jgi.p|Nanoce1779_2|578383, mRNA_1911 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578383
Unique Name	mRNA_1911
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	714
Alignment location	scaffold_4:329565..330525 +

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Properties


Property Name	Value
TranscriptId	578469
Track	FilteredModels2
ProteinId	578383

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:329565..330525 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578383	gene_1911	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578383	mRNA_1911-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1911	CDS_1911	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:329565..330525+
coding sequence from alignment at scaffold_4:329565..330525+

mRNA sequence

>mRNA_1911 ID=mRNA_1911|Name=jgi.p|Nanoce1779_2|578383|organism=Nannochloropsis oceanica|type=mRNA|length=714bp
CAACAGAACGGGGCCGAATAATGCCACCGACTACGTACTACGTGGAGAAC
CAGACGTGGCACATTTGGAGAGAATGCGCGCTCCTGATTCCCATGCTCAG
CACGGCCCTTCTCGTTGTGGCTGTCTTCTCACGCGACTGGAGCCGCTTGA
CTACTCACACGACGCTCTGGAGCGAAGTCCTAATCGACGACTTTTGGGGC
CTCTGGCAATGGAGCTCCGTAATGACCTCGGCCTCCTCAACCGTCCGTCT
CTCCTTCGATTACGACTGGTGCCAGCGTAGTGATACCGTTGAGCAATGCC
ATCTACTTCTCGCCGCCCGTGGCCTGGCAATCGCCACTATCGTCTTAGAA
GCCGCTGCTGTCATAAGCGCGTTAGTCGTCGAATGCCGAACGGCCCGCCG
GGGGGGCTTCTCAGCTGAATATGCTTGTGTGACATTATCGACCTTTCACC
TGGTATGTGCAATTTTGATGTTAGTGGTTTGGTCGAGCGTGCAAGATGAG
TTGAGGGCACAAGACCTAACTTCAGGAAGGAGTAAGATCCACTTTGGCTT
TTCGTGGTGGTTCTTCTTAGTGTCAGCGGCCTCGACTGTCTTGACTGATT
TCTGCGTGATCAAGGAGTTGGCACACAAATCGGCCTATCGCACGATTAGT
CCTCCAGGGAAGACGGATTTGAGGAGTCGGAATGCACGGTGATCGAGAAG
AGGGAGGGAGGGAG

protein sequence of jgi.p|Nanoce1779_2|578383

>mRNA_1911-protein ID=mRNA_1911-protein|Name=jgi.p|Nanoce1779_2|578383|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MPPTTYYVENQTWHIWRECALLIPMLSTALLVVAVFSRDWSRLTTHTTLW
SEVLIDDFWGLWQWSSVMTSASSTVRLSFDYDWCQRSDTVEQCHLLLAAR
GLAIATIVLEAAAVISALVVECRTARRGGFSAEYACVTLSTFHLVCAILM
LVVWSSVQDELRAQDLTSGRSKIHFGFSWWFFLVSAASTVLTDFCVIKEL
AHKSAYRTISPPGKTDLRSRNAR*

mRNA from alignment at scaffold_4:329565..330525+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1911 ID=mRNA_1911|Name=jgi.p|Nanoce1779_2|578383|organism=Nannochloropsis oceanica|type=mRNA|length=961bp|location=Sequence derived from alignment at scaffold_4:329565..330525+ (Nannochloropsis oceanica)
CAACAGAACGGGGCCGAATAATGCCACCGACTACGTACTACGTGGAGAAC
CAGACGTGGCACATTTGGAGAGAATGCGGTAAGCAAAGTCACTGACAGGA
GATTGTGTCAACCATGACCCAAAAGGCCGCCTCCTTATGCTAATCATGCT
TACATACCACACGACGCGCAGCGCTCCTGATTCCCATGCTCAGCACGGCC
CTTCTCGTTGTGGCTGTCTTCTCACGCGACTGGAGCCGCTTGACTACTCA
CACGACGCTCTGGTACGTAGACCTAAGTCGTCATGTGTGATGTCGTGCCG
CCTCCCCCACCAAAGGCTGGACTTGCCCTCCTCCTTTCCCCCTTGAAATT
TACTTCTGGACTATTGTTTCCTTCTCCGTCACAACAAGCAAGCTCAACTC
CCTCTCAACGACACAGGAGCGAAGTCCTAATCGACGACTTTTGGGGCCTC
TGGCAATGGAGCTCCGTAATGACCTCGGCCTCCTCAACCGTCCGTCTCTC
CTTCGATTACGACTGGTGCCAGCGTAGTGATACCGTTGAGCAATGCCATC
TACTTCTCGCCGCCCGTGGCCTGGCAATCGCCACTATCGTCTTAGAAGCC
GCTGCTGTCATAAGCGCGTTAGTCGTCGAATGCCGAACGGCCCGCCGGGG
GGGCTTCTCAGCTGAATATGCTTGTGTGACATTATCGACCTTTCACCTGG
TATGTGCAATTTTGATGTTAGTGGTTTGGTCGAGCGTGCAAGATGAGTTG
AGGGCACAAGACCTAACTTCAGGAAGGAGTAAGATCCACTTTGGCTTTTC
GTGGTGGTTCTTCTTAGTGTCAGCGGCCTCGACTGTCTTGACTGATTTCT
GCGTGATCAAGGAGTTGGCACACAAATCGGCCTATCGCACGATTAGTCCT
CCAGGGAAGACGGATTTGAGGAGTCGGAATGCACGGTGATCGAGAAGAGG
GAGGGAGGGAG

Coding sequence (CDS) from alignment at scaffold_4:329565..330525+

>mRNA_1911 ID=mRNA_1911|Name=jgi.p|Nanoce1779_2|578383|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_4:329565..330525+ (Nannochloropsis oceanica)
ATGCCACCGACTACGTACTACGTGGAGAACCAGACGTGGCACATTTGGAG
AGAATGCGCGCTCCTGATTCCCATGCTCAGCACGGCCCTTCTCGTTGTGG
CTGTCTTCTCACGCGACTGGAGCCGCTTGACTACTCACACGACGCTCTGG
AGCGAAGTCCTAATCGACGACTTTTGGGGCCTCTGGCAATGGAGCTCCGT
AATGACCTCGGCCTCCTCAACCGTCCGTCTCTCCTTCGATTACGACTGGT
GCCAGCGTAGTGATACCGTTGAGCAATGCCATCTACTTCTCGCCGCCCGT
GGCCTGGCAATCGCCACTATCGTCTTAGAAGCCGCTGCTGTCATAAGCGC
GTTAGTCGTCGAATGCCGAACGGCCCGCCGGGGGGGCTTCTCAGCTGAAT
ATGCTTGTGTGACATTATCGACCTTTCACCTGGTATGTGCAATTTTGATG
TTAGTGGTTTGGTCGAGCGTGCAAGATGAGTTGAGGGCACAAGACCTAAC
TTCAGGAAGGAGTAAGATCCACTTTGGCTTTTCGTGGTGGTTCTTCTTAG
TGTCAGCGGCCTCGACTGTCTTGACTGATTTCTGCGTGATCAAGGAGTTG
GCACACAAATCGGCCTATCGCACGATTAGTCCTCCAGGGAAGACGGATTT
GAGGAGTCGGAATGCACGGTGAATGCCACCGACTACGTACTACGTGGAGA
ACCAGACGTGGCACATTTGGAGAGAATGCGCGCTCCTGATTCCCATGCTC
AGCACGGCCCTTCTCGTTGTGGCTGTCTTCTCACGCGACTGGAGCCGCTT
GACTACTCACACGACGCTCTGGAGCGAAGTCCTAATCGACGACTTTTGGG
GCCTCTGGCAATGGAGCTCCGTAATGACCTCGGCCTCCTCAACCGTCCGT
CTCTCCTTCGATTACGACTGGTGCCAGCGTAGTGATACCGTTGAGCAATG
CCATCTACTTCTCGCCGCCCGTGGCCTGGCAATCGCCACTATCGTCTTAG
AAGCCGCTGCTGTCATAAGCGCGTTAGTCGTCGAATGCCGAACGGCCCGC
CGGGGGGGCTTCTCAGCTGAATATGCTTGTGTGACATTATCGACCTTTCA
CCTGGTATGTGCAATTTTGATGTTAGTGGTTTGGTCGAGCGTGCAAGATG
AGTTGAGGGCACAAGACCTAACTTCAGGAAGGAGTAAGATCCACTTTGGC
TTTTCGTGGTGGTTCTTCTTAGTGTCAGCGGCCTCGACTGTCTTGACTGA
TTTCTGCGTGATCAAGGAGTTGGCACACAAATCGGCCTATCGCACGATTA
GTCCTCCAGGGAAGACGGATTTGAGGAGTCGGAATGCACGGTGAATGCCA
CCGACTACGTACTACGTGGAGAACCAGACGTGGCACATTTGGAGAGAATG
CGCGCTCCTGATTCCCATGCTCAGCACGGCCCTTCTCGTTGTGGCTGTCT
TCTCACGCGACTGGAGCCGCTTGACTACTCACACGACGCTCTGGAGCGAA
GTCCTAATCGACGACTTTTGGGGCCTCTGGCAATGGAGCTCCGTAATGAC
CTCGGCCTCCTCAACCGTCCGTCTCTCCTTCGATTACGACTGGTGCCAGC
GTAGTGATACCGTTGAGCAATGCCATCTACTTCTCGCCGCCCGTGGCCTG
GCAATCGCCACTATCGTCTTAGAAGCCGCTGCTGTCATAAGCGCGTTAGT
CGTCGAATGCCGAACGGCCCGCCGGGGGGGCTTCTCAGCTGAATATGCTT
GTGTGACATTATCGACCTTTCACCTGGTATGTGCAATTTTGATGTTAGTG
GTTTGGTCGAGCGTGCAAGATGAGTTGAGGGCACAAGACCTAACTTCAGG
AAGGAGTAAGATCCACTTTGGCTTTTCGTGGTGGTTCTTCTTAGTGTCAG
CGGCCTCGACTGTCTTGACTGATTTCTGCGTGATCAAGGAGTTGGCACAC
AAATCGGCCTATCGCACGATTAGTCCTCCAGGGAAGACGGATTTGAGGAG
TCGGAATGCACGGTGA

Synonyms

Publications