jgi.p|Nanoce1779_2|524245, mRNA_1920 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|524245
Unique Name	mRNA_1920
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1557
Alignment location	scaffold_4:352331..353887 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	524331
Track	FilteredModels2
ProteinId	524245

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:352331..353887 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524245	gene_1920	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524245	mRNA_1920-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1920	CDS_1920	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:352331..353887+
coding sequence from alignment at scaffold_4:352331..353887+

mRNA sequence

>mRNA_1920 ID=mRNA_1920|Name=jgi.p|Nanoce1779_2|524245|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp
ATGTCTGCCGCGGCCAGTCCGAATGGTCGCGTGGCCGTCATCGGCGCGGG
CATCTCTGGCCTGGCGTGTTCCCGCGAGCTCAAGGCCCAAGGGATGGACG
TGCTGCTCTTTGACACGGGCCGCTTGGCTCCTGGAGGGCGTTGCTCGAGC
AAGACGGTGGTGATAGATGGCGGGAAGACCAACGTGTTGTTTGATCATTC
AGCGCAGTTCCTGTCCGCTCCTATTTCCCCCTCCCCACCCTCCTCCCCCT
CTGCCACTTGGGACAAATGGGTGCGAGAAATGGAAGCCCAAGGAATCCTC
CGTGAATGGGATAGCAAAAGCATAGGTATCCTTGAAAGAGGTGGAAAATT
CATCCCACGTGCCTCCACCACCACCCCGCCGCAGCCCCGTGCGCTTGTAA
GCCCTCAAGGCATGCGCGCTATCCCGACTTACTTAGCTCAGGGCTTGCAC
ATTGACCGCCCCAAATGGGTGTCAAAAGCGAAATGGATCCCCCAAACCGA
CGGCACCGGTGGCTTCTGGGATCTATGGCATTACCAAGAGCAACTTGACG
CCTTTGAATACCTAGTCATTGCGCACAACGGGAAGTGCGCTGCCCGTCTT
GCCAAATCAGCAGGGGAGGCCCTGGCACCAGTTGCTCGCTTACTCGAAAC
AAAGTTTGGGGCGAGCATTCGTGGAGGAAGCACACCGAGATATATGCAGT
TATGTAGTCTGTTCGTGCTCATGGTGGTGTTGGACGAACCTGTCTCCTTG
CCTGGCAGAGAGCGGTTTGAGGGGGCTTTTGTGGAAGGAGTGTCAGAGTT
GTCTTGGGTGGCGGAGCAGGGAGGGAAGATGGGCCAGGATCTAGGAGGAG
GGACGGAGGGAGGGAGGGCGGCATGGGTTTTGGTGTCATCGCCGGGATTC
GCGGAGCAGCATAAGGTGCCTCAGGAGAATATCCCTGAAGACAAAGCGGC
GGAGGTGACTAGGCTGATGCTTCGTGCATTTCGGCAAGCCTTGGGCATGC
AGGAGAAAGGCGAAGAGGGTGCAGAGACATCACCTCTAGTACCTGCAGCA
TCAGTCCTCCAGTTATGGGGCGCGGGGAATCCGATTTCTGTCGCGGACAT
GCCCCAAGAGGCGCCCTTTGTTTTTCAGGCGGCAACAGGGTGTGGGGTAT
GCGGCGATTGGTTGCTTGCACCTTCCATTCCCGCAGCCGCCACCTCAGGA
ATCGCCCTGGCACGGCATATAGCCAGGCATCACGCGGCGAAAATAAATGG
AGACAGGAAGGTGTTGGAGGAGGATGTGGGGTTGAGGTGTGGGTTCAAAG
CGGTGCAAGGAGCGAGGCCGATTGCCTCTTTTCCCGGTGATAAGGCACCG
GTGGTGGAGGCGGTTTCGCCAAAGCCTGGGCGAGGAGAAGGGGGAGGAGG
AAGAGGAGGTGGAGGTGGTGGAAGAGGAAGAGGAGGTGGAGGTGGTGGAG
GGGGAAGAGGAGGGGGAGGGAATCATAGTGGTGGTAGGGGGGGAGGAGGG
GGGAAACCGAAAAAACATCAGCAGCCGCAGCAGCCCAAAAAGAAGACAAA
CATGTAA

protein sequence of jgi.p|Nanoce1779_2|524245

>mRNA_1920-protein ID=mRNA_1920-protein|Name=jgi.p|Nanoce1779_2|524245|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MSAAASPNGRVAVIGAGISGLACSRELKAQGMDVLLFDTGRLAPGGRCSS
KTVVIDGGKTNVLFDHSAQFLSAPISPSPPSSPSATWDKWVREMEAQGIL
REWDSKSIGILERGGKFIPRASTTTPPQPRALVSPQGMRAIPTYLAQGLH
IDRPKWVSKAKWIPQTDGTGGFWDLWHYQEQLDAFEYLVIAHNGKCAARL
AKSAGEALAPVARLLETKFGASIRGGSTPRYMQLCSLFVLMVVLDEPVSL
PGRERFEGAFVEGVSELSWVAEQGGKMGQDLGGGTEGGRAAWVLVSSPGF
AEQHKVPQENIPEDKAAEVTRLMLRAFRQALGMQEKGEEGAETSPLVPAA
SVLQLWGAGNPISVADMPQEAPFVFQAATGCGVCGDWLLAPSIPAAATSG
IALARHIARHHAAKINGDRKVLEEDVGLRCGFKAVQGARPIASFPGDKAP
VVEAVSPKPGRGEGGGGRGGGGGGRGRGGGGGGGGRGGGGNHSGGRGGGG
GKPKKHQQPQQPKKKTNM*

mRNA from alignment at scaffold_4:352331..353887+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1920 ID=mRNA_1920|Name=jgi.p|Nanoce1779_2|524245|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp|location=Sequence derived from alignment at scaffold_4:352331..353887+ (Nannochloropsis oceanica)
ATGTCTGCCGCGGCCAGTCCGAATGGTCGCGTGGCCGTCATCGGCGCGGG
CATCTCTGGCCTGGCGTGTTCCCGCGAGCTCAAGGCCCAAGGGATGGACG
TGCTGCTCTTTGACACGGGCCGCTTGGCTCCTGGAGGGCGTTGCTCGAGC
AAGACGGTGGTGATAGATGGCGGGAAGACCAACGTGTTGTTTGATCATTC
AGCGCAGTTCCTGTCCGCTCCTATTTCCCCCTCCCCACCCTCCTCCCCCT
CTGCCACTTGGGACAAATGGGTGCGAGAAATGGAAGCCCAAGGAATCCTC
CGTGAATGGGATAGCAAAAGCATAGGTATCCTTGAAAGAGGTGGAAAATT
CATCCCACGTGCCTCCACCACCACCCCGCCGCAGCCCCGTGCGCTTGTAA
GCCCTCAAGGCATGCGCGCTATCCCGACTTACTTAGCTCAGGGCTTGCAC
ATTGACCGCCCCAAATGGGTGTCAAAAGCGAAATGGATCCCCCAAACCGA
CGGCACCGGTGGCTTCTGGGATCTATGGCATTACCAAGAGCAACTTGACG
CCTTTGAATACCTAGTCATTGCGCACAACGGGAAGTGCGCTGCCCGTCTT
GCCAAATCAGCAGGGGAGGCCCTGGCACCAGTTGCTCGCTTACTCGAAAC
AAAGTTTGGGGCGAGCATTCGTGGAGGAAGCACACCGAGATATATGCAGT
TATGTAGTCTGTTCGTGCTCATGGTGGTGTTGGACGAACCTGTCTCCTTG
CCTGGCAGAGAGCGGTTTGAGGGGGCTTTTGTGGAAGGAGTGTCAGAGTT
GTCTTGGGTGGCGGAGCAGGGAGGGAAGATGGGCCAGGATCTAGGAGGAG
GGACGGAGGGAGGGAGGGCGGCATGGGTTTTGGTGTCATCGCCGGGATTC
GCGGAGCAGCATAAGGTGCCTCAGGAGAATATCCCTGAAGACAAAGCGGC
GGAGGTGACTAGGCTGATGCTTCGTGCATTTCGGCAAGCCTTGGGCATGC
AGGAGAAAGGCGAAGAGGGTGCAGAGACATCACCTCTAGTACCTGCAGCA
TCAGTCCTCCAGTTATGGGGCGCGGGGAATCCGATTTCTGTCGCGGACAT
GCCCCAAGAGGCGCCCTTTGTTTTTCAGGCGGCAACAGGGTGTGGGGTAT
GCGGCGATTGGTTGCTTGCACCTTCCATTCCCGCAGCCGCCACCTCAGGA
ATCGCCCTGGCACGGCATATAGCCAGGCATCACGCGGCGAAAATAAATGG
AGACAGGAAGGTGTTGGAGGAGGATGTGGGGTTGAGGTGTGGGTTCAAAG
CGGTGCAAGGAGCGAGGCCGATTGCCTCTTTTCCCGGTGATAAGGCACCG
GTGGTGGAGGCGGTTTCGCCAAAGCCTGGGCGAGGAGAAGGGGGAGGAGG
AAGAGGAGGTGGAGGTGGTGGAAGAGGAAGAGGAGGTGGAGGTGGTGGAG
GGGGAAGAGGAGGGGGAGGGAATCATAGTGGTGGTAGGGGGGGAGGAGGG
GGGAAACCGAAAAAACATCAGCAGCCGCAGCAGCCCAAAAAGAAGACAAA
CATGTAA

Coding sequence (CDS) from alignment at scaffold_4:352331..353887+

>mRNA_1920 ID=mRNA_1920|Name=jgi.p|Nanoce1779_2|524245|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at scaffold_4:352331..353887+ (Nannochloropsis oceanica)
ATGTCTGCCGCGGCCAGTCCGAATGGTCGCGTGGCCGTCATCGGCGCGGG
CATCTCTGGCCTGGCGTGTTCCCGCGAGCTCAAGGCCCAAGGGATGGACG
TGCTGCTCTTTGACACGGGCCGCTTGGCTCCTGGAGGGCGTTGCTCGAGC
AAGACGGTGGTGATAGATGGCGGGAAGACCAACGTGTTGTTTGATCATTC
AGCGCAGTTCCTGTCCGCTCCTATTTCCCCCTCCCCACCCTCCTCCCCCT
CTGCCACTTGGGACAAATGGGTGCGAGAAATGGAAGCCCAAGGAATCCTC
CGTGAATGGGATAGCAAAAGCATAGGTATCCTTGAAAGAGGTGGAAAATT
CATCCCACGTGCCTCCACCACCACCCCGCCGCAGCCCCGTGCGCTTGTAA
GCCCTCAAGGCATGCGCGCTATCCCGACTTACTTAGCTCAGGGCTTGCAC
ATTGACCGCCCCAAATGGGTGTCAAAAGCGAAATGGATCCCCCAAACCGA
CGGCACCGGTGGCTTCTGGGATCTATGGCATTACCAAGAGCAACTTGACG
CCTTTGAATACCTAGTCATTGCGCACAACGGGAAGTGCGCTGCCCGTCTT
GCCAAATCAGCAGGGGAGGCCCTGGCACCAGTTGCTCGCTTACTCGAAAC
AAAGTTTGGGGCGAGCATTCGTGGAGGAAGCACACCGAGATATATGCAGT
TATGTAGTCTGTTCGTGCTCATGGTGGTGTTGGACGAACCTGTCTCCTTG
CCTGGCAGAGAGCGGTTTGAGGGGGCTTTTGTGGAAGGAGTGTCAGAGTT
GTCTTGGGTGGCGGAGCAGGGAGGGAAGATGGGCCAGGATCTAGGAGGAG
GGACGGAGGGAGGGAGGGCGGCATGGGTTTTGGTGTCATCGCCGGGATTC
GCGGAGCAGCATAAGGTGCCTCAGGAGAATATCCCTGAAGACAAAGCGGC
GGAGGTGACTAGGCTGATGCTTCGTGCATTTCGGCAAGCCTTGGGCATGC
AGGAGAAAGGCGAAGAGGGTGCAGAGACATCACCTCTAGTACCTGCAGCA
TCAGTCCTCCAGTTATGGGGCGCGGGGAATCCGATTTCTGTCGCGGACAT
GCCCCAAGAGGCGCCCTTTGTTTTTCAGGCGGCAACAGGGTGTGGGGTAT
GCGGCGATTGGTTGCTTGCACCTTCCATTCCCGCAGCCGCCACCTCAGGA
ATCGCCCTGGCACGGCATATAGCCAGGCATCACGCGGCGAAAATAAATGG
AGACAGGAAGGTGTTGGAGGAGGATGTGGGGTTGAGGTGTGGGTTCAAAG
CGGTGCAAGGAGCGAGGCCGATTGCCTCTTTTCCCGGTGATAAGGCACCG
GTGGTGGAGGCGGTTTCGCCAAAGCCTGGGCGAGGAGAAGGGGGAGGAGG
AAGAGGAGGTGGAGGTGGTGGAAGAGGAAGAGGAGGTGGAGGTGGTGGAG
GGGGAAGAGGAGGGGGAGGGAATCATAGTGGTGGTAGGGGGGGAGGAGGG
GGGAAACCGAAAAAACATCAGCAGCCGCAGCAGCCCAAAAAGAAGACAAA
CATGTAA

Synonyms

Publications