jgi.p|Nanoce1779_2|668273, mRNA_191 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668273
Unique NamemRNA_191
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length295
Alignment locationscaffold_3:481510..482061 -

Link to JBrowse

Properties
Property NameValue
TranscriptId668359
TrackFilteredModels2
ProteinId668273
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:481510..482061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668273gene_191Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668273mRNA_191-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_191CDS_191Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_191 ID=mRNA_191|Name=jgi.p|Nanoce1779_2|668273|organism=Nannochloropsis oceanica|type=mRNA|length=295bp
ATGAGCATAGGGAATGGGGCCGTATTGCCTTGGCTGTCGTCTGCCCTGTG
GGTTGAAAGTATGCTTACCTCCCTCCAAGCTGGGCTTTCCGACATGCTCC
TGAGGGTGTTTACTGGAGAGGAAGTCATGGAAATAATTGTGACGGTGGTA
TTCAAAGTGGAAGAGAACCCAGAAGAACTCCTCGAGGCAATTTCATATGA
ACCCGGGTACACGCGAGGAAAGCAGGCGATGAGGTGGTCGGTCGAGGTTT
TGGCAAAGGATTGAGGAAAAGGAAGAGAGGCAATTTTTGATGTTT
back to top

protein sequence of jgi.p|Nanoce1779_2|668273

>mRNA_191-protein ID=mRNA_191-protein|Name=jgi.p|Nanoce1779_2|668273|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MSIGNGAVLPWLSSALWVESMLTSLQAGLSDMLLRVFTGEEVMEIIVTVV
FKVEENPEELLEAISYEPGYTRGKQAMRWSVEVLAKD*
back to top

mRNA from alignment at scaffold_3:481510..482061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_191 ID=mRNA_191|Name=jgi.p|Nanoce1779_2|668273|organism=Nannochloropsis oceanica|type=mRNA|length=552bp|location=Sequence derived from alignment at scaffold_3:481510..482061- (Nannochloropsis oceanica)
ATGAGCATAGGGAATGGGGCCGTATTGCCTTGGCTGTCGTCTGCCCTGTG
GGTTGAAAGGTAAAATCGACTCTTTTCTCTTAACTTCCCCCATTCAAACA
CTCAAATTTGAATCGCGAAGAGGCGTGCGTCCCAGCAAAAAGTGAGTCCG
AGCGGGATGTTGTCGATCTGTACGTAAAGTTTTTACTTATGTATGTATGA
GTCATACATACATAAGTAAAAACATTTCGAGGCTTATGCGGCTCTGATAC
ATGTAAATTGTTAAAATATCAATATGATCCTATCTGTATCACCCTCGTCT
TCTCCATCTCTCTTAGTATGCTTACCTCCCTCCAAGCTGGGCTTTCCGAC
ATGCTCCTGAGGGTGTTTACTGGAGAGGAAGTCATGGAAATAATTGTGAC
GGTGGTATTCAAAGTGGAAGAGAACCCAGAAGAACTCCTCGAGGCAATTT
CATATGAACCCGGGTACACGCGAGGAAAGCAGGCGATGAGGTGGTCGGTC
GAGGTTTTGGCAAAGGATTGAGGAAAAGGAAGAGAGGCAATTTTTGATGT
TT
back to top

Coding sequence (CDS) from alignment at scaffold_3:481510..482061-

>mRNA_191 ID=mRNA_191|Name=jgi.p|Nanoce1779_2|668273|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_3:481510..482061- (Nannochloropsis oceanica)
TATGCTTACCTCCCTCCAAGCTGGGCTTTCCGACATGCTCCTGAGGGTGT
TTACTGGAGAGGAAGTCATGGAAATAATTGTGACGGTGGTATTCAAAGTG
GAAGAGAACCCAGAAGAACTCCTCGAGGCAATTTCATATGAACCCGGGTA
CACGCGAGGAAAGCAGGCGATGAGGTGGTCGGTCGAGGTTTTGGCAAAGG
ATTGAATGAGCATAGGGAATGGGGCCGTATTGCCTTGGCTGTCGTCTGCC
CTGTGGGTTGAAAGTATGCTTACCTCCCTCCAAGCTGGGCTTTCCGACAT
GCTCCTGAGGGTGTTTACTGGAGAGGAAGTCATGGAAATAATTGTGACGG
TGGTATTCAAAGTGGAAGAGAACCCAGAAGAACTCCTCGAGGCAATTTCA
TATGAACCCGGGTACACGCGAGGAAAGCAGGCGATGAGGTGGTCGGTCGA
GGTTTTGGCAAAGGATTGAATGAGCATAGGGAATGGGGCCGTATTGCCTT
GGCTGTCGTCTGCCCTGTGGGTTGAAAG
back to top
Synonyms
Publications