jgi.p|Nanoce1779_2|578377, mRNA_1908 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578377
Unique NamemRNA_1908
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1415
Alignment locationscaffold_4:323372..324786 +

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Properties
Property NameValue
TranscriptId578463
TrackFilteredModels2
ProteinId578377
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:323372..324786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578377gene_1908Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578377mRNA_1908-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1908CDS_1908Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1908 ID=mRNA_1908|Name=jgi.p|Nanoce1779_2|578377|organism=Nannochloropsis oceanica|type=mRNA|length=1415bp
TCCTCACCATTCACTCCCTCTCCCATCCCTCCTCCTCTTCTTCCTCCTCC
TCCGCCGCCTCCTCCTCCGCCTCCGTTTCCATGCAACCACACACTGCCAA
AACTCCAGAGACTATTTCGACGACTGCTACTTCTTATACACTGATCCTCA
TCCACGTCCCCTCCCCCTTCATCGTGCGGCTCCGACCGGTGGGACTGCCG
ACGAAACTTGCTGCTGCTGCTGTTGCTATCTCGGACACAAGGCAATTGAG
GAATCCCCCCTTCCAGCCCACGACGGGCCGAGTAACGCGAGGGTAGTCTG
AGTGGTGGCCCTTGCCCGCTGCTGTCCTCGCTGTCGCTTGGCGCGGAGGC
CGGGACCGACAGAGGGCCCATTTTGGGGTCGTGAAAAATGGGGTTGGGAG
GAGGGGCGCCGCGGCTGATGCTCTCCCGGTGGGTGCGCAGGGGAGAGCAT
TGCTGCTGCTGGATGACGCTGAGACGATGGGGATTTCTACTTTGCTGTTG
ATATTGCTGTTGTAGCTGTTGCTGTTGTTGCTGAACGCGCTGGAGCTCCC
CGGGATTTAGGACTTCCTCCCGTCGGTCTTCCGCTTCATCCTCCTGCCGT
CCACGATGAGAATGGTCGTGATGTTGGAGACGCTGCTGCTGTTGCTGTCG
CTGCTGCTCTCTGGGCTCACTTTCATCACACGGCTGTTCTTGCCGCCTGC
TCGACCCGGTGCTCACGCCACGCTTGCTGCTTGGTCGGCCTCTCGCGTCC
TCCTCTTCTTGCCCCCTTCGTCGGTGTTGCCGCCCGGGGGAGGTCATCAC
ACTGTCTTCCTCCACTTCGACATCATTGCCTCTCCTTCCCTCTCTCTCTT
CCTCTTCCTCGATATACATCTCGTCCCCCCCGATCGCTCGACGCAACAAC
TCATCATCCAGCTCCCGCAATTCATCCAAGTTTAACATGCTCACATACGA
GTCATACCGACGCCGCCGACCCAAGGATGTCCGTCCACTCCCAGCCCGAG
GACGGATGTTCCAGACATCGGAAGACTCCTCGGGCGGGAAGGGCTGACTG
AAAGGTTGGTGTACAACGACGCGGGGCGGAGGCGAGGGTGGCATTACGCG
GCGGCGAGCAGCAACACGCCCATCAACGTACGGCAACGACCACGGCCGCC
CAAGAGCCGCACCTGGCACGGATGCGCTTCCGTTACTCCTATCGCTGTGA
GACGTGTCGCTGTGCTCGTCGCTCGAGACGGGCAGCGATGAGATATAATC
TTCCGCCTCGCTGTCTCCCCCCAAGCCCGGGGGTGCTGGTGCTGCTGTTG
TCATGGTGTGCAGTGAGGAGGCTCCGCGCAAGGGCGGCTGCGGGTACCCT
GGTCCGTGGGCCGGCCGCATTGCAGAGTGGAACTCGGTGCCTGTCCCTGT
ATGTTGGTTTCTGTT
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protein sequence of jgi.p|Nanoce1779_2|578377

>mRNA_1908-protein ID=mRNA_1908-protein|Name=jgi.p|Nanoce1779_2|578377|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MRMVVMLETLLLLLSLLLSGLTFITRLFLPPARPGAHATLAAWSASRVLL
FLPPSSVLPPGGGHHTVFLHFDIIASPSLSLFLFLDIHLVPPDRSTQQLI
IQLPQFIQV*
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mRNA from alignment at scaffold_4:323372..324786+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1908 ID=mRNA_1908|Name=jgi.p|Nanoce1779_2|578377|organism=Nannochloropsis oceanica|type=mRNA|length=1415bp|location=Sequence derived from alignment at scaffold_4:323372..324786+ (Nannochloropsis oceanica)
TCCTCACCATTCACTCCCTCTCCCATCCCTCCTCCTCTTCTTCCTCCTCC
TCCGCCGCCTCCTCCTCCGCCTCCGTTTCCATGCAACCACACACTGCCAA
AACTCCAGAGACTATTTCGACGACTGCTACTTCTTATACACTGATCCTCA
TCCACGTCCCCTCCCCCTTCATCGTGCGGCTCCGACCGGTGGGACTGCCG
ACGAAACTTGCTGCTGCTGCTGTTGCTATCTCGGACACAAGGCAATTGAG
GAATCCCCCCTTCCAGCCCACGACGGGCCGAGTAACGCGAGGGTAGTCTG
AGTGGTGGCCCTTGCCCGCTGCTGTCCTCGCTGTCGCTTGGCGCGGAGGC
CGGGACCGACAGAGGGCCCATTTTGGGGTCGTGAAAAATGGGGTTGGGAG
GAGGGGCGCCGCGGCTGATGCTCTCCCGGTGGGTGCGCAGGGGAGAGCAT
TGCTGCTGCTGGATGACGCTGAGACGATGGGGATTTCTACTTTGCTGTTG
ATATTGCTGTTGTAGCTGTTGCTGTTGTTGCTGAACGCGCTGGAGCTCCC
CGGGATTTAGGACTTCCTCCCGTCGGTCTTCCGCTTCATCCTCCTGCCGT
CCACGATGAGAATGGTCGTGATGTTGGAGACGCTGCTGCTGTTGCTGTCG
CTGCTGCTCTCTGGGCTCACTTTCATCACACGGCTGTTCTTGCCGCCTGC
TCGACCCGGTGCTCACGCCACGCTTGCTGCTTGGTCGGCCTCTCGCGTCC
TCCTCTTCTTGCCCCCTTCGTCGGTGTTGCCGCCCGGGGGAGGTCATCAC
ACTGTCTTCCTCCACTTCGACATCATTGCCTCTCCTTCCCTCTCTCTCTT
CCTCTTCCTCGATATACATCTCGTCCCCCCCGATCGCTCGACGCAACAAC
TCATCATCCAGCTCCCGCAATTCATCCAAGTTTAACATGCTCACATACGA
GTCATACCGACGCCGCCGACCCAAGGATGTCCGTCCACTCCCAGCCCGAG
GACGGATGTTCCAGACATCGGAAGACTCCTCGGGCGGGAAGGGCTGACTG
AAAGGTTGGTGTACAACGACGCGGGGCGGAGGCGAGGGTGGCATTACGCG
GCGGCGAGCAGCAACACGCCCATCAACGTACGGCAACGACCACGGCCGCC
CAAGAGCCGCACCTGGCACGGATGCGCTTCCGTTACTCCTATCGCTGTGA
GACGTGTCGCTGTGCTCGTCGCTCGAGACGGGCAGCGATGAGATATAATC
TTCCGCCTCGCTGTCTCCCCCCAAGCCCGGGGGTGCTGGTGCTGCTGTTG
TCATGGTGTGCAGTGAGGAGGCTCCGCGCAAGGGCGGCTGCGGGTACCCT
GGTCCGTGGGCCGGCCGCATTGCAGAGTGGAACTCGGTGCCTGTCCCTGT
ATGTTGGTTTCTGTT
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Coding sequence (CDS) from alignment at scaffold_4:323372..324786+

>mRNA_1908 ID=mRNA_1908|Name=jgi.p|Nanoce1779_2|578377|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_4:323372..324786+ (Nannochloropsis oceanica)
ATGAGAATGGTCGTGATGTTGGAGACGCTGCTGCTGTTGCTGTCGCTGCT
GCTCTCTGGGCTCACTTTCATCACACGGCTGTTCTTGCCGCCTGCTCGAC
CCGGTGCTCACGCCACGCTTGCTGCTTGGTCGGCCTCTCGCGTCCTCCTC
TTCTTGCCCCCTTCGTCGGTGTTGCCGCCCGGGGGAGGTCATCACACTGT
CTTCCTCCACTTCGACATCATTGCCTCTCCTTCCCTCTCTCTCTTCCTCT
TCCTCGATATACATCTCGTCCCCCCCGATCGCTCGACGCAACAACTCATC
ATCCAGCTCCCGCAATTCATCCAAGTTTAA
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Synonyms
Publications