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Properties
Property Name | Value |
TranscriptId | 578497 |
Track | FilteredModels2 |
ProteinId | 578411 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_4 | supercontig | scaffold_4:348796..351380 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1918 ID=mRNA_1918|Name=jgi.p|Nanoce1779_2|578411|organism=Nannochloropsis oceanica|type=mRNA|length=2458bp CAGCCCTTTCATGGGCCAGGCCCCAGCCACCTTTGTCAGTCCTTTTGCTA CCCCTCCTCTTATGGTTAACACTGACGACCTGGTGCGCAATTGGCTGACG GATGAGAACACTCACCAGCTTTGCCACAAACGCCATTGCCATGAAGCAGT GCCGCGACGCCGGCGGAGCAGCCACTTTCGCCGTCATTCCCACGGTGTGG ATCAACTGGCATCATTGCTGGATGAAAATGTAACTCATTCGGTCAATGCG GATCTGCATAAACCCGATGAGGAGGAATCGCATGATTCGGAGCCTGCGTC GCCGGATGTGACCCTTGTGACCGTCCGGAGGCAGGATGGAGTGGAGGTGG TGATTTCGCGTGACATTGCCTATGGCACAGCTGTGCGTCTGGTCAATTTA CACGACCAAGAGGAAGTAGTATTTACGTTTAGCGATCGTTCTATGGTACG GCTGCCTGCTGACGCCATTATTGCCAAGGCGGGGATGGGCGAGATGCTAT ATGCATTGGACGGGGGTCATTCTCGGGGCCGGTCGCGGAGCCAGGACCGG GGCAACATCGGCGGAAACTCTAGCGGTGCCGAGATTGTGAGCACGAATGA GGTCCTTCAGGCACCTGTTTTCTTTCCTCCGCATCGTTTCGATGTGCACC ATGAGCTGGTCTGCCGTGTCGAGAGAGCATTGGCGCCTGCCCCTCCTACC ACACGAGGAGAGCTCCAGATCGTGCTGCCGCAGATGGTGAATGATAGGGA AGTTCATTTTGCCCTCATCCTCGTCAATATGGCGTGCTGGCACCGGGATC TAACCGGACTAACCCTGCTCTTACTCGGGGTCATGCTTGTTGCGGAGGCC TTCAAACGACACGCTGCAGAGGTAGCACAGGGGCAAGGAGGACAACAGCG CCACCGGCAGCTCTTGAGGGCAGTGGTCTGGGATTTGGAACTGATTGCAG AACGATGCATGTGCCGACAAAAGCGTTTCACTCGTACCTCCACTACGATG ATGAGGACGAGGACGAGGACAACAACGACGACTACCACCACAGTGCTGCG GCGGAAGAGCGTGGTGCTGGTGGAAGAGGAGCGGGCGAGGACGAGCGGGG CGATAATAATCAACGGGCAGGCGGAGAAGGAAATTGTTATGAGCGATGAC CAGACGGCGTTGGCAGATGAAGAAGCATCAGCAGGAAAAACAGCACCACC ATCGTCACCATCACCATCACCTGCAGGAGCAAGGGCAAGCTCTGCCTCTG CAGCTGCTACGCAAGCCGAAGCGAGTGAGAGCGTGCGGCGACCTCAACGA AAAGTTTCGGATGTCATTATCGCCACTTCACGTCGCTCGTTATCCATGAT AGCTACTGCGGCCTTGATGCAGGAAGTTGAAGAAGAGGAGGAGTTGAAGG AAGAGGTGGTGGATGAGGAAGAGGGGGTCCTGGCGGCCACGACGACTAAA ACCAAGATAATGGCTGCTGCTGATGCGATGGCGGTTCGAAGGAAGGAGAG CATGGATGTCATTGCTGTTCTGGCTGCATTGGGAAGACCAGCAGTGCCTT TAAGGTATCTGATGGTGACGGGCAATAATGTGCAGAAAGCACAAGAGAAG TGGGAGGCGACCCTGAAATGGCGGGCGGCTTACCGGGCAGACACGATTTT GGAAGCACCACACACGCAATATCATTTTATTAAGAAATACTTCCCGCAAT TCATGGCTGGGAGAAGTAGGAGTGGAAATCCGGTGTACTATGAAATGAAT GCGAAGATCGACGCACGGACCCTCGTGTCGCAAGGGGTGGACGTGGACGA GATGATCTGGCACTATGTTTGGATCAATGAGTTTATCTACTCTCGCTGGG TGCCTGACCCCGATGGACAAATTATCACCGTTGTGGATATTTCTGGTCTC TCTATGAGCGGCATGTCGACCCGCTCAATCGAATTCATCTCCAGGTCCTT AACTCTGATTCAAGCCCATTATCCTGCCCGGGCTCAGGTTATTTTGTTGG TAAACGCCCCGTTTTTCTTTTCTTACATCTGGAAGATTGTCAAGGGGGCG GCGGATGAATATACAAGCAATACATTGAAGGTGTTTAGCACCGCGCAGAC ATTTTCGGCTTTGTGTGAATATATCGAGCCAGATCAGATTCCTGTAGAAT ATGGAGGAAACTTGAGGTATGCCCCACTGGAAGGCACGCAGGAGTGGGCG AAGCACCAGGAGATGCCGCATAGCGTGAGGTGGACCAGTCCTTTGGAGCG AGAGATGGAGGAGCATGTACATCGTGTCATAGCGGCAAGAAAGGGTGGTG CGATGGGGAAGGAGAATGGAGCAGAAGAGGAAGAGGTGAGCGCAGGCAGC GCAGCGGTGGGGGCGGCGTAAAATAGTTGGGTAGTAAAATGGTAGGGAAT GCAGAGTATAAAAATGATGTGTTGAATGCAGACAACCAAACCAATTTGAA TACATGTG back to topprotein sequence of jgi.p|Nanoce1779_2|578411 >mRNA_1918-protein ID=mRNA_1918-protein|Name=jgi.p|Nanoce1779_2|578411|organism=Nannochloropsis oceanica|type=polypeptide|length=787bp MGQAPATFVSPFATPPLMVNTDDLVRNWLTDENTHQLCHKRHCHEAVPRR RRSSHFRRHSHGVDQLASLLDENVTHSVNADLHKPDEEESHDSEPASPDV TLVTVRRQDGVEVVISRDIAYGTAVRLVNLHDQEEVVFTFSDRSMVRLPA DAIIAKAGMGEMLYALDGGHSRGRSRSQDRGNIGGNSSGAEIVSTNEVLQ APVFFPPHRFDVHHELVCRVERALAPAPPTTRGELQIVLPQMVNDREVHF ALILVNMACWHRDLTGLTLLLLGVMLVAEAFKRHAAEVAQGQGGQQRHRQ LLRAVVWDLELIAERCMCRQKRFTRTSTTMMRTRTRTTTTTTTTVLRRKS VVLVEEERARTSGAIIINGQAEKEIVMSDDQTALADEEASAGKTAPPSSP SPSPAGARASSASAAATQAEASESVRRPQRKVSDVIIATSRRSLSMIATA ALMQEVEEEEELKEEVVDEEEGVLAATTTKTKIMAAADAMAVRRKESMDV IAVLAALGRPAVPLRYLMVTGNNVQKAQEKWEATLKWRAAYRADTILEAP HTQYHFIKKYFPQFMAGRSRSGNPVYYEMNAKIDARTLVSQGVDVDEMIW HYVWINEFIYSRWVPDPDGQIITVVDISGLSMSGMSTRSIEFISRSLTLI QAHYPARAQVILLVNAPFFFSYIWKIVKGAADEYTSNTLKVFSTAQTFSA LCEYIEPDQIPVEYGGNLRYAPLEGTQEWAKHQEMPHSVRWTSPLEREME EHVHRVIAARKGGAMGKENGAEEEEVSAGSAAVGAA* back to topmRNA from alignment at scaffold_4:348796..351380- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1918 ID=mRNA_1918|Name=jgi.p|Nanoce1779_2|578411|organism=Nannochloropsis oceanica|type=mRNA|length=2585bp|location=Sequence derived from alignment at scaffold_4:348796..351380- (Nannochloropsis oceanica) CAGCCCTTTCATGGGCCAGGCCCCAGCCACCTTTGTCAGTCCTTTTGCTA
CCCCTCCTCTTATGGTTAACACTGACGACCTGGTGCGCAATTGGCTGACG
GATGAGAACACTCACCAGCTTTGCCACAAACGCCATTGCCATGAAGCAGT
GCCGCGACGCCGGCGGAGCAGCCACTTTCGCCGTCATTCCCACGGTGTGG
ATCAACTGGCATCATTGCTGGATGAAAATGTAACTCATTCGGTCAATGCG
GATCTGCATAAACCCGATGAGGAGGAATCGCATGATTCGGAGCCTGCGTC
GCCGGATGTGACCCTTGTGACCGTCCGGAGGCAGGATGGAGTGGAGGTGG
TGATTTCGCGTGACATTGCCTATGGCACAGCTGTGCGTCTGGTCAATTTA
CACGACCAAGAGGAAGTAGTATTTACGTTTAGCGATCGTTCTATGGTACG
GCTGCCTGCTGACGCCATTATTGCCAAGGCGGGGATGGGCGAGATGCTAT
ATGCATTGGACGGGGGTCATTCTCGGGGCCGGTCGCGGAGCCAGGACCGG
GGCAACATCGGCGGAAACTCTAGCGGTGCCGAGATTGTGAGCACGAATGA
GGTCCTTCAGGCACCTGTTTTCTTTCCTCCGCATCGTTTCGATGTGCACC
ATGAGCTGGTCTGCCGTGTCGAGAGAGCATTGGCGCCTGCCCCTCCTACC
ACACGAGGAGAGCTCCAGATCGTGCTGCCGCAGATGGTGAATGATAGGGA
AGTTCATTTTGCCCTCATCCTCGTCAATATGGCGTGCTGGCACCGGGATC
TAACCGGACTAACCCTGCTCTTACTCGGGGTCATGCTTGTTGCGGAGGCC
TTCAAACGACACGCTGCAGAGGTAGCACAGGGGCAAGGAGGACAACAGCG
CCACCGGCAGCTCTTGAGGGCAGTGGTCTGGGATTTGGAACTGATTGCAG
AACGATGCATGTGCCGACAAAAGCGTTTCACTCGTACCTCCACTACGATG
ATGAGGACGAGGACGAGGACAACAACGACGACTACCACCACAGTGCTGCG
GCGGAAGAGCGTGGTGCTGGTGGAAGAGGAGCGGGCGAGGACGAGCGGGG
CGATAATAATCAACGGGCAGGCGGAGAAGGAAATTGTTATGAGCGATGAC
CAGACGGCGTTGGCAGATGAAGAAGCATCAGCAGGAAAAACAGCACCACC
ATCGTCACCATCACCATCACCTGCAGGAGCAAGGGCAAGCTCTGCCTCTG
CAGCTGCTACGCAAGCCGAAGCGAGTGAGAGCGTGCGGCGACCTCAACGA
AAAGTTTCGGATGTCATTATCGCCACTTCACGTCGCTCGTTATCCATGAT
AGCTACTGCGGCCTTGATGCAGGAAGTTGAAGAAGAGGAGGAGTTGAAGG
AAGAGGTGGTGGATGAGGAAGAGGGGGTCCTGGCGGCCACGACGACTAAA
ACCAAGATAATGGCTGCTGCTGATGCGATGGCGGTTCGAAGGAAGGAGAG
CATGGATGTCATTGCTGTTCTGGCTGCATTGGGAAGACCAGCAGTGCCTT
TAAGGTATCTGATGGTGACGGGCAATAATGTGCAGAAAGCACAAGAGAAG
TGGGAGGCGACCCTGAAATGGCGGGCGGCTTACCGGGCAGACACGATTTT
GGAAGCACCACACACGCAATATCATTTTATTAAGAAATACTTCCCGCAAT
TCATGGCTGGGAGAAGTAGGAGTGGAAATCCGGTGGTACGTTGGAGGGAG
GCTTGGTTTGTGTGTATATCTGTGTGCGTGTGCCTGTCACATTTCGCAGC
GAATATACTTATATGTCTTCCTTCACTCTCTCACTCACTTCATCCTTCTT
TCTACTCCATAGTACTATGAAATGAATGCGAAGATCGACGCACGGACCCT
CGTGTCGCAAGGGGTGGACGTGGACGAGATGATCTGGCACTATGTTTGGA
TCAATGAGTTTATCTACTCTCGCTGGGTGCCTGACCCCGATGGACAAATT
ATCACCGTTGTGGATATTTCTGGTCTCTCTATGAGCGGCATGTCGACCCG
CTCAATCGAATTCATCTCCAGGTCCTTAACTCTGATTCAAGCCCATTATC
CTGCCCGGGCTCAGGTTATTTTGTTGGTAAACGCCCCGTTTTTCTTTTCT
TACATCTGGAAGATTGTCAAGGGGGCGGCGGATGAATATACAAGCAATAC
ATTGAAGGTGTTTAGCACCGCGCAGACATTTTCGGCTTTGTGTGAATATA
TCGAGCCAGATCAGATTCCTGTAGAATATGGAGGAAACTTGAGGTATGCC
CCACTGGAAGGCACGCAGGAGTGGGCGAAGCACCAGGAGATGCCGCATAG
CGTGAGGTGGACCAGTCCTTTGGAGCGAGAGATGGAGGAGCATGTACATC
GTGTCATAGCGGCAAGAAAGGGTGGTGCGATGGGGAAGGAGAATGGAGCA
GAAGAGGAAGAGGTGAGCGCAGGCAGCGCAGCGGTGGGGGCGGCGTAAAA
TAGTTGGGTAGTAAAATGGTAGGGAATGCAGAGTATAAAAATGATGTGTT
GAATGCAGACAACCAAACCAATTTGAATACATGTG back to topCoding sequence (CDS) from alignment at scaffold_4:348796..351380- >mRNA_1918 ID=mRNA_1918|Name=jgi.p|Nanoce1779_2|578411|organism=Nannochloropsis oceanica|type=CDS|length=4722bp|location=Sequence derived from alignment at scaffold_4:348796..351380- (Nannochloropsis oceanica) TACTATGAAATGAATGCGAAGATCGACGCACGGACCCTCGTGTCGCAAGG GGTGGACGTGGACGAGATGATCTGGCACTATGTTTGGATCAATGAGTTTA TCTACTCTCGCTGGGTGCCTGACCCCGATGGACAAATTATCACCGTTGTG GATATTTCTGGTCTCTCTATGAGCGGCATGTCGACCCGCTCAATCGAATT CATCTCCAGGTCCTTAACTCTGATTCAAGCCCATTATCCTGCCCGGGCTC AGGTTATTTTGTTGGTAAACGCCCCGTTTTTCTTTTCTTACATCTGGAAG ATTGTCAAGGGGGCGGCGGATGAATATACAAGCAATACATTGAAGGTGTT TAGCACCGCGCAGACATTTTCGGCTTTGTGTGAATATATCGAGCCAGATC AGATTCCTGTAGAATATGGAGGAAACTTGAGGTATGCCCCACTGGAAGGC ACGCAGGAGTGGGCGAAGCACCAGGAGATGCCGCATAGCGTGAGGTGGAC CAGTCCTTTGGAGCGAGAGATGGAGGAGCATGTACATCGTGTCATAGCGG CAAGAAAGGGTGGTGCGATGGGGAAGGAGAATGGAGCAGAAGAGGAAGAG GTGAGCGCAGGCAGCGCAGCGGTGGGGGCGGCGTAAATGGGCCAGGCCCC AGCCACCTTTGTCAGTCCTTTTGCTACCCCTCCTCTTATGGTTAACACTG ACGACCTGGTGCGCAATTGGCTGACGGATGAGAACACTCACCAGCTTTGC CACAAACGCCATTGCCATGAAGCAGTGCCGCGACGCCGGCGGAGCAGCCA CTTTCGCCGTCATTCCCACGGTGTGGATCAACTGGCATCATTGCTGGATG AAAATGTAACTCATTCGGTCAATGCGGATCTGCATAAACCCGATGAGGAG GAATCGCATGATTCGGAGCCTGCGTCGCCGGATGTGACCCTTGTGACCGT CCGGAGGCAGGATGGAGTGGAGGTGGTGATTTCGCGTGACATTGCCTATG GCACAGCTGTGCGTCTGGTCAATTTACACGACCAAGAGGAAGTAGTATTT ACGTTTAGCGATCGTTCTATGGTACGGCTGCCTGCTGACGCCATTATTGC CAAGGCGGGGATGGGCGAGATGCTATATGCATTGGACGGGGGTCATTCTC GGGGCCGGTCGCGGAGCCAGGACCGGGGCAACATCGGCGGAAACTCTAGC GGTGCCGAGATTGTGAGCACGAATGAGGTCCTTCAGGCACCTGTTTTCTT TCCTCCGCATCGTTTCGATGTGCACCATGAGCTGGTCTGCCGTGTCGAGA GAGCATTGGCGCCTGCCCCTCCTACCACACGAGGAGAGCTCCAGATCGTG CTGCCGCAGATGGTGAATGATAGGGAAGTTCATTTTGCCCTCATCCTCGT CAATATGGCGTGCTGGCACCGGGATCTAACCGGACTAACCCTGCTCTTAC TCGGGGTCATGCTTGTTGCGGAGGCCTTCAAACGACACGCTGCAGAGGTA GCACAGGGGCAAGGAGGACAACAGCGCCACCGGCAGCTCTTGAGGGCAGT GGTCTGGGATTTGGAACTGATTGCAGAACGATGCATGTGCCGACAAAAGC GTTTCACTCGTACCTCCACTACGATGATGAGGACGAGGACGAGGACAACA ACGACGACTACCACCACAGTGCTGCGGCGGAAGAGCGTGGTGCTGGTGGA AGAGGAGCGGGCGAGGACGAGCGGGGCGATAATAATCAACGGGCAGGCGG AGAAGGAAATTGTTATGAGCGATGACCAGACGGCGTTGGCAGATGAAGAA GCATCAGCAGGAAAAACAGCACCACCATCGTCACCATCACCATCACCTGC AGGAGCAAGGGCAAGCTCTGCCTCTGCAGCTGCTACGCAAGCCGAAGCGA GTGAGAGCGTGCGGCGACCTCAACGAAAAGTTTCGGATGTCATTATCGCC ACTTCACGTCGCTCGTTATCCATGATAGCTACTGCGGCCTTGATGCAGGA AGTTGAAGAAGAGGAGGAGTTGAAGGAAGAGGTGGTGGATGAGGAAGAGG GGGTCCTGGCGGCCACGACGACTAAAACCAAGATAATGGCTGCTGCTGAT GCGATGGCGGTTCGAAGGAAGGAGAGCATGGATGTCATTGCTGTTCTGGC TGCATTGGGAAGACCAGCAGTGCCTTTAAGGTATCTGATGGTGACGGGCA ATAATGTGCAGAAAGCACAAGAGAAGTGGGAGGCGACCCTGAAATGGCGG GCGGCTTACCGGGCAGACACGATTTTGGAAGCACCACACACGCAATATCA TTTTATTAAGAAATACTTCCCGCAATTCATGGCTGGGAGAAGTAGGAGTG GAAATCCGGTGTACTATGAAATGAATGCGAAGATCGACGCACGGACCCTC GTGTCGCAAGGGGTGGACGTGGACGAGATGATCTGGCACTATGTTTGGAT CAATGAGTTTATCTACTCTCGCTGGGTGCCTGACCCCGATGGACAAATTA TCACCGTTGTGGATATTTCTGGTCTCTCTATGAGCGGCATGTCGACCCGC TCAATCGAATTCATCTCCAGGTCCTTAACTCTGATTCAAGCCCATTATCC TGCCCGGGCTCAGGTTATTTTGTTGGTAAACGCCCCGTTTTTCTTTTCTT ACATCTGGAAGATTGTCAAGGGGGCGGCGGATGAATATACAAGCAATACA TTGAAGGTGTTTAGCACCGCGCAGACATTTTCGGCTTTGTGTGAATATAT CGAGCCAGATCAGATTCCTGTAGAATATGGAGGAAACTTGAGGTATGCCC CACTGGAAGGCACGCAGGAGTGGGCGAAGCACCAGGAGATGCCGCATAGC GTGAGGTGGACCAGTCCTTTGGAGCGAGAGATGGAGGAGCATGTACATCG TGTCATAGCGGCAAGAAAGGGTGGTGCGATGGGGAAGGAGAATGGAGCAG AAGAGGAAGAGGTGAGCGCAGGCAGCGCAGCGGTGGGGGCGGCGTAAATG GGCCAGGCCCCAGCCACCTTTGTCAGTCCTTTTGCTACCCCTCCTCTTAT GGTTAACACTGACGACCTGGTGCGCAATTGGCTGACGGATGAGAACACTC ACCAGCTTTGCCACAAACGCCATTGCCATGAAGCAGTGCCGCGACGCCGG CGGAGCAGCCACTTTCGCCGTCATTCCCACGGTGTGGATCAACTGGCATC ATTGCTGGATGAAAATGTAACTCATTCGGTCAATGCGGATCTGCATAAAC CCGATGAGGAGGAATCGCATGATTCGGAGCCTGCGTCGCCGGATGTGACC CTTGTGACCGTCCGGAGGCAGGATGGAGTGGAGGTGGTGATTTCGCGTGA CATTGCCTATGGCACAGCTGTGCGTCTGGTCAATTTACACGACCAAGAGG AAGTAGTATTTACGTTTAGCGATCGTTCTATGGTACGGCTGCCTGCTGAC GCCATTATTGCCAAGGCGGGGATGGGCGAGATGCTATATGCATTGGACGG GGGTCATTCTCGGGGCCGGTCGCGGAGCCAGGACCGGGGCAACATCGGCG GAAACTCTAGCGGTGCCGAGATTGTGAGCACGAATGAGGTCCTTCAGGCA CCTGTTTTCTTTCCTCCGCATCGTTTCGATGTGCACCATGAGCTGGTCTG CCGTGTCGAGAGAGCATTGGCGCCTGCCCCTCCTACCACACGAGGAGAGC TCCAGATCGTGCTGCCGCAGATGGTGAATGATAGGGAAGTTCATTTTGCC CTCATCCTCGTCAATATGGCGTGCTGGCACCGGGATCTAACCGGACTAAC CCTGCTCTTACTCGGGGTCATGCTTGTTGCGGAGGCCTTCAAACGACACG CTGCAGAGGTAGCACAGGGGCAAGGAGGACAACAGCGCCACCGGCAGCTC TTGAGGGCAGTGGTCTGGGATTTGGAACTGATTGCAGAACGATGCATGTG CCGACAAAAGCGTTTCACTCGTACCTCCACTACGATGATGAGGACGAGGA CGAGGACAACAACGACGACTACCACCACAGTGCTGCGGCGGAAGAGCGTG GTGCTGGTGGAAGAGGAGCGGGCGAGGACGAGCGGGGCGATAATAATCAA CGGGCAGGCGGAGAAGGAAATTGTTATGAGCGATGACCAGACGGCGTTGG CAGATGAAGAAGCATCAGCAGGAAAAACAGCACCACCATCGTCACCATCA CCATCACCTGCAGGAGCAAGGGCAAGCTCTGCCTCTGCAGCTGCTACGCA AGCCGAAGCGAGTGAGAGCGTGCGGCGACCTCAACGAAAAGTTTCGGATG TCATTATCGCCACTTCACGTCGCTCGTTATCCATGATAGCTACTGCGGCC TTGATGCAGGAAGTTGAAGAAGAGGAGGAGTTGAAGGAAGAGGTGGTGGA TGAGGAAGAGGGGGTCCTGGCGGCCACGACGACTAAAACCAAGATAATGG CTGCTGCTGATGCGATGGCGGTTCGAAGGAAGGAGAGCATGGATGTCATT GCTGTTCTGGCTGCATTGGGAAGACCAGCAGTGCCTTTAAGGTATCTGAT GGTGACGGGCAATAATGTGCAGAAAGCACAAGAGAAGTGGGAGGCGACCC TGAAATGGCGGGCGGCTTACCGGGCAGACACGATTTTGGAAGCACCACAC ACGCAATATCATTTTATTAAGAAATACTTCCCGCAATTCATGGCTGGGAG AAGTAGGAGTGGAAATCCGGTG back to top
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