jgi.p|Nanoce1779_2|578413, mRNA_1919 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578413
Unique NamemRNA_1919
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length362
Alignment locationscaffold_4:351294..352019 +

Link to JBrowse

Properties
Property NameValue
TranscriptId578499
TrackFilteredModels2
ProteinId578413
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:351294..352019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578413gene_1919Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578413mRNA_1919-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1919CDS_1919Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1919 ID=mRNA_1919|Name=jgi.p|Nanoce1779_2|578413|organism=Nannochloropsis oceanica|type=mRNA|length=362bp
CGCACCAGGTCGTCAGTGTTAACCATAAGAGGAGGGGTAGCAAAAGGACT
GACAAAGGTGGCTGGGGCCTGGCCCATGAAAGGGATGTGTGTGTTGGGCA
GGGGTGGATGGAAGAAGCGACTTGGAGGCCAGCTTGAATGGCGTTGGCGT
TGGCGTTGGGAACGTGCGTTGTCAGCGGGTTTGGACGTTGGGTTTGGACC
TTACTTGTCCTAAAGCAAAATACCACAATCTCGTCGCAGCACGCAAGACA
CAGGCCTGTATCATGTGTGGATATTGTAGGGATTAGGATCAGGGGAGCGC
ATAAGAACCTCTGGGTGCCTTTGGCTAGAGATCGAGGGAGGACGCAGTAG
CCCTAGCAAAGC
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protein sequence of jgi.p|Nanoce1779_2|578413

>mRNA_1919-protein ID=mRNA_1919-protein|Name=jgi.p|Nanoce1779_2|578413|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MALALALGTCVVSGFGRWVWTLLVLKQNTTISSQHARHRPVSCVDIVGIR
IRGAHKNLWVPLARDRGRTQ*
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mRNA from alignment at scaffold_4:351294..352019+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1919 ID=mRNA_1919|Name=jgi.p|Nanoce1779_2|578413|organism=Nannochloropsis oceanica|type=mRNA|length=726bp|location=Sequence derived from alignment at scaffold_4:351294..352019+ (Nannochloropsis oceanica)
CGCACCAGGTCGTCAGTGTTAACCATAAGAGGAGGGGTAGCAAAAGGACT
GACAAAGGTGGCTGGGGCCTGGCCCATGAAAGGGCTGCGTATGGTGTGGG
GAGGGGGGGGTGAGGAATGGGGGAGGGGGGGGTGAGGAATGGGAGAGGTG
AGTACTGGGGTGGAGAAGGACGTAGAGATCTCACGAAGTGTACAGAAGCG
TCCATTTCAGGGCTTAAGATGGTGCACGCAAGCATATTTTGGGAATTTAT
TGCGAGAATCTGGTAAATGGGCTCCTACATCGGCGCGGCGCGTTGGTGGG
TGGGGGCGCGCTTGCTTCCTATGCATGCATCTCACAGGGCCCATCTGTGC
TTTATTCGCGGTCTTGGTGGCTTCTTGGCCACCTCGTCGAGACTATTGAC
CATTGAAACTCAGCATTCATGTCAGCAGTGATAATTTGGAGCTCATACAT
GTGTGTGTTGGGCAGGGGTGGATGGAAGAAGCGACTTGGAGGCCAGCTTG
AATGGCGTTGGCGTTGGCGTTGGGAACGTGCGTTGTCAGCGGGTTTGGAC
GTTGGGTTTGGACCTTACTTGTCCTAAAGCAAAATACCACAATCTCGTCG
CAGCACGCAAGACACAGGCCTGTATCATGTGTGGATATTGTAGGGATTAG
GATCAGGGGAGCGCATAAGAACCTCTGGGTGCCTTTGGCTAGAGATCGAG
GGAGGACGCAGTAGCCCTAGCAAAGC
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Coding sequence (CDS) from alignment at scaffold_4:351294..352019+

>mRNA_1919 ID=mRNA_1919|Name=jgi.p|Nanoce1779_2|578413|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_4:351294..352019+ (Nannochloropsis oceanica)
ATGGCGTTGGCGTTGGCGTTGGGAACGTGCGTTGTCAGCGGGTTTGGACG
TTGGGTTTGGACCTTACTTGTCCTAAAGCAAAATACCACAATCTCGTCGC
AGCACGCAAGACACAGGCCTGTATCATGTGTGGATATTGTAGGGATTAGG
ATCAGGGGAGCGCATAAGAACCTCTGGGTGCCTTTGGCTAGAGATCGAGG
GAGGACGCAGTAG
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Synonyms
Publications