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Properties
| Property Name | Value |
|---|
| TranscriptId | 668755 |
| Track | FilteredModels2 |
| ProteinId | 668669 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:316653..318845 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1906 ID=mRNA_1906|Name=jgi.p|Nanoce1779_2|668669|organism=Nannochloropsis oceanica|type=mRNA|length=2051bp
ATGACGGGTGTCATAGACAGCAGAAATGCTGTGGTACGTAGGCATAGTTT
TACAGACAACGAGGAGCGGAAGGAAGGCGGGGGGGGCGCCTCAACCATAC
TGCAAATTGGGATTGAAGCAGAAGACGAGGCACCTTTCCTGGCCGGACCT
GCTGCGCGTCGCGGCCGCCGCAGCAGCGCTTCCATGGCTTGGCTGGGCCT
CCGCTACCTGCTCACATGGCGGAACATGCTGATTGTGAAAGTGGGAAGCG
TAATCCTTTTCATGCTAACTCGAGCGTACGTCTCTCGTCGAGATCCGCCG
CAAAATTACTCTCACGTGCACGCGTCGCCACGGCATGCAGCAGCGCAGCA
GCAGAATCAGCAGAGTCAGCAGAACCGGCAGCAGCAGCAGCAGCAGCGAC
GACAACAACCACAAGACCAACAGCACCAAAGGCGTCCGGAGGTGTACAAG
CTTCAGCCAGGAATGTGGAGCCGCAGCTACAAGCTTTTTCAAGACAGCAT
TCACCACATGCGCCATAGCTGGGTGAAGCATGGCGCGGCGCCTGGACAAG
TTTCGGTGGTTGGGCCGATGCCTGCACGTTGTGCTTGGCCGGGAAATTTA
TCTGCCTCGTCTTCACATTTCTTCCTTGGTGGACAGCACTTTGACTACTT
CCCACCTCCTATGATGAGGACACTGCAACGTCGAGGGGTGGTCATCAGCG
CGTCAGGCACCGTTCCCCGTCTCGCCGCAGGAGCTTACATTACTGCCTAC
TTAATCCGCAAAGTTTTTAATTCTGACTTGCCCATTGAAATTTACCACGT
CGGTGAGCGCGAAGCTTTTGATCCTGAGCTTAAAACCCACCTTATTGCCC
TCGGTAATTTGCAAGTCCTCGACCTGGTGGTGGTTCTACGGGACAAATTC
GGCACCGCCGTAAGTCAAGCTGGAGCCAAGGCAGCTAGGGCTGATGCCGC
AAAACAAATGGCCGGGGAAGGTAGAAGAACTGACGACGAGGAGGAATACG
AGACCCCGCAGCGAGGTGGGGAGCAGACTGTCGACGCCGATAGCCACCTC
TATTATCTCATGCCTTCGATCAGGCAGCTTGCTTCTTATGCGGCCAAACC
TTACACCGTTCTTGCGTCATCCTTCCAAGAAAATGTGCTCTTTGACGCAG
GAGCTGTCCCGTTCCTAGACCCGGAGATGCTTTTAAGCTTGGCTGACTAC
ACGGAGTTGGGCTTTGCAGATTTTCGAGATTATGTCCCTTCGTCTTCGCA
CAAGTGGGACTGGATTCCTGAAGAGTTTTGTGTTGATACGGATGCAGTGG
TTGAGTACTATCGGGGCACGGAAGGTGACAGCAGCTGTGTCCTCTTTGAT
AAGGCCCGAAATTGGGACGCGTTGCTTGTGACTGCAATTTTGAACGGGCC
CTTGCAACATATTACGTACAACAAAATGAATGGGGATAAAGACACCTGGG
TTATGGCGTTGTCCTATACGCGACAGGGGAAACTTCCACCACTACGCACG
CTGCCGGGCTTTCTCTTCATCGATTACGAGGGAAATGGTGAAGCAAGGAA
GATTCACGGGCAGTTGCAACTTCTCAAGGTGGGCATGGACGGGGGCGATG
AATACATGATGGGCGCCAAGGCCCTCTGGCAGGCGCCGCCAATTGATGCC
AAGGGTTTTTTAATTCCGCTTTATTTTAATAACCAGCTGTTCAATTTTAC
GCAATGGGAGTATAACAAGGGCTGGACCTATATCGGCAGCTATGATGACT
ACGGCTCGCTCTACAATCCGCCCACATCCCTGTCGCCCGACTGCCGCCCC
GTGCCTGTGGACGGCCTGGACCCACTAGTAGCGCCCATGGAAATCGCCTT
TGACGGGGTGGTGGAGGCCTTGAGGGCCATAAACTCGACACATTGCGGAT
GTCGGGATGATTGGCCTACGGCGTGTGTGACATTTGTATACTAATTAGAA
GCAAAGACAGAGGAAGGGATTTATATGTTCACTGCACAAACGCAACCGCA
AAGAAAAGAGAGATATAGGAAATCAGAGAGGAAGTTCAGGCAAAGACAAA
C back to topprotein sequence of jgi.p|Nanoce1779_2|668669 >mRNA_1906-protein ID=mRNA_1906-protein|Name=jgi.p|Nanoce1779_2|668669|organism=Nannochloropsis oceanica|type=polypeptide|length=648bp
MTGVIDSRNAVVRRHSFTDNEERKEGGGGASTILQIGIEAEDEAPFLAGP
AARRGRRSSASMAWLGLRYLLTWRNMLIVKVGSVILFMLTRAYVSRRDPP
QNYSHVHASPRHAAAQQQNQQSQQNRQQQQQQRRQQPQDQQHQRRPEVYK
LQPGMWSRSYKLFQDSIHHMRHSWVKHGAAPGQVSVVGPMPARCAWPGNL
SASSSHFFLGGQHFDYFPPPMMRTLQRRGVVISASGTVPRLAAGAYITAY
LIRKVFNSDLPIEIYHVGEREAFDPELKTHLIALGNLQVLDLVVVLRDKF
GTAVSQAGAKAARADAAKQMAGEGRRTDDEEEYETPQRGGEQTVDADSHL
YYLMPSIRQLASYAAKPYTVLASSFQENVLFDAGAVPFLDPEMLLSLADY
TELGFADFRDYVPSSSHKWDWIPEEFCVDTDAVVEYYRGTEGDSSCVLFD
KARNWDALLVTAILNGPLQHITYNKMNGDKDTWVMALSYTRQGKLPPLRT
LPGFLFIDYEGNGEARKIHGQLQLLKVGMDGGDEYMMGAKALWQAPPIDA
KGFLIPLYFNNQLFNFTQWEYNKGWTYIGSYDDYGSLYNPPTSLSPDCRP
VPVDGLDPLVAPMEIAFDGVVEALRAINSTHCGCRDDWPTACVTFVY* back to topmRNA from alignment at scaffold_4:316653..318845- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1906 ID=mRNA_1906|Name=jgi.p|Nanoce1779_2|668669|organism=Nannochloropsis oceanica|type=mRNA|length=2193bp|location=Sequence derived from alignment at scaffold_4:316653..318845- (Nannochloropsis oceanica)
ATGACGGGTGTCATAGACAGCAGAAATGCTGTGGTACGTAGGCATAGTTT
TACAGACAACGAGGAGCGGAAGGAAGGCGGGGGGGGCGCCTCAACCATAC
TGCAAATTGGGATTGAAGCAGAAGACGAGGCACCTTTCCTGGCCGGACCT
GCTGCGCGTCGCGGCCGCCGCAGCAGCGCTTCCATGGCTTGGCTGGGCCT
CCGCTACCTGCTCACATGGCGGAACATGCTGATTGTGAAAGTGGGAAGCG
TAATCCTTTTCATGCTAACTCGAGCGTACGTCTCTCGTCGAGATCCGCCG
CAAAATTACTCTCACGTGCACGCGTCGCCACGGCATGCAGCAGCGCAGCA
GCAGAATCAGCAGAGTCAGCAGAACCGGCAGCAGCAGCAGCAGCAGCGAC
GACAACAACCACAAGACCAACAGCACCAAAGGCGTCCGGAGGTGTACAAG
CTTCAGCCAGGAATGTGGAGCCGCAGCTACAAGCTTTTTCAAGACAGCAT
TCACCACATGCGCCATAGCTGGGTGAAGCATGGCGCGGCGCCTGGACAAG
TTTCGGTGGTTGGGCCGATGCCTGCACGTTGTGCTTGGCCGGGAAATTTA
TCTGCCTCGTCTTCACATTTCTTCCTTGGTGGACAGCACTTTGACTACTT
CCCACCTCCTATGATGAGGACACTGCAACGTCGAGGGGTGGTCATCAGCG
CGTCAGGCACCGTTCCCCGTCTCGCCGCAGGAGCTTACATTACTGCCTAC
TTAATCCGCAAAGTTTTTAATTCTGACTTGCCCATTGAAATTTACCACGT
CGGTGAGCGCGAAGCTTTTGATCCTGAGCTTAAAACCCACCTTATTGCCC
TCGGTAATTTGCAAGTCCTCGACCTGGTGGTGGTTCTACGGGACAAATTC
GGCACCGCCGTAAGTCAAGCTGGAGCCAAGGCAGCTAGGGCTGATGCCGC
AAAACAAATGGCCGGGGAAGGTAGAAGAACTGACGACGAGGAGGAATACG
AGACCCCGCAGCGAGGTGGGGAGCAGACTGTCGACGCCGATAGCCACCTC
TATTATCTCATGCCTTCGATCAGGCAGCTTGCTTCTTATGCGGCCAAACC
TTACACCGTTCTTGCGTCATCCTTCCAAGAAAATGTGCTCTTTGACGCAG
GAGCTGTCCCGTTCCTAGACCCGGAGATGCTTTTAAGCTTGGCTGACTAC
ACGGAGTTGGGCTTTGCAGATTTTCGAGATTATGTCCCTTCGTCTTCGCA
CAAGTGGGACTGGATTCCTGAAGAGTTTTGTGTTGATACGGATGCAGTGG
TTGAGTACTATCGGGGCACGGAAGGTGACAGCAGCTGTGTCCTCTTTGAT
AAGGCCCGAAATTGGGACGCGTTGCTTGTGACTGCAATTTTGAACGGGCC
CTTGCAACATATTACGTACAACAAAATGAATGGGGATAAAGACACCTGGG
TTATGGCGTTGTCCTATACGCGACAGGGGAAACTTCCACCACTACGCACG
CTGCCGGGCTTTCTCTTCATCGATTACGAGGGAAATGGTGAAGCAAGGAA
GATTCACGGGCAGTTGCAACTTCTCAAGGTGGGCATGGACGGGGGCGATG
AATACATGATGGGCGCCAAGGCCCTCTGGCAGGCGCCGCCAATTGATGCC
AAGGGTTTTTTAATTCCGCTTTATTTTAATAACCAGCTGTGTAAGTAAGT
CAGTGGAGTGCGACACACGAGACATACTCCAAAAGGCGGAATATGTTCAT
AAATTGTATCTTGAATGTGACTCGAGGTTCTGCGGCGCTTTATTTGGCAA
GGTCTAATCTTCTTTCATTCACACATAAACAGTCAATTTTACGCAATGGG
AGTATAACAAGGGCTGGACCTATATCGGCAGCTATGATGACTACGGCTCG
CTCTACAATCCGCCCACATCCCTGTCGCCCGACTGCCGCCCCGTGCCTGT
GGACGGCCTGGACCCACTAGTAGCGCCCATGGAAATCGCCTTTGACGGGG
TGGTGGAGGCCTTGAGGGCCATAAACTCGACACATTGCGGATGTCGGGAT
GATTGGCCTACGGCGTGTGTGACATTTGTATACTAATTAGAAGCAAAGAC
AGAGGAAGGGATTTATATGTTCACTGCACAAACGCAACCGCAAAGAAAAG
AGAGATATAGGAAATCAGAGAGGAAGTTCAGGCAAAGACAAAC back to topCoding sequence (CDS) from alignment at scaffold_4:316653..318845- >mRNA_1906 ID=mRNA_1906|Name=jgi.p|Nanoce1779_2|668669|organism=Nannochloropsis oceanica|type=CDS|length=3888bp|location=Sequence derived from alignment at scaffold_4:316653..318845- (Nannochloropsis oceanica)
TCAATTTTACGCAATGGGAGTATAACAAGGGCTGGACCTATATCGGCAGC
TATGATGACTACGGCTCGCTCTACAATCCGCCCACATCCCTGTCGCCCGA
CTGCCGCCCCGTGCCTGTGGACGGCCTGGACCCACTAGTAGCGCCCATGG
AAATCGCCTTTGACGGGGTGGTGGAGGCCTTGAGGGCCATAAACTCGACA
CATTGCGGATGTCGGGATGATTGGCCTACGGCGTGTGTGACATTTGTATA
CTAAATGACGGGTGTCATAGACAGCAGAAATGCTGTGGTACGTAGGCATA
GTTTTACAGACAACGAGGAGCGGAAGGAAGGCGGGGGGGGCGCCTCAACC
ATACTGCAAATTGGGATTGAAGCAGAAGACGAGGCACCTTTCCTGGCCGG
ACCTGCTGCGCGTCGCGGCCGCCGCAGCAGCGCTTCCATGGCTTGGCTGG
GCCTCCGCTACCTGCTCACATGGCGGAACATGCTGATTGTGAAAGTGGGA
AGCGTAATCCTTTTCATGCTAACTCGAGCGTACGTCTCTCGTCGAGATCC
GCCGCAAAATTACTCTCACGTGCACGCGTCGCCACGGCATGCAGCAGCGC
AGCAGCAGAATCAGCAGAGTCAGCAGAACCGGCAGCAGCAGCAGCAGCAG
CGACGACAACAACCACAAGACCAACAGCACCAAAGGCGTCCGGAGGTGTA
CAAGCTTCAGCCAGGAATGTGGAGCCGCAGCTACAAGCTTTTTCAAGACA
GCATTCACCACATGCGCCATAGCTGGGTGAAGCATGGCGCGGCGCCTGGA
CAAGTTTCGGTGGTTGGGCCGATGCCTGCACGTTGTGCTTGGCCGGGAAA
TTTATCTGCCTCGTCTTCACATTTCTTCCTTGGTGGACAGCACTTTGACT
ACTTCCCACCTCCTATGATGAGGACACTGCAACGTCGAGGGGTGGTCATC
AGCGCGTCAGGCACCGTTCCCCGTCTCGCCGCAGGAGCTTACATTACTGC
CTACTTAATCCGCAAAGTTTTTAATTCTGACTTGCCCATTGAAATTTACC
ACGTCGGTGAGCGCGAAGCTTTTGATCCTGAGCTTAAAACCCACCTTATT
GCCCTCGGTAATTTGCAAGTCCTCGACCTGGTGGTGGTTCTACGGGACAA
ATTCGGCACCGCCGTAAGTCAAGCTGGAGCCAAGGCAGCTAGGGCTGATG
CCGCAAAACAAATGGCCGGGGAAGGTAGAAGAACTGACGACGAGGAGGAA
TACGAGACCCCGCAGCGAGGTGGGGAGCAGACTGTCGACGCCGATAGCCA
CCTCTATTATCTCATGCCTTCGATCAGGCAGCTTGCTTCTTATGCGGCCA
AACCTTACACCGTTCTTGCGTCATCCTTCCAAGAAAATGTGCTCTTTGAC
GCAGGAGCTGTCCCGTTCCTAGACCCGGAGATGCTTTTAAGCTTGGCTGA
CTACACGGAGTTGGGCTTTGCAGATTTTCGAGATTATGTCCCTTCGTCTT
CGCACAAGTGGGACTGGATTCCTGAAGAGTTTTGTGTTGATACGGATGCA
GTGGTTGAGTACTATCGGGGCACGGAAGGTGACAGCAGCTGTGTCCTCTT
TGATAAGGCCCGAAATTGGGACGCGTTGCTTGTGACTGCAATTTTGAACG
GGCCCTTGCAACATATTACGTACAACAAAATGAATGGGGATAAAGACACC
TGGGTTATGGCGTTGTCCTATACGCGACAGGGGAAACTTCCACCACTACG
CACGCTGCCGGGCTTTCTCTTCATCGATTACGAGGGAAATGGTGAAGCAA
GGAAGATTCACGGGCAGTTGCAACTTCTCAAGGTGGGCATGGACGGGGGC
GATGAATACATGATGGGCGCCAAGGCCCTCTGGCAGGCGCCGCCAATTGA
TGCCAAGGGTTTTTTAATTCCGCTTTATTTTAATAACCAGCTGTTCAATT
TTACGCAATGGGAGTATAACAAGGGCTGGACCTATATCGGCAGCTATGAT
GACTACGGCTCGCTCTACAATCCGCCCACATCCCTGTCGCCCGACTGCCG
CCCCGTGCCTGTGGACGGCCTGGACCCACTAGTAGCGCCCATGGAAATCG
CCTTTGACGGGGTGGTGGAGGCCTTGAGGGCCATAAACTCGACACATTGC
GGATGTCGGGATGATTGGCCTACGGCGTGTGTGACATTTGTATACTAAAT
GACGGGTGTCATAGACAGCAGAAATGCTGTGGTACGTAGGCATAGTTTTA
CAGACAACGAGGAGCGGAAGGAAGGCGGGGGGGGCGCCTCAACCATACTG
CAAATTGGGATTGAAGCAGAAGACGAGGCACCTTTCCTGGCCGGACCTGC
TGCGCGTCGCGGCCGCCGCAGCAGCGCTTCCATGGCTTGGCTGGGCCTCC
GCTACCTGCTCACATGGCGGAACATGCTGATTGTGAAAGTGGGAAGCGTA
ATCCTTTTCATGCTAACTCGAGCGTACGTCTCTCGTCGAGATCCGCCGCA
AAATTACTCTCACGTGCACGCGTCGCCACGGCATGCAGCAGCGCAGCAGC
AGAATCAGCAGAGTCAGCAGAACCGGCAGCAGCAGCAGCAGCAGCGACGA
CAACAACCACAAGACCAACAGCACCAAAGGCGTCCGGAGGTGTACAAGCT
TCAGCCAGGAATGTGGAGCCGCAGCTACAAGCTTTTTCAAGACAGCATTC
ACCACATGCGCCATAGCTGGGTGAAGCATGGCGCGGCGCCTGGACAAGTT
TCGGTGGTTGGGCCGATGCCTGCACGTTGTGCTTGGCCGGGAAATTTATC
TGCCTCGTCTTCACATTTCTTCCTTGGTGGACAGCACTTTGACTACTTCC
CACCTCCTATGATGAGGACACTGCAACGTCGAGGGGTGGTCATCAGCGCG
TCAGGCACCGTTCCCCGTCTCGCCGCAGGAGCTTACATTACTGCCTACTT
AATCCGCAAAGTTTTTAATTCTGACTTGCCCATTGAAATTTACCACGTCG
GTGAGCGCGAAGCTTTTGATCCTGAGCTTAAAACCCACCTTATTGCCCTC
GGTAATTTGCAAGTCCTCGACCTGGTGGTGGTTCTACGGGACAAATTCGG
CACCGCCGTAAGTCAAGCTGGAGCCAAGGCAGCTAGGGCTGATGCCGCAA
AACAAATGGCCGGGGAAGGTAGAAGAACTGACGACGAGGAGGAATACGAG
ACCCCGCAGCGAGGTGGGGAGCAGACTGTCGACGCCGATAGCCACCTCTA
TTATCTCATGCCTTCGATCAGGCAGCTTGCTTCTTATGCGGCCAAACCTT
ACACCGTTCTTGCGTCATCCTTCCAAGAAAATGTGCTCTTTGACGCAGGA
GCTGTCCCGTTCCTAGACCCGGAGATGCTTTTAAGCTTGGCTGACTACAC
GGAGTTGGGCTTTGCAGATTTTCGAGATTATGTCCCTTCGTCTTCGCACA
AGTGGGACTGGATTCCTGAAGAGTTTTGTGTTGATACGGATGCAGTGGTT
GAGTACTATCGGGGCACGGAAGGTGACAGCAGCTGTGTCCTCTTTGATAA
GGCCCGAAATTGGGACGCGTTGCTTGTGACTGCAATTTTGAACGGGCCCT
TGCAACATATTACGTACAACAAAATGAATGGGGATAAAGACACCTGGGTT
ATGGCGTTGTCCTATACGCGACAGGGGAAACTTCCACCACTACGCACGCT
GCCGGGCTTTCTCTTCATCGATTACGAGGGAAATGGTGAAGCAAGGAAGA
TTCACGGGCAGTTGCAACTTCTCAAGGTGGGCATGGACGGGGGCGATGAA
TACATGATGGGCGCCAAGGCCCTCTGGCAGGCGCCGCCAATTGATGCCAA
GGGTTTTTTAATTCCGCTTTATTTTAATAACCAGCTGT back to top
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