jgi.p|Nanoce1779_2|628103, mRNA_1922 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628103
Unique NamemRNA_1922
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length993
Alignment locationscaffold_4:356762..357754 +

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Properties
Property NameValue
TranscriptId628189
TrackFilteredModels2
ProteinId628103
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:356762..357754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628103gene_1922Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628103mRNA_1922-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1922CDS_1922Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1922 ID=mRNA_1922|Name=jgi.p|Nanoce1779_2|628103|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
TTTGGTGGGATGGGGGGAGGAGGAGGCTTTGCAGGGGGAGGGAGTGCCTT
TGGCATCACAAGTGGTAATACTGCTGGGGCTGGTCTGAGCATGGGAGGGA
GTAATTTGGGGATGACGGGAGGAATGGCCAGTGGTATGCTCGTGACCGCA
CCGACGCCTCAGCAGCAGGAGCAGCAACGTCAACTGCAGCAACGGCAGTT
TTGGGAGCAGGAATTGAACATGCTCCGAGAGGCTTACACACCCCAACAAC
AACAGCAGCAGCAACAGCAACAACCAGCTCAACAATCCGTCGGGCTCTTT
GGCGCTTCTTTCCAAACCCAGCAACAGCAACAAAACCAACAGCAACAGCA
GCAGGCCGCTCGAGTTGTAGACTACAAGTTTGGCTTTCGCGTGACAGACA
ATAGCCTCGGTGTCTCACGTCAAGTCCTCCTGACGGACCACGGCGCCATC
CAAAGCAAACTTCAAAACCAACAAGCAGAGATGAAACAAATTCAAGAACA
CTTACAGAAACTGGGGGTAGGGGTCCAGGCGCTTGATGGACAGGCACAAG
CAGCGAAGGAGAGGTTGGCGCGGTGTAGGGAGGTGCAGATGGGCCTGACG
AATCGGTTTTTGGTGGTGTTGCAGCGGCTGCAAGTGTTGCATCAGGTGAA
CCGTCCGTTCAGCCAGGAGGAGAAAGAGATGCGAGGAAGGCTGGAAGGGA
TGTTGGGAAGATTAGAAGACGCCATTAGAACCTTGAATGAGGTGGGGGGT
GTGGTGGAGGAGGAGGAGGCGGATTTGCGGGAAGAGTCACGGCAAGAGAT
GACTTGTGATTTGGCACGAGAGGACTTGCTATTGTTGCAGCAGGCGTTGG
AGAAGCAGCAGGAGGGTTTGGATTTCTTGACGACGGCCTTGCGCCGGGAC
TGTAGGGGGGTAGAGATGCTTAAGGAGAAGTTGGAGGAGGGGCGAGGGGG
AGGGGGAGCGGGAGGAGGAGGAGCAGGAGGAGTGCCTTTGTAA
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protein sequence of jgi.p|Nanoce1779_2|628103

>mRNA_1922-protein ID=mRNA_1922-protein|Name=jgi.p|Nanoce1779_2|628103|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MGGGGGFAGGGSAFGITSGNTAGAGLSMGGSNLGMTGGMASGMLVTAPTP
QQQEQQRQLQQRQFWEQELNMLREAYTPQQQQQQQQQQPAQQSVGLFGAS
FQTQQQQQNQQQQQQAARVVDYKFGFRVTDNSLGVSRQVLLTDHGAIQSK
LQNQQAEMKQIQEHLQKLGVGVQALDGQAQAAKERLARCREVQMGLTNRF
LVVLQRLQVLHQVNRPFSQEEKEMRGRLEGMLGRLEDAIRTLNEVGGVVE
EEEADLREESRQEMTCDLAREDLLLLQQALEKQQEGLDFLTTALRRDCRG
VEMLKEKLEEGRGGGGAGGGGAGGVPL*
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mRNA from alignment at scaffold_4:356762..357754+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1922 ID=mRNA_1922|Name=jgi.p|Nanoce1779_2|628103|organism=Nannochloropsis oceanica|type=mRNA|length=993bp|location=Sequence derived from alignment at scaffold_4:356762..357754+ (Nannochloropsis oceanica)
TTTGGTGGGATGGGGGGAGGAGGAGGCTTTGCAGGGGGAGGGAGTGCCTT
TGGCATCACAAGTGGTAATACTGCTGGGGCTGGTCTGAGCATGGGAGGGA
GTAATTTGGGGATGACGGGAGGAATGGCCAGTGGTATGCTCGTGACCGCA
CCGACGCCTCAGCAGCAGGAGCAGCAACGTCAACTGCAGCAACGGCAGTT
TTGGGAGCAGGAATTGAACATGCTCCGAGAGGCTTACACACCCCAACAAC
AACAGCAGCAGCAACAGCAACAACCAGCTCAACAATCCGTCGGGCTCTTT
GGCGCTTCTTTCCAAACCCAGCAACAGCAACAAAACCAACAGCAACAGCA
GCAGGCCGCTCGAGTTGTAGACTACAAGTTTGGCTTTCGCGTGACAGACA
ATAGCCTCGGTGTCTCACGTCAAGTCCTCCTGACGGACCACGGCGCCATC
CAAAGCAAACTTCAAAACCAACAAGCAGAGATGAAACAAATTCAAGAACA
CTTACAGAAACTGGGGGTAGGGGTCCAGGCGCTTGATGGACAGGCACAAG
CAGCGAAGGAGAGGTTGGCGCGGTGTAGGGAGGTGCAGATGGGCCTGACG
AATCGGTTTTTGGTGGTGTTGCAGCGGCTGCAAGTGTTGCATCAGGTGAA
CCGTCCGTTCAGCCAGGAGGAGAAAGAGATGCGAGGAAGGCTGGAAGGGA
TGTTGGGAAGATTAGAAGACGCCATTAGAACCTTGAATGAGGTGGGGGGT
GTGGTGGAGGAGGAGGAGGCGGATTTGCGGGAAGAGTCACGGCAAGAGAT
GACTTGTGATTTGGCACGAGAGGACTTGCTATTGTTGCAGCAGGCGTTGG
AGAAGCAGCAGGAGGGTTTGGATTTCTTGACGACGGCCTTGCGCCGGGAC
TGTAGGGGGGTAGAGATGCTTAAGGAGAAGTTGGAGGAGGGGCGAGGGGG
AGGGGGAGCGGGAGGAGGAGGAGCAGGAGGAGTGCCTTTGTAA
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Coding sequence (CDS) from alignment at scaffold_4:356762..357754+

>mRNA_1922 ID=mRNA_1922|Name=jgi.p|Nanoce1779_2|628103|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_4:356762..357754+ (Nannochloropsis oceanica)
ATGGGGGGAGGAGGAGGCTTTGCAGGGGGAGGGAGTGCCTTTGGCATCAC
AAGTGGTAATACTGCTGGGGCTGGTCTGAGCATGGGAGGGAGTAATTTGG
GGATGACGGGAGGAATGGCCAGTGGTATGCTCGTGACCGCACCGACGCCT
CAGCAGCAGGAGCAGCAACGTCAACTGCAGCAACGGCAGTTTTGGGAGCA
GGAATTGAACATGCTCCGAGAGGCTTACACACCCCAACAACAACAGCAGC
AGCAACAGCAACAACCAGCTCAACAATCCGTCGGGCTCTTTGGCGCTTCT
TTCCAAACCCAGCAACAGCAACAAAACCAACAGCAACAGCAGCAGGCCGC
TCGAGTTGTAGACTACAAGTTTGGCTTTCGCGTGACAGACAATAGCCTCG
GTGTCTCACGTCAAGTCCTCCTGACGGACCACGGCGCCATCCAAAGCAAA
CTTCAAAACCAACAAGCAGAGATGAAACAAATTCAAGAACACTTACAGAA
ACTGGGGGTAGGGGTCCAGGCGCTTGATGGACAGGCACAAGCAGCGAAGG
AGAGGTTGGCGCGGTGTAGGGAGGTGCAGATGGGCCTGACGAATCGGTTT
TTGGTGGTGTTGCAGCGGCTGCAAGTGTTGCATCAGGTGAACCGTCCGTT
CAGCCAGGAGGAGAAAGAGATGCGAGGAAGGCTGGAAGGGATGTTGGGAA
GATTAGAAGACGCCATTAGAACCTTGAATGAGGTGGGGGGTGTGGTGGAG
GAGGAGGAGGCGGATTTGCGGGAAGAGTCACGGCAAGAGATGACTTGTGA
TTTGGCACGAGAGGACTTGCTATTGTTGCAGCAGGCGTTGGAGAAGCAGC
AGGAGGGTTTGGATTTCTTGACGACGGCCTTGCGCCGGGACTGTAGGGGG
GTAGAGATGCTTAAGGAGAAGTTGGAGGAGGGGCGAGGGGGAGGGGGAGC
GGGAGGAGGAGGAGCAGGAGGAGTGCCTTTGTAA
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Synonyms
Publications