jgi.p|Nanoce1779_2|628095, mRNA_1907 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628095
Unique Name	mRNA_1907
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2810
Alignment location	scaffold_4:320613..323422 -

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Properties


Property Name	Value
TranscriptId	628181
Track	FilteredModels2
ProteinId	628095

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:320613..323422 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628095	gene_1907	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628095	mRNA_1907-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1907	CDS_1907	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:320613..323422-
coding sequence from alignment at scaffold_4:320613..323422-

mRNA sequence

>mRNA_1907 ID=mRNA_1907|Name=jgi.p|Nanoce1779_2|628095|organism=Nannochloropsis oceanica|type=mRNA|length=2810bp
AGGAGGAGGAAGAAGAGGAGGAGGGATGGGAGAGGGAGTGAATGGTGAGG
AGAGCGTGCCCCCCACGTTCAACAGCAGCAGTGGCCCCGGGAAGCGTACC
CTCTTATACTGGTTGGATCAACGATTGCCTCGCATGTCGGATGAGGAAAG
AATCGCCCGTGCGTCTCTCTATGTGAGTGATGCTATCGACACGCGGCCGG
TGCGGATGCGGGGTGGGGGAAAGGGTAATCTCTTTGCTTACCGCCTCCTA
AAGCGCAGGGGCTGGCTATGGATGATGCAAGCCCTAGCCATCTTTCATCT
CCTGCTCGCTCTCTGGGAGCCTCCGCGAGCCTTGCCAGACTCTGCAGAAT
ATCATGATTCCATCTCCCGGCATGTTCTGACCGGTGCTGCTTCTACTGCA
CAACACCTCTTGGGACTGGAGCTGTTTCTCGTGCTCCTCTTCATGCTGGA
CATTTTCCTGGAGGTGTACGCCTTGGGTTTCAATGCTTTTTTTGGTACCA
ACGCCCCGCCTCGTGTCTTGGAGAACAAGGGGAGGGGCAATGCCGTGCAA
GCCAAGCTTTGGGGCCAAGCACGCCTCATCCTCGTCATCGTCTTCTTCGC
TGACATATGCGCCGCCTTAGACAAGCCCAACGATAGCCCCCGTTTCTCCC
GCCCTTTGCGTCCACTTTATTTTATTTGCCTATCCGAGACCCTGAAGCGA
TGGAGCATCCTTCTCGTCCGGCTCCTGGGCCAGCTCCGTGACGTCGCCCT
CGGCACCGGCATCTTCCTAGGTCTTTTCTCCCTTCTCGGGCTTATCCTCT
TCTCCGAAACCGAGTATTACTCTTCCTCCATCCCCTATCTGAACTTCAAC
AATTTCCTCAACTCCTTTCTGGCTCTCTACGTCCTCACGACCACCCAAAA
TTTCGGCGCTCTCCTCAATCCTGCCTATTCAGCCAACCCTCAAGGTTCCT
CTCCTCTCTACTTCTTCTTCTTTATGGCCTTCGTATTGATCGTCGTCCTC
TTCCTCGCGCACTTGGCCCTCCCACGTGTCTTCTGGGTGTACCAAAAATT
CCAACGCCAACAAGCATACGATAGCCGGCTGCTGGAGCGTTTGGCCCTGG
TGATGACTTTCCGTTGCCTCGATCCCGATAAGCGTGGTTGGGTTGACTTA
AGCTCTTTCCGATCAATGCTGCGATACGCCCGCCCCGACTTTTTTGACCT
CCACACAGGGTACGAGAAAGACTCGTATTGCGGGGCCACTGAGCACATGT
TCGGCGAGCTAGCCCACACACACCCGGGCCGTGTCTATCCCCACGAGTTC
CTCTCTGTATGCGAGGTGATCCTAACGGATTATTATCCATGTCTCCCACC
TTTGGATCAGCCGGGCATGGCGGCTTCTGAGTGGCACCAGCGGGAACGAG
CACGGTTCCGCGCTATTCTCAGTTCACGATGGGCGGAAGTAGGGTCAATG
ACCTTGTTATTGCTGACTTGTTTTTTCCTCACCTTTTACGGAAGCCCCGC
TGTCAGCAAGACGTCACTCCGAGGGTTCTCCCACTCAGTCGTCGTCTTCT
TCGCCGTCGAAATGGCTTTGAGGCTCTGGGCATTCGGTCCCAAGCTCTTC
CTCTCCTCCCCTTCCAATGTCGTGGATCTTCTCATCATCAGCGCCTCCTT
CATCTCCCTCCTAGTCTACGCCTTCGCCCCTCCACACTCCCCCCTTCACG
AGTCCGAGCAAATGGCCAACCTCTGCCTCCTCTTCCTCACTCTTCGAGTC
GTTCGACTCTTTCCCAAATGTGCGATCTTCAGAAAATTTTCCAGCGCCTT
CCGAGTCCTGCCCTTCTTCCTCTCCTCCTTTTTTCTCTGTGTTCTCATCT
CCTATTCTTGGGCTGTGTTCGGTATGGCCCTTTTCGCGCGCTACGGAGAG
CAGATCCAAGCCACCACAGCTACCACACATCAAGATCTAGCTGGATGGGC
GTCCATCGATAATTTCAACTCCTTTTGGAGTGCATCTGTGACACTGTTTC
AAGTAGCGACGACGTATGATTGGTATAGAATCATGTATTTGTGGATGGAT
TTAGCTGAGTCTCCTTGGGTGTCGATGTACTTTTTGGCCTTTCACTTGGT
GGCCAATGTCGTAGTTTATCAGCTGACGGCTGCTCTATTCATCGACGCCT
TTTTGTCGTTTTCGGATAAGCGGTGGGTAGAGCAGGAGGATGGGGAGGGA
TGGGATAGAGGTAGAAGGACCTCCGGGAGGGGAGTGGGTTTGGAAGGGTT
GGACGAGGAAGACGTGGATGAGAGCGAGGATGGCAAGGATAGGGTGGCAC
AGACGAGGTGTAATGCTGATGCGAGTATAATACAACGCTGGAGCCAAAAG
TCGGGAACGGCGTCCTCTGTTGCATCAAAATCAGGGCTTGCCGGCACCAA
TTCTTCGTCCACCCCGAGCGACGACCTGGAGAATCAGCCACACCGCCGCA
GTGAGGGTGGTGGGATGGAAAGCGGGGGAAGACGGTCTCCGTCCTATCAA
GCCTCCGTGATTTAATATAGTTGAGTGTCTCTGGAGGAATAGCAACGGCA
AGCGTGATGTTCGTCAGGTCTTGCGGGGGGATACGGAACAGTAGATCGTT
AGCGCTATCTTCCAGGGCAGGCTGGTGCCTGGTTACAGTTTGCTCTAAGT
AACCAGAATGAGATAAATAATGAGATAATTTTATTGCGTTATTATTTATT
ATATTTATTATTAATTATATTAATAATTAATTATTATCTCTTGAATGAAT
AGTTCTTTTGAGTTCCTACATCTCTCTAGAACTATCGCATGCAACCTGAC
GTCTTCGAGG

protein sequence of jgi.p|Nanoce1779_2|628095

>mRNA_1907-protein ID=mRNA_1907-protein|Name=jgi.p|Nanoce1779_2|628095|organism=Nannochloropsis oceanica|type=polypeptide|length=830bp
MGEGVNGEESVPPTFNSSSGPGKRTLLYWLDQRLPRMSDEERIARASLYV
SDAIDTRPVRMRGGGKGNLFAYRLLKRRGWLWMMQALAIFHLLLALWEPP
RALPDSAEYHDSISRHVLTGAASTAQHLLGLELFLVLLFMLDIFLEVYAL
GFNAFFGTNAPPRVLENKGRGNAVQAKLWGQARLILVIVFFADICAALDK
PNDSPRFSRPLRPLYFICLSETLKRWSILLVRLLGQLRDVALGTGIFLGL
FSLLGLILFSETEYYSSSIPYLNFNNFLNSFLALYVLTTTQNFGALLNPA
YSANPQGSSPLYFFFFMAFVLIVVLFLAHLALPRVFWVYQKFQRQQAYDS
RLLERLALVMTFRCLDPDKRGWVDLSSFRSMLRYARPDFFDLHTGYEKDS
YCGATEHMFGELAHTHPGRVYPHEFLSVCEVILTDYYPCLPPLDQPGMAA
SEWHQRERARFRAILSSRWAEVGSMTLLLLTCFFLTFYGSPAVSKTSLRG
FSHSVVVFFAVEMALRLWAFGPKLFLSSPSNVVDLLIISASFISLLVYAF
APPHSPLHESEQMANLCLLFLTLRVVRLFPKCAIFRKFSSAFRVLPFFLS
SFFLCVLISYSWAVFGMALFARYGEQIQATTATTHQDLAGWASIDNFNSF
WSASVTLFQVATTYDWYRIMYLWMDLAESPWVSMYFLAFHLVANVVVYQL
TAALFIDAFLSFSDKRWVEQEDGEGWDRGRRTSGRGVGLEGLDEEDVDES
EDGKDRVAQTRCNADASIIQRWSQKSGTASSVASKSGLAGTNSSSTPSDD
LENQPHRRSEGGGMESGGRRSPSYQASVI*

mRNA from alignment at scaffold_4:320613..323422-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1907 ID=mRNA_1907|Name=jgi.p|Nanoce1779_2|628095|organism=Nannochloropsis oceanica|type=mRNA|length=2810bp|location=Sequence derived from alignment at scaffold_4:320613..323422- (Nannochloropsis oceanica)
AGGAGGAGGAAGAAGAGGAGGAGGGATGGGAGAGGGAGTGAATGGTGAGG
AGAGCGTGCCCCCCACGTTCAACAGCAGCAGTGGCCCCGGGAAGCGTACC
CTCTTATACTGGTTGGATCAACGATTGCCTCGCATGTCGGATGAGGAAAG
AATCGCCCGTGCGTCTCTCTATGTGAGTGATGCTATCGACACGCGGCCGG
TGCGGATGCGGGGTGGGGGAAAGGGTAATCTCTTTGCTTACCGCCTCCTA
AAGCGCAGGGGCTGGCTATGGATGATGCAAGCCCTAGCCATCTTTCATCT
CCTGCTCGCTCTCTGGGAGCCTCCGCGAGCCTTGCCAGACTCTGCAGAAT
ATCATGATTCCATCTCCCGGCATGTTCTGACCGGTGCTGCTTCTACTGCA
CAACACCTCTTGGGACTGGAGCTGTTTCTCGTGCTCCTCTTCATGCTGGA
CATTTTCCTGGAGGTGTACGCCTTGGGTTTCAATGCTTTTTTTGGTACCA
ACGCCCCGCCTCGTGTCTTGGAGAACAAGGGGAGGGGCAATGCCGTGCAA
GCCAAGCTTTGGGGCCAAGCACGCCTCATCCTCGTCATCGTCTTCTTCGC
TGACATATGCGCCGCCTTAGACAAGCCCAACGATAGCCCCCGTTTCTCCC
GCCCTTTGCGTCCACTTTATTTTATTTGCCTATCCGAGACCCTGAAGCGA
TGGAGCATCCTTCTCGTCCGGCTCCTGGGCCAGCTCCGTGACGTCGCCCT
CGGCACCGGCATCTTCCTAGGTCTTTTCTCCCTTCTCGGGCTTATCCTCT
TCTCCGAAACCGAGTATTACTCTTCCTCCATCCCCTATCTGAACTTCAAC
AATTTCCTCAACTCCTTTCTGGCTCTCTACGTCCTCACGACCACCCAAAA
TTTCGGCGCTCTCCTCAATCCTGCCTATTCAGCCAACCCTCAAGGTTCCT
CTCCTCTCTACTTCTTCTTCTTTATGGCCTTCGTATTGATCGTCGTCCTC
TTCCTCGCGCACTTGGCCCTCCCACGTGTCTTCTGGGTGTACCAAAAATT
CCAACGCCAACAAGCATACGATAGCCGGCTGCTGGAGCGTTTGGCCCTGG
TGATGACTTTCCGTTGCCTCGATCCCGATAAGCGTGGTTGGGTTGACTTA
AGCTCTTTCCGATCAATGCTGCGATACGCCCGCCCCGACTTTTTTGACCT
CCACACAGGGTACGAGAAAGACTCGTATTGCGGGGCCACTGAGCACATGT
TCGGCGAGCTAGCCCACACACACCCGGGCCGTGTCTATCCCCACGAGTTC
CTCTCTGTATGCGAGGTGATCCTAACGGATTATTATCCATGTCTCCCACC
TTTGGATCAGCCGGGCATGGCGGCTTCTGAGTGGCACCAGCGGGAACGAG
CACGGTTCCGCGCTATTCTCAGTTCACGATGGGCGGAAGTAGGGTCAATG
ACCTTGTTATTGCTGACTTGTTTTTTCCTCACCTTTTACGGAAGCCCCGC
TGTCAGCAAGACGTCACTCCGAGGGTTCTCCCACTCAGTCGTCGTCTTCT
TCGCCGTCGAAATGGCTTTGAGGCTCTGGGCATTCGGTCCCAAGCTCTTC
CTCTCCTCCCCTTCCAATGTCGTGGATCTTCTCATCATCAGCGCCTCCTT
CATCTCCCTCCTAGTCTACGCCTTCGCCCCTCCACACTCCCCCCTTCACG
AGTCCGAGCAAATGGCCAACCTCTGCCTCCTCTTCCTCACTCTTCGAGTC
GTTCGACTCTTTCCCAAATGTGCGATCTTCAGAAAATTTTCCAGCGCCTT
CCGAGTCCTGCCCTTCTTCCTCTCCTCCTTTTTTCTCTGTGTTCTCATCT
CCTATTCTTGGGCTGTGTTCGGTATGGCCCTTTTCGCGCGCTACGGAGAG
CAGATCCAAGCCACCACAGCTACCACACATCAAGATCTAGCTGGATGGGC
GTCCATCGATAATTTCAACTCCTTTTGGAGTGCATCTGTGACACTGTTTC
AAGTAGCGACGACGTATGATTGGTATAGAATCATGTATTTGTGGATGGAT
TTAGCTGAGTCTCCTTGGGTGTCGATGTACTTTTTGGCCTTTCACTTGGT
GGCCAATGTCGTAGTTTATCAGCTGACGGCTGCTCTATTCATCGACGCCT
TTTTGTCGTTTTCGGATAAGCGGTGGGTAGAGCAGGAGGATGGGGAGGGA
TGGGATAGAGGTAGAAGGACCTCCGGGAGGGGAGTGGGTTTGGAAGGGTT
GGACGAGGAAGACGTGGATGAGAGCGAGGATGGCAAGGATAGGGTGGCAC
AGACGAGGTGTAATGCTGATGCGAGTATAATACAACGCTGGAGCCAAAAG
TCGGGAACGGCGTCCTCTGTTGCATCAAAATCAGGGCTTGCCGGCACCAA
TTCTTCGTCCACCCCGAGCGACGACCTGGAGAATCAGCCACACCGCCGCA
GTGAGGGTGGTGGGATGGAAAGCGGGGGAAGACGGTCTCCGTCCTATCAA
GCCTCCGTGATTTAATATAGTTGAGTGTCTCTGGAGGAATAGCAACGGCA
AGCGTGATGTTCGTCAGGTCTTGCGGGGGGATACGGAACAGTAGATCGTT
AGCGCTATCTTCCAGGGCAGGCTGGTGCCTGGTTACAGTTTGCTCTAAGT
AACCAGAATGAGATAAATAATGAGATAATTTTATTGCGTTATTATTTATT
ATATTTATTATTAATTATATTAATAATTAATTATTATCTCTTGAATGAAT
AGTTCTTTTGAGTTCCTACATCTCTCTAGAACTATCGCATGCAACCTGAC
GTCTTCGAGG

Coding sequence (CDS) from alignment at scaffold_4:320613..323422-

>mRNA_1907 ID=mRNA_1907|Name=jgi.p|Nanoce1779_2|628095|organism=Nannochloropsis oceanica|type=CDS|length=2490bp|location=Sequence derived from alignment at scaffold_4:320613..323422- (Nannochloropsis oceanica)
ATGGGAGAGGGAGTGAATGGTGAGGAGAGCGTGCCCCCCACGTTCAACAG
CAGCAGTGGCCCCGGGAAGCGTACCCTCTTATACTGGTTGGATCAACGAT
TGCCTCGCATGTCGGATGAGGAAAGAATCGCCCGTGCGTCTCTCTATGTG
AGTGATGCTATCGACACGCGGCCGGTGCGGATGCGGGGTGGGGGAAAGGG
TAATCTCTTTGCTTACCGCCTCCTAAAGCGCAGGGGCTGGCTATGGATGA
TGCAAGCCCTAGCCATCTTTCATCTCCTGCTCGCTCTCTGGGAGCCTCCG
CGAGCCTTGCCAGACTCTGCAGAATATCATGATTCCATCTCCCGGCATGT
TCTGACCGGTGCTGCTTCTACTGCACAACACCTCTTGGGACTGGAGCTGT
TTCTCGTGCTCCTCTTCATGCTGGACATTTTCCTGGAGGTGTACGCCTTG
GGTTTCAATGCTTTTTTTGGTACCAACGCCCCGCCTCGTGTCTTGGAGAA
CAAGGGGAGGGGCAATGCCGTGCAAGCCAAGCTTTGGGGCCAAGCACGCC
TCATCCTCGTCATCGTCTTCTTCGCTGACATATGCGCCGCCTTAGACAAG
CCCAACGATAGCCCCCGTTTCTCCCGCCCTTTGCGTCCACTTTATTTTAT
TTGCCTATCCGAGACCCTGAAGCGATGGAGCATCCTTCTCGTCCGGCTCC
TGGGCCAGCTCCGTGACGTCGCCCTCGGCACCGGCATCTTCCTAGGTCTT
TTCTCCCTTCTCGGGCTTATCCTCTTCTCCGAAACCGAGTATTACTCTTC
CTCCATCCCCTATCTGAACTTCAACAATTTCCTCAACTCCTTTCTGGCTC
TCTACGTCCTCACGACCACCCAAAATTTCGGCGCTCTCCTCAATCCTGCC
TATTCAGCCAACCCTCAAGGTTCCTCTCCTCTCTACTTCTTCTTCTTTAT
GGCCTTCGTATTGATCGTCGTCCTCTTCCTCGCGCACTTGGCCCTCCCAC
GTGTCTTCTGGGTGTACCAAAAATTCCAACGCCAACAAGCATACGATAGC
CGGCTGCTGGAGCGTTTGGCCCTGGTGATGACTTTCCGTTGCCTCGATCC
CGATAAGCGTGGTTGGGTTGACTTAAGCTCTTTCCGATCAATGCTGCGAT
ACGCCCGCCCCGACTTTTTTGACCTCCACACAGGGTACGAGAAAGACTCG
TATTGCGGGGCCACTGAGCACATGTTCGGCGAGCTAGCCCACACACACCC
GGGCCGTGTCTATCCCCACGAGTTCCTCTCTGTATGCGAGGTGATCCTAA
CGGATTATTATCCATGTCTCCCACCTTTGGATCAGCCGGGCATGGCGGCT
TCTGAGTGGCACCAGCGGGAACGAGCACGGTTCCGCGCTATTCTCAGTTC
ACGATGGGCGGAAGTAGGGTCAATGACCTTGTTATTGCTGACTTGTTTTT
TCCTCACCTTTTACGGAAGCCCCGCTGTCAGCAAGACGTCACTCCGAGGG
TTCTCCCACTCAGTCGTCGTCTTCTTCGCCGTCGAAATGGCTTTGAGGCT
CTGGGCATTCGGTCCCAAGCTCTTCCTCTCCTCCCCTTCCAATGTCGTGG
ATCTTCTCATCATCAGCGCCTCCTTCATCTCCCTCCTAGTCTACGCCTTC
GCCCCTCCACACTCCCCCCTTCACGAGTCCGAGCAAATGGCCAACCTCTG
CCTCCTCTTCCTCACTCTTCGAGTCGTTCGACTCTTTCCCAAATGTGCGA
TCTTCAGAAAATTTTCCAGCGCCTTCCGAGTCCTGCCCTTCTTCCTCTCC
TCCTTTTTTCTCTGTGTTCTCATCTCCTATTCTTGGGCTGTGTTCGGTAT
GGCCCTTTTCGCGCGCTACGGAGAGCAGATCCAAGCCACCACAGCTACCA
CACATCAAGATCTAGCTGGATGGGCGTCCATCGATAATTTCAACTCCTTT
TGGAGTGCATCTGTGACACTGTTTCAAGTAGCGACGACGTATGATTGGTA
TAGAATCATGTATTTGTGGATGGATTTAGCTGAGTCTCCTTGGGTGTCGA
TGTACTTTTTGGCCTTTCACTTGGTGGCCAATGTCGTAGTTTATCAGCTG
ACGGCTGCTCTATTCATCGACGCCTTTTTGTCGTTTTCGGATAAGCGGTG
GGTAGAGCAGGAGGATGGGGAGGGATGGGATAGAGGTAGAAGGACCTCCG
GGAGGGGAGTGGGTTTGGAAGGGTTGGACGAGGAAGACGTGGATGAGAGC
GAGGATGGCAAGGATAGGGTGGCACAGACGAGGTGTAATGCTGATGCGAG
TATAATACAACGCTGGAGCCAAAAGTCGGGAACGGCGTCCTCTGTTGCAT
CAAAATCAGGGCTTGCCGGCACCAATTCTTCGTCCACCCCGAGCGACGAC
CTGGAGAATCAGCCACACCGCCGCAGTGAGGGTGGTGGGATGGAAAGCGG
GGGAAGACGGTCTCCGTCCTATCAAGCCTCCGTGATTTAA

Synonyms

Publications