jgi.p|Nanoce1779_2|578381, mRNA_1910 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578381
Unique NamemRNA_1910
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length966
Alignment locationscaffold_4:328356..329321 -

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Properties
Property NameValue
TranscriptId578467
TrackFilteredModels2
ProteinId578381
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:328356..329321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578381gene_1910Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578381mRNA_1910-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1910CDS_1910Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1910 ID=mRNA_1910|Name=jgi.p|Nanoce1779_2|578381|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ACAGATAGAGTGCAATCATGCCGCTTCCTCGAGTGAGCACTGCCACCTGT
ACGAGAAGAAGAAGAATTGCGGACGACTCCTTCTCTCCTCTCCTCTTCCT
CCTACTCCTCGTTGGGCCGACTCCTGCGGTCGCTTTCAGTACCCTGGGCA
GCAGCAGCAGCAGCAATTTTAGCCCTCCAATCACTTCTACGACACCTTTG
ATTGACCGTGTCCCGACCTTTCGCTTGTACCAGGGAGGCGTGTGTCAGAC
ACAGGTGCCGGGGCGTGGAGATGCCGCCGAGTGCCGCGCTCGCCTGCATG
AAGCCATCACGAGTTTGACAAAACCTATCGCTACAAGCAGTATTGATCGC
AACGACAAGGGAAGTGGAAAGGGGGGGGTAAGCAGCAGTGTCTCGACAAG
CTCAAGAAGACGCACCGTGGCGGCTATCCTCGAGATAGACTCACTTTCGG
CTTTGGAAGATCTGCTGGCAGAGCAGCAACAGCACCAAGAGAAATCCACG
CAAGGCACTGATGAGGTGCTGCTTGTCGAATTTTACGGACAAGCTTGCAA
GCAATGTATTGCCCTCGCGCCTTTGTTTGAGTCCTTGCCCTACGTCTACC
CCAACCGGCGGCTGCGATTCGGGCGGGCAGACGTGACAAACTTCCCTACC
TTGGTTGTACCACCACCACCGCCCCAAACCTTCCAGGGCTTGGATCGTAG
CCAAAATATTGAAGAACGGCTGGACGGGTGCCCTACCTGTGGTGGTGGTG
GGTTTGTAGTTTGCGTGGAGTGTGGGGGAAAAGGGCATTTGGTTCGGAGC
GTGAGTGGCCATACTCTGGCAGACGTATGCATGACCTGTATGGGCCAAAA
GAAGATACCATGTCCGCAGTGTGGGGGGAAATGTTACTTATGTTGAGGCG
GTTAAGGAAGAGTGGGAAATGAATTGAAATCAAAGTAAAGATTGATTATA
AACTAAATGAAATGGT
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protein sequence of jgi.p|Nanoce1779_2|578381

>mRNA_1910-protein ID=mRNA_1910-protein|Name=jgi.p|Nanoce1779_2|578381|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MPLPRVSTATCTRRRRIADDSFSPLLFLLLLVGPTPAVAFSTLGSSSSSN
FSPPITSTTPLIDRVPTFRLYQGGVCQTQVPGRGDAAECRARLHEAITSL
TKPIATSSIDRNDKGSGKGGVSSSVSTSSRRRTVAAILEIDSLSALEDLL
AEQQQHQEKSTQGTDEVLLVEFYGQACKQCIALAPLFESLPYVYPNRRLR
FGRADVTNFPTLVVPPPPPQTFQGLDRSQNIEERLDGCPTCGGGGFVVCV
ECGGKGHLVRSVSGHTLADVCMTCMGQKKIPCPQCGGKCYLC*
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mRNA from alignment at scaffold_4:328356..329321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1910 ID=mRNA_1910|Name=jgi.p|Nanoce1779_2|578381|organism=Nannochloropsis oceanica|type=mRNA|length=966bp|location=Sequence derived from alignment at scaffold_4:328356..329321- (Nannochloropsis oceanica)
ACAGATAGAGTGCAATCATGCCGCTTCCTCGAGTGAGCACTGCCACCTGT
ACGAGAAGAAGAAGAATTGCGGACGACTCCTTCTCTCCTCTCCTCTTCCT
CCTACTCCTCGTTGGGCCGACTCCTGCGGTCGCTTTCAGTACCCTGGGCA
GCAGCAGCAGCAGCAATTTTAGCCCTCCAATCACTTCTACGACACCTTTG
ATTGACCGTGTCCCGACCTTTCGCTTGTACCAGGGAGGCGTGTGTCAGAC
ACAGGTGCCGGGGCGTGGAGATGCCGCCGAGTGCCGCGCTCGCCTGCATG
AAGCCATCACGAGTTTGACAAAACCTATCGCTACAAGCAGTATTGATCGC
AACGACAAGGGAAGTGGAAAGGGGGGGGTAAGCAGCAGTGTCTCGACAAG
CTCAAGAAGACGCACCGTGGCGGCTATCCTCGAGATAGACTCACTTTCGG
CTTTGGAAGATCTGCTGGCAGAGCAGCAACAGCACCAAGAGAAATCCACG
CAAGGCACTGATGAGGTGCTGCTTGTCGAATTTTACGGACAAGCTTGCAA
GCAATGTATTGCCCTCGCGCCTTTGTTTGAGTCCTTGCCCTACGTCTACC
CCAACCGGCGGCTGCGATTCGGGCGGGCAGACGTGACAAACTTCCCTACC
TTGGTTGTACCACCACCACCGCCCCAAACCTTCCAGGGCTTGGATCGTAG
CCAAAATATTGAAGAACGGCTGGACGGGTGCCCTACCTGTGGTGGTGGTG
GGTTTGTAGTTTGCGTGGAGTGTGGGGGAAAAGGGCATTTGGTTCGGAGC
GTGAGTGGCCATACTCTGGCAGACGTATGCATGACCTGTATGGGCCAAAA
GAAGATACCATGTCCGCAGTGTGGGGGGAAATGTTACTTATGTTGAGGCG
GTTAAGGAAGAGTGGGAAATGAATTGAAATCAAAGTAAAGATTGATTATA
AACTAAATGAAATGGT
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Coding sequence (CDS) from alignment at scaffold_4:328356..329321-

>mRNA_1910 ID=mRNA_1910|Name=jgi.p|Nanoce1779_2|578381|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at scaffold_4:328356..329321- (Nannochloropsis oceanica)
ATGCCGCTTCCTCGAGTGAGCACTGCCACCTGTACGAGAAGAAGAAGAAT
TGCGGACGACTCCTTCTCTCCTCTCCTCTTCCTCCTACTCCTCGTTGGGC
CGACTCCTGCGGTCGCTTTCAGTACCCTGGGCAGCAGCAGCAGCAGCAAT
TTTAGCCCTCCAATCACTTCTACGACACCTTTGATTGACCGTGTCCCGAC
CTTTCGCTTGTACCAGGGAGGCGTGTGTCAGACACAGGTGCCGGGGCGTG
GAGATGCCGCCGAGTGCCGCGCTCGCCTGCATGAAGCCATCACGAGTTTG
ACAAAACCTATCGCTACAAGCAGTATTGATCGCAACGACAAGGGAAGTGG
AAAGGGGGGGGTAAGCAGCAGTGTCTCGACAAGCTCAAGAAGACGCACCG
TGGCGGCTATCCTCGAGATAGACTCACTTTCGGCTTTGGAAGATCTGCTG
GCAGAGCAGCAACAGCACCAAGAGAAATCCACGCAAGGCACTGATGAGGT
GCTGCTTGTCGAATTTTACGGACAAGCTTGCAAGCAATGTATTGCCCTCG
CGCCTTTGTTTGAGTCCTTGCCCTACGTCTACCCCAACCGGCGGCTGCGA
TTCGGGCGGGCAGACGTGACAAACTTCCCTACCTTGGTTGTACCACCACC
ACCGCCCCAAACCTTCCAGGGCTTGGATCGTAGCCAAAATATTGAAGAAC
GGCTGGACGGGTGCCCTACCTGTGGTGGTGGTGGGTTTGTAGTTTGCGTG
GAGTGTGGGGGAAAAGGGCATTTGGTTCGGAGCGTGAGTGGCCATACTCT
GGCAGACGTATGCATGACCTGTATGGGCCAAAAGAAGATACCATGTCCGC
AGTGTGGGGGGAAATGTTACTTATGTTGA
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Synonyms
Publications