jgi.p|Nanoce1779_2|578419, mRNA_1921 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578419
Unique NamemRNA_1921
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1534
Alignment locationscaffold_4:354183..355716 -

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Properties
Property NameValue
TranscriptId578505
TrackFilteredModels2
ProteinId578419
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:354183..355716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578419gene_1921Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578419mRNA_1921-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1921CDS_1921Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1921 ID=mRNA_1921|Name=jgi.p|Nanoce1779_2|578419|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp
AGGACCTTTACGGACAGGACAGGCGCTGCCACGACGGTACCCCAGCTCCA
TCCACGGTGTTGCGATACGAACATATTTAGCTCTCGGCCTCGGCAGGCGG
AGAGTGTTTCGCCTCCCTTCAATTCCGTCCCCGCTCTGCCCCTTTCGCTC
CTACCCGACAAACAAACATGGCATCCACCGCTTCCTCTTTAGAGGACGGG
ATAAGCAGCAGCCCCGGCACGGGTTATCTTCGTGAAAGCAGCTTGGAGTC
TCAGCTGGAAACCCTGAGCTTGTTGCCTCACAAGACGGAGGAGGATGGCG
AGGAGCGCATCCATGGTGCTAGCGGCAGCGGGAGCAACACCCCACCGCTC
ACCAGCACTGTCTCCACCGCCAGCAGCTCAAGTACCAGGTGCAGCAGTGG
CAGCGGCATCATCTTGGGCAATAGTGGTCAGTCGAAGAAAAGCGTGTTGG
ACATGCTGCACAACAACGTCGTGAGCATGGACAATGGCAAAGCTGCGAAT
GCCCACTACATCAACACCCACCCAGAAGTTCGCGCTGCCTTGCAAGATTT
CTTGAGTGCCGTCTTGCTTGAAAAGCCTGAAGATGTGTATGCGTTCGCTC
GCATTCATTTCAGCCAACGTGGTAAAGTTCCCAAGGACAAGCTTTTGCGG
CCCTTGGTCATCTGTGGGCCGTCTGGGGTGGGGAAGGGGACGTTAATGAA
CATGCTTTTTGAGGAGTTTGGAGGGTATTTTGGCTTCTCTGTCTCGCACA
CTACTCGGGCCCCGCGTCCTGGGGAGGTGCATGGCGTACATTATAATTTT
ACTTCGAAAAAGGTGATGGCGGAGGCGATAGACGAAGGACGGTTCCTGGA
GTTTGCTGAGGTCCACACTAATTTGTACGGGACAAGTTTGGAGGCTGTGC
GGAAAGTACAACGCGCGGGGAAGGTATGCGTGTTGGATATTGACGTGCAG
GGGGTGATGAAAATCAAGCAGACGGACGTCAACCCCCATCTACTCTTCGT
AGCCCCCCCGTCGGTGGAGCAGCTGGAGGCCAGGTTGAGGGGGCGCGCGA
CGGAGTCGGCCGAGGCCATCGAGACGAGGCTCTCGGCGGCACGGGCGGAA
ATCGAATATGGCACGGCAGAAGGGCACTTTGAGCACGTGGTGGTGAATGA
TGAGTTGGAAAACGCGTACGCGGAGTTGAAGGCGACGTTGATTGGGTATT
ACCCGCATCTGGCGACCACAACGGTCTGAGGAGGAAGAGGGAGCGAGGGA
GAGAAGAAAGAGGTAGAGAGGTAGAGAGACAGAGAATAGCGACAGGAAAC
AGACAGAAGATAAGAAGATAAACTATTTAGATCCTGATTGAACGACGAGT
GGTAAGAGAGGATACACAGACACCCACACGCCCACACACACACACAGTGT
TGTTATGGTCCGACGCAATTGACAGGACAGAGAGAGGGCAAAAAAAGAGC
GCGGGACCTTAAAATTAGACACAGAATGAATAAGACCTTCACCGTCGGCA
ACAGCAACAACAGCAGCAACAACAGCAGCAGCAG
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protein sequence of jgi.p|Nanoce1779_2|578419

>mRNA_1921-protein ID=mRNA_1921-protein|Name=jgi.p|Nanoce1779_2|578419|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MASTASSLEDGISSSPGTGYLRESSLESQLETLSLLPHKTEEDGEERIHG
ASGSGSNTPPLTSTVSTASSSSTRCSSGSGIILGNSGQSKKSVLDMLHNN
VVSMDNGKAANAHYINTHPEVRAALQDFLSAVLLEKPEDVYAFARIHFSQ
RGKVPKDKLLRPLVICGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPR
PGEVHGVHYNFTSKKVMAEAIDEGRFLEFAEVHTNLYGTSLEAVRKVQRA
GKVCVLDIDVQGVMKIKQTDVNPHLLFVAPPSVEQLEARLRGRATESAEA
IETRLSAARAEIEYGTAEGHFEHVVVNDELENAYAELKATLIGYYPHLAT
TTV*
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mRNA from alignment at scaffold_4:354183..355716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1921 ID=mRNA_1921|Name=jgi.p|Nanoce1779_2|578419|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp|location=Sequence derived from alignment at scaffold_4:354183..355716- (Nannochloropsis oceanica)
AGGACCTTTACGGACAGGACAGGCGCTGCCACGACGGTACCCCAGCTCCA
TCCACGGTGTTGCGATACGAACATATTTAGCTCTCGGCCTCGGCAGGCGG
AGAGTGTTTCGCCTCCCTTCAATTCCGTCCCCGCTCTGCCCCTTTCGCTC
CTACCCGACAAACAAACATGGCATCCACCGCTTCCTCTTTAGAGGACGGG
ATAAGCAGCAGCCCCGGCACGGGTTATCTTCGTGAAAGCAGCTTGGAGTC
TCAGCTGGAAACCCTGAGCTTGTTGCCTCACAAGACGGAGGAGGATGGCG
AGGAGCGCATCCATGGTGCTAGCGGCAGCGGGAGCAACACCCCACCGCTC
ACCAGCACTGTCTCCACCGCCAGCAGCTCAAGTACCAGGTGCAGCAGTGG
CAGCGGCATCATCTTGGGCAATAGTGGTCAGTCGAAGAAAAGCGTGTTGG
ACATGCTGCACAACAACGTCGTGAGCATGGACAATGGCAAAGCTGCGAAT
GCCCACTACATCAACACCCACCCAGAAGTTCGCGCTGCCTTGCAAGATTT
CTTGAGTGCCGTCTTGCTTGAAAAGCCTGAAGATGTGTATGCGTTCGCTC
GCATTCATTTCAGCCAACGTGGTAAAGTTCCCAAGGACAAGCTTTTGCGG
CCCTTGGTCATCTGTGGGCCGTCTGGGGTGGGGAAGGGGACGTTAATGAA
CATGCTTTTTGAGGAGTTTGGAGGGTATTTTGGCTTCTCTGTCTCGCACA
CTACTCGGGCCCCGCGTCCTGGGGAGGTGCATGGCGTACATTATAATTTT
ACTTCGAAAAAGGTGATGGCGGAGGCGATAGACGAAGGACGGTTCCTGGA
GTTTGCTGAGGTCCACACTAATTTGTACGGGACAAGTTTGGAGGCTGTGC
GGAAAGTACAACGCGCGGGGAAGGTATGCGTGTTGGATATTGACGTGCAG
GGGGTGATGAAAATCAAGCAGACGGACGTCAACCCCCATCTACTCTTCGT
AGCCCCCCCGTCGGTGGAGCAGCTGGAGGCCAGGTTGAGGGGGCGCGCGA
CGGAGTCGGCCGAGGCCATCGAGACGAGGCTCTCGGCGGCACGGGCGGAA
ATCGAATATGGCACGGCAGAAGGGCACTTTGAGCACGTGGTGGTGAATGA
TGAGTTGGAAAACGCGTACGCGGAGTTGAAGGCGACGTTGATTGGGTATT
ACCCGCATCTGGCGACCACAACGGTCTGAGGAGGAAGAGGGAGCGAGGGA
GAGAAGAAAGAGGTAGAGAGGTAGAGAGACAGAGAATAGCGACAGGAAAC
AGACAGAAGATAAGAAGATAAACTATTTAGATCCTGATTGAACGACGAGT
GGTAAGAGAGGATACACAGACACCCACACGCCCACACACACACACAGTGT
TGTTATGGTCCGACGCAATTGACAGGACAGAGAGAGGGCAAAAAAAGAGC
GCGGGACCTTAAAATTAGACACAGAATGAATAAGACCTTCACCGTCGGCA
ACAGCAACAACAGCAGCAACAACAGCAGCAGCAG
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Coding sequence (CDS) from alignment at scaffold_4:354183..355716-

>mRNA_1921 ID=mRNA_1921|Name=jgi.p|Nanoce1779_2|578419|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_4:354183..355716- (Nannochloropsis oceanica)
ATGGCATCCACCGCTTCCTCTTTAGAGGACGGGATAAGCAGCAGCCCCGG
CACGGGTTATCTTCGTGAAAGCAGCTTGGAGTCTCAGCTGGAAACCCTGA
GCTTGTTGCCTCACAAGACGGAGGAGGATGGCGAGGAGCGCATCCATGGT
GCTAGCGGCAGCGGGAGCAACACCCCACCGCTCACCAGCACTGTCTCCAC
CGCCAGCAGCTCAAGTACCAGGTGCAGCAGTGGCAGCGGCATCATCTTGG
GCAATAGTGGTCAGTCGAAGAAAAGCGTGTTGGACATGCTGCACAACAAC
GTCGTGAGCATGGACAATGGCAAAGCTGCGAATGCCCACTACATCAACAC
CCACCCAGAAGTTCGCGCTGCCTTGCAAGATTTCTTGAGTGCCGTCTTGC
TTGAAAAGCCTGAAGATGTGTATGCGTTCGCTCGCATTCATTTCAGCCAA
CGTGGTAAAGTTCCCAAGGACAAGCTTTTGCGGCCCTTGGTCATCTGTGG
GCCGTCTGGGGTGGGGAAGGGGACGTTAATGAACATGCTTTTTGAGGAGT
TTGGAGGGTATTTTGGCTTCTCTGTCTCGCACACTACTCGGGCCCCGCGT
CCTGGGGAGGTGCATGGCGTACATTATAATTTTACTTCGAAAAAGGTGAT
GGCGGAGGCGATAGACGAAGGACGGTTCCTGGAGTTTGCTGAGGTCCACA
CTAATTTGTACGGGACAAGTTTGGAGGCTGTGCGGAAAGTACAACGCGCG
GGGAAGGTATGCGTGTTGGATATTGACGTGCAGGGGGTGATGAAAATCAA
GCAGACGGACGTCAACCCCCATCTACTCTTCGTAGCCCCCCCGTCGGTGG
AGCAGCTGGAGGCCAGGTTGAGGGGGCGCGCGACGGAGTCGGCCGAGGCC
ATCGAGACGAGGCTCTCGGCGGCACGGGCGGAAATCGAATATGGCACGGC
AGAAGGGCACTTTGAGCACGTGGTGGTGAATGATGAGTTGGAAAACGCGT
ACGCGGAGTTGAAGGCGACGTTGATTGGGTATTACCCGCATCTGGCGACC
ACAACGGTCTGA
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Synonyms
Publications