAAAGGGGCTTTAGAGTGATTTCAAGAAGACAAGAT
ACTTTGAACTGTGTCATTTCCTCCCTTGCTTTTGTGTCGGGTCTTATCAT
TTTACATCCAACCCTCTGCCAGTTTCCTCCGCGTATCGCTCGCTTCCGGG
TCGTAATACATGGCCAATACCTGCCAGA back to topCoding sequence (CDS) from alignment at scaffold_4:366651..368978+ >mRNA_1925 ID=mRNA_1925|Name=jgi.p|Nanoce1779_2|578429|organism=Nannochloropsis oceanica|type=CDS|length=3744bp|location=Sequence derived from alignment at scaffold_4:366651..368978+ (Nannochloropsis oceanica)
ATGCGCGTGCCAACTGAGCTGCAGCAGTCTTCCCAGCTTCCTGCCTCCGC
GCCCACATCAACGCGTAGCACCAGCACTGCTCGACGAGCCAGAACAAAAA
ACGCAGCATCGCCCGGCGGCTTAGTCACCCTATTGTCGATCCTGGTCATG
CTGGCTAGTCCCTTGCGCTGGGGTGCGCATGGTATTGCTTCTGCCTTTCT
GATGCGGCCGCTTCAGGGCTCCCGCGCCTGTCAAATTCGCAGCAGCCGAC
TGGCAATGAGCACCCGCACCACAGACACCAAGCCCCCTTCTGCTGCGTCC
AACTCCGCCATTCCTAATGTAATCGGCGTCCTTCCCAGCTTTTCGCAGCT
CTTGACCAGTGGGCGAGCCCTTTTACGAGATTCATTGCGCGTAGCCCAGG
AAGTGGGGCCCAGAGCTGGACTTGCCCGGACATTGAGTGCTACCAAGGCC
TTCAGCGAGACGGCACGCGATTTGCTCGTGGAGCTACGCAAGTACCAGCA
ACAACAGCAGCAGGGTGAGGATACAGCAGTGTCGCCGTTTACGCGCGCGA
CCTTGGCAAAGTCGATGCGTCAATTGTTCGAAAGGCTTGGGGCGACGTAC
ATTAAGGTCGGGCAATTTATCGCCTCTAGTCCCACCCTCTTTCCCGAAGA
ATTCGTGCTGGAATTTCAAAAATGCCTTGACCAAAGCGCTCCCGTCCCAT
ACAGCGTCGTGCGCGAGACCCTCAGGGCAGAGCTAGGAGGGGATAAGGCG
TTAAACGAGAAATTTGAATTCATCGACCCAATCCCTTTGGCCAGCGCGTC
CATCGCTCAAGTCCACGTGGCCCGCCTCCGAGGAACTGGGGAGGAGGTTG
TCTTAAAGGTACTTAAACCGGGCGTGACTGAGACGTTGAAAGCAGATCTG
GGGTTTATATACCTCGTCTCTCGCTTGCTCGAAACGCTGGCGCCCGACCT
GGCACGCACGTCGCTTGGGGATATTGTCGCTGATATTCGAACGTCCATTT
TGGAGGAGGTGGATTTCAGAAAGGAACTTACAAATTTGGAAGAATTTCGC
GCGTTTTTGGCGAAGTCAGAATTGACGGCGGTCGCAACGTGTCCGAGAGT
TTTCCCTGCGTTGAGCACGCAGAGGGTGCTGACGATGGAGAGGCTGCGGG
GGGTGAGTTTGATTGATTTGGAGGGGATCAAGGCGTACACGGATGATCCA
GAGGGAACTCTGATCGCGGCTTTGAATACCTGGAGTTTGTCCGTCGTGCT
ATGTCCGAGTTTCCATGCTGATGTGCACAGTGGGAATTTATTGGTCCTGG
AGGACGGACGTGTTGGCTTCATTGATTTTGGGATTGTCGGACGGTTGTCG
CCCGAGACCTGGCAGGCAGTGACGGAAGTGGGAGAAGGGTTGGTGGGAGG
GGACTACCGAGTCATGGCTCAGGGCTTGATTCGGATGGGAGCGACGGCGG
CGGCGGTGGATGAAGGGAAGCTCGCGGGGGATCTGCAGGCGTTGTTTGAA
CGGTTGAGGACGTTGGACCCACAGATGGTGGTGATTGCGGATGTAGAGAG
CCAGACGGCGGCGGCGTCTCTGCAAGTCGATGAAGAGCAAGTCACGAGAT
TGTTATTGGAGATTGTGGAAGTGGCTAGTAGTAACGGCTTGAAACTGCCT
AGGCAGTTTGGATTGTTGATAAAGCAAAGTCTTTACTTTGACCGGTATAC
GCGGATATTGGCTCCTACGTTAGATCCGTTGAGAGATTCAAGAGTAAATT
TTCCACGAACGGTGGAGGAGGCGGAGAAAGTATCGTCTGGGGGTAGAGGA
AGGATGGGGGCACGAAGGAGGGAGAGGGAGGAAGACTTGGGCGTCGTCAT
AGATGTGACGCCTAAAAAGTAGATGCGCGTGCCAACTGAGCTGCAGCAGT
CTTCCCAGCTTCCTGCCTCCGCGCCCACATCAACGCGTAGCACCAGCACT
GCTCGACGAGCCAGAACAAAAAACGCAGCATCGCCCGGCGGCTTAGTCAC
CCTATTGTCGATCCTGGTCATGCTGGCTAGTCCCTTGCGCTGGGGTGCGC
ATGGTATTGCTTCTGCCTTTCTGATGCGGCCGCTTCAGGGCTCCCGCGCC
TGTCAAATTCGCAGCAGCCGACTGGCAATGAGCACCCGCACCACAGACAC
CAAGCCCCCTTCTGCTGCGTCCAACTCCGCCATTCCTAATGTAATCGGCG
TCCTTCCCAGCTTTTCGCAGCTCTTGACCAGTGGGCGAGCCCTTTTACGA
GATTCATTGCGCGTAGCCCAGGAAGTGGGGCCCAGAGCTGGACTTGCCCG
GACATTGAGTGCTACCAAGGCCTTCAGCGAGACGGCACGCGATTTGCTCG
TGGAGCTACGCAAGTACCAGCAACAACAGCAGCAGGGTGAGGATACAGCA
GTGTCGCCGTTTACGCGCGCGACCTTGGCAAAGTCGATGCGTCAATTGTT
CGAAAGGCTTGGGGCGACGTACATTAAGGTCGGGCAATTTATCGCCTCTA
GTCCCACCCTCTTTCCCGAAGAATTCGTGCTGGAATTTCAAAAATGCCTT
GACCAAAGCGCTCCCGTCCCATACAGCGTCGTGCGCGAGACCCTCAGGGC
AGAGCTAGGAGGGGATAAGGCGTTAAACGAGAAATTTGAATTCATCGACC
CAATCCCTTTGGCCAGCGCGTCCATCGCTCAAGTCCACGTGGCCCGCCTC
CGAGGAACTGGGGAGGAGGTTGTCTTAAAGGTACTTAAACCGGGCGTGAC
TGAGACGTTGAAAGCAGATCTGGGGTTTATATACCTCGTCTCTCGCTTGC
TCGAAACGCTGGCGCCCGACCTGGCACGCACGTCGCTTGGGGATATTGTC
GCTGATATTCGAACGTCCATTTTGGAGGAGGTGGATTTCAGAAAGGAACT
TACAAATTTGGAAGAATTTCGCGCGTTTTTGGCGAAGTCAGAATTGACGG
CGGTCGCAACGTGTCCGAGAGTTTTCCCTGCGTTGAGCACGCAGAGGGTG
CTGACGATGGAGAGGCTGCGGGGGGTGAGTTTGATTGATTTGGAGGGGAT
CAAGGCGTACACGGATGATCCAGAGGGAACTCTGATCGCGGCTTTGAATA
CCTGGAGTTTGTCCGTCGTGCTATGTCCGAGTTTCCATGCTGATGTGCAC
AGTGGGAATTTATTGGTCCTGGAGGACGGACGTGTTGGCTTCATTGATTT
TGGGATTGTCGGACGGTTGTCGCCCGAGACCTGGCAGGCAGTGACGGAAG
TGGGAGAAGGGTTGGTGGGAGGGGACTACCGAGTCATGGCTCAGGGCTTG
ATTCGGATGGGAGCGACGGCGGCGGCGGTGGATGAAGGGAAGCTCGCGGG
GGATCTGCAGGCGTTGTTTGAACGGTTGAGGACGTTGGACCCACAGATGG
TGGTGATTGCGGATGTAGAGAGCCAGACGGCGGCGGCGTCTCTGCAAGTC
GATGAAGAGCAAGTCACGAGATTGTTATTGGAGATTGTGGAAGTGGCTAG
TAGTAACGGCTTGAAACTGCCTAGGCAGTTTGGATTGTTGATAAAGCAAA
GTCTTTACTTTGACCGGTATACGCGGATATTGGCTCCTACGTTAGATCCG
TTGAGAGATTCAAGAGTAAATTTTCCACGAACGGTGGAGGAGGCGGAGAA
AGTATCGTCTGGGGGTAGAGGAAGGATGGGGGCACGAAGGAGGGAGAGGG
AGGAAGACTTGGGCGTCGTCATAGATGTGACGCCTAAAAAGTAG back to top
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