jgi.p|Nanoce1779_2|551487, mRNA_1904 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|551487
Unique Name	mRNA_1904
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1013
Alignment location	scaffold_4:310186..311579 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	551573
Track	FilteredModels2
ProteinId	551487

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:310186..311579 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551487	gene_1904	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551487	mRNA_1904-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1904	CDS_1904	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:310186..311579+
coding sequence from alignment at scaffold_4:310186..311579+

mRNA sequence

>mRNA_1904 ID=mRNA_1904|Name=jgi.p|Nanoce1779_2|551487|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp
AGAGAAAGCAAGCATGGACATGGTCAGCAGCCGCAGGAGCAGTTCAAGCT
ACAGTCGCTGCCAGACTTAACAGGGCTGGCACCGCGGTCGTGTTCGAGTG
TGGCCCGCGGGGTGCAGCCTGCATCAACGGTCAGTCGCAAAGGATATCAC
GCATCCAACTACCAGCCGTAGCCATGGGGAAGAAACGCAAATCCCAACCC
GTAGTGGAGGTCGTTAAAAGCCGGAAACGCGCCCGCAAAATCGTGACTCA
ATTCCACAAAGTGAACGATGCTATTGCGGTGCTCGAGGAGAACGCCAGCT
TGGCCCCAGCCGAAAAAGAGGCGACCCGCAAGGAGCTGGAAGGTAACCTA
GAAGCTCTCGGTGGCCGCGCCGCCTACCAGTCCGCCTCTCAACTCTCCGT
CTCCTTCCACAACACCAGCAAGTGGGTCCTCGCCCGCTTGCAAGCCATGG
GTGTTCTCGCGCCCAAGCCTTCTTCCACCTCCTCAAAGCTCCGCCTCTTG
GAGGTTGGCGCCATCACCACCACCCTCCTCGATTGCCCCGCTCTCGAGAC
CACCGCCATCGACCTCCTCTCCCGCCACGCCCGGATTCGACAACAAGATT
TTTTCACCCTCCCCCTTCCTCCCTCACTTACCTTCCACGTTATCGTCTCC
TCTATGGTGATCAATTCTCTCCCCACTCCTGTTTCCCGTGGCCTCTTTCT
CCGACGCTGCCACTCCTATCTCCAGCCACACACCGGCCACCTGTTCCTCA
TGCTTCCTTCATCGTGCCTGACGCACTCTAAAAACATCACGACGGCCAAG
TTTCGTTTAATGTTGACAGAAAACATAGGGTTTAGAATCATGGAAGAGCG
GTGGACTCCCAAGGTGGCTTATTTTGTGTTGCGGGCAGAAGACGGAAAGG
TGGAGAGAATACGGGGAAGTGAAGGAGAAGGGAAAGGAGGAGGAAAAGCG
GGTGGACGGCGGGAGAGGAAAGCGTCTTCGTCATGGGCGAAGAATTTCGA
TGTTGTGTTATAG

protein sequence of jgi.p|Nanoce1779_2|551487

>mRNA_1904-protein ID=mRNA_1904-protein|Name=jgi.p|Nanoce1779_2|551487|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MGKKRKSQPVVEVVKSRKRARKIVTQFHKVNDAIAVLEENASLAPAEKEA
TRKELEGNLEALGGRAAYQSASQLSVSFHNTSKWVLARLQAMGVLAPKPS
STSSKLRLLEVGAITTTLLDCPALETTAIDLLSRHARIRQQDFFTLPLPP
SLTFHVIVSSMVINSLPTPVSRGLFLRRCHSYLQPHTGHLFLMLPSSCLT
HSKNITTAKFRLMLTENIGFRIMEERWTPKVAYFVLRAEDGKVERIRGSE
GEGKGGGKAGGRRERKASSSWAKNFDVVL*

mRNA from alignment at scaffold_4:310186..311579+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1904 ID=mRNA_1904|Name=jgi.p|Nanoce1779_2|551487|organism=Nannochloropsis oceanica|type=mRNA|length=1394bp|location=Sequence derived from alignment at scaffold_4:310186..311579+ (Nannochloropsis oceanica)
AGAGAAAGCAAGCATGGACATGGTCAGCAGCCGCAGGAGCAGTTCAAGCT
ACAGTCGCTGCCAGACTTAACAGGGCTGGCACCGCGGTCGTGTTCGAGTG
TGGCCCGCGGGGTGCAGCCTGCATCAACGGTCAGTCGCAAAGGATATCAC
GCATCCAACTACCAGCCGTAGCCATGGGGAAGAAACGCAAATCCCAACCC
GTAGTGGAGGTCGTTAAAAGTCAGTTTATGGGCGGCCTGTCTAGTCCAGA
TCCCGCGGCGTGGCGCATTGTGTATGATTTGTGTATTGTGTGTGTCCACC
CAAAAAACTCCCACCTACCCCTCCCTCCAACCCCATCCTCTCAACCAGCC
TCTGGCTCATCTCAACGAACCTCGATCCACAAAAACAGGCCGGAAACGCG
CCCGCAAAATCGTGACTCAATTCCACAAAGTGAACGATGCTATTGCGGTG
CTCGAGGAGAACGCCAGCTTGGCCCCAGCCGAAAAAGAGGCGACCCGCAA
GGAGTAAGTAAGTTCCCATTCCACGAAGTCGGGAAAGTTGGCCTCTTTGC
CTCTGCCTTGCATGCTCTCCCCAAATCATTATTAGCTTATCTTCCTGATA
TAGAAGACCTGAACCGCTCACCATTCCCCTTCACTTCATGTCACACATCA
CAACCCTTTTTTAAAAAATATCAAAGGCTGGAAGGTAACCTAGAAGCTCT
CGGTGGCCGCGCCGCCTACCAGTCCGCCTCTCAACTCTCCGTCTCCTTCC
ACAACACCAGCAAGTGGGTCCTCGCCCGCTTGCAAGCCATGGGTGTTCTC
GCGCCCAAGCCTTCTTCCACCTCCTCGTCGTCGTCCTCTTCCTCCGTCCC
TCCCGTCCGTCAAAGAAAGCTCCGCCTCTTGGAGGTTGGCGCCATCACCA
CCACCCTCCTCGATTGCCCCGCTCTCGAGACCACCGCCATCGACCTCCTC
TCCCGCCACGCCCGGATTCGACAACAAGATTTTTTCACCCTCCCCCTTCC
TCCCTCACTTACCTTCCACGTTATCGTCTCCTCTATGGTGATCAATTCTC
TCCCCACTCCTGTTTCCCGTGGCCTCTTTCTCCGACGCTGCCACTCCTAT
CTCCAGCCACACACCGGCCACCTGTTCCTCATGCTTCCTTCATCGTGCCT
GACGCACTCTAAAAACATCACGACGGCCAAGTTTCGTTTAATGTTGACAG
AAAACATAGGGTTTAGAATCATGGAAGAGCGGTGGACTCCCAAGGTGGCT
TATTTTGTGTTGCGGGCAGAAGACGGAAAGGTGGAGAGAATACGGGGAAG
TGAAGGAGAAGGGAAAGGAGGAGGAAAAGCGGGTGGACGGCGGGAGAGGA
AAGCGTCTTCGTCATGGGCGAAGAATTTCGATGTTGTGTTATAG

Coding sequence (CDS) from alignment at scaffold_4:310186..311579+

>mRNA_1904 ID=mRNA_1904|Name=jgi.p|Nanoce1779_2|551487|organism=Nannochloropsis oceanica|type=CDS|length=3360bp|location=Sequence derived from alignment at scaffold_4:310186..311579+ (Nannochloropsis oceanica)
ATGGGGAAGAAACGCAAATCCCAACCCGTAGTGGAGGTCGTTAAAAGCCG
GAAACGCGCCCGCAAAATCGTGACTCAATTCCACAAAGTGAACGATGCTA
TTGCGGTGCTCGAGGAGAACGCCAGCTTGGCCCCAGCCGAAAAAGAGGCG
ACCCGCAAGGAGCTGGAAGGTAACCTAGAAGCTCTCGGTGGCCGCGCCGC
CTACCAGTCCGCCTCTCAACTCTCCGTCTCCTTCCACAACACCAGCAAGT
GGGTCCTCGCCCGCTTGCAAGCCATGGGTGTTCTCGCGCCCAAGCCTTCT
TCCACCTCCTCAAAGCTCCGCCTCTTGGAGGTTGGCGCCATCACCACCAC
CCTCCTCGATTGCCCCGCTCTCGAGACCACCGCCATCGACCTCCTCTCCC
GCCACGCCCGGATTCGACAACAAGATTTTTTCACCCTCCCCCTTCCTCCC
TCACTTACCTTCCACGTTATCGTCTCCTCTATGGTGATCAATTCTCTCCC
CACTCCTGTTTCCCGTGGCCTCTTTCTCCGACGCTGCCACTCCTATCTCC
AGCCACACACCGGCCACCTGTTCCTCATGCTTCCTTCATCGTGCCTGACG
CACTCTAAAAACATCACGACGGCCAAGTTTCGTTTAATGTTGACAGAAAA
CATAGGGTTTAGAATCATGGAAGAGCGGTGGACTCCCAAGGTGGCTTATT
TTGTGTTGCGGGCAGAAGACGGAAAGGTGGAGAGAATACGGGGAAGTGAA
GGAGAAGGGAAAGGAGGAGGAAAAGCGGGTGGACGGCGGGAGAGGAAAGC
GTCTTCGTCATGGGCGAAGAATTTCGATGTTGTGTTATAGATGGGGAAGA
AACGCAAATCCCAACCCGTAGTGGAGGTCGTTAAAAGCCGGAAACGCGCC
CGCAAAATCGTGACTCAATTCCACAAAGTGAACGATGCTATTGCGGTGCT
CGAGGAGAACGCCAGCTTGGCCCCAGCCGAAAAAGAGGCGACCCGCAAGG
AGCTGGAAGGTAACCTAGAAGCTCTCGGTGGCCGCGCCGCCTACCAGTCC
GCCTCTCAACTCTCCGTCTCCTTCCACAACACCAGCAAGTGGGTCCTCGC
CCGCTTGCAAGCCATGGGTGTTCTCGCGCCCAAGCCTTCTTCCACCTCCT
CAAAGCTCCGCCTCTTGGAGGTTGGCGCCATCACCACCACCCTCCTCGAT
TGCCCCGCTCTCGAGACCACCGCCATCGACCTCCTCTCCCGCCACGCCCG
GATTCGACAACAAGATTTTTTCACCCTCCCCCTTCCTCCCTCACTTACCT
TCCACGTTATCGTCTCCTCTATGGTGATCAATTCTCTCCCCACTCCTGTT
TCCCGTGGCCTCTTTCTCCGACGCTGCCACTCCTATCTCCAGCCACACAC
CGGCCACCTGTTCCTCATGCTTCCTTCATCGTGCCTGACGCACTCTAAAA
ACATCACGACGGCCAAGTTTCGTTTAATGTTGACAGAAAACATAGGGTTT
AGAATCATGGAAGAGCGGTGGACTCCCAAGGTGGCTTATTTTGTGTTGCG
GGCAGAAGACGGAAAGGTGGAGAGAATACGGGGAAGTGAAGGAGAAGGGA
AAGGAGGAGGAAAAGCGGGTGGACGGCGGGAGAGGAAAGCGTCTTCGTCA
TGGGCGAAGAATTTCGATGTTGTGTTATAGATGGGGAAGAAACGCAAATC
CCAACCCGTAGTGGAGGTCGTTAAAAGCCGGAAACGCGCCCGCAAAATCG
TGACTCAATTCCACAAAGTGAACGATGCTATTGCGGTGCTCGAGGAGAAC
GCCAGCTTGGCCCCAGCCGAAAAAGAGGCGACCCGCAAGGAGCTGGAAGG
TAACCTAGAAGCTCTCGGTGGCCGCGCCGCCTACCAGTCCGCCTCTCAAC
TCTCCGTCTCCTTCCACAACACCAGCAAGTGGGTCCTCGCCCGCTTGCAA
GCCATGGGTGTTCTCGCGCCCAAGCCTTCTTCCACCTCCTCAAAGCTCCG
CCTCTTGGAGGTTGGCGCCATCACCACCACCCTCCTCGATTGCCCCGCTC
TCGAGACCACCGCCATCGACCTCCTCTCCCGCCACGCCCGGATTCGACAA
CAAGATTTTTTCACCCTCCCCCTTCCTCCCTCACTTACCTTCCACGTTAT
CGTCTCCTCTATGGTGATCAATTCTCTCCCCACTCCTGTTTCCCGTGGCC
TCTTTCTCCGACGCTGCCACTCCTATCTCCAGCCACACACCGGCCACCTG
TTCCTCATGCTTCCTTCATCGTGCCTGACGCACTCTAAAAACATCACGAC
GGCCAAGTTTCGTTTAATGTTGACAGAAAACATAGGGTTTAGAATCATGG
AAGAGCGGTGGACTCCCAAGGTGGCTTATTTTGTGTTGCGGGCAGAAGAC
GGAAAGGTGGAGAGAATACGGGGAAGTGAAGGAGAAGGGAAAGGAGGAGG
AAAAGCGGGTGGACGGCGGGAGAGGAAAGCGTCTTCGTCATGGGCGAAGA
ATTTCGATGTTGTGTTATAGATGGGGAAGAAACGCAAATCCCAACCCGTA
GTGGAGGTCGTTAAAAGCCGGAAACGCGCCCGCAAAATCGTGACTCAATT
CCACAAAGTGAACGATGCTATTGCGGTGCTCGAGGAGAACGCCAGCTTGG
CCCCAGCCGAAAAAGAGGCGACCCGCAAGGAGCTGGAAGGTAACCTAGAA
GCTCTCGGTGGCCGCGCCGCCTACCAGTCCGCCTCTCAACTCTCCGTCTC
CTTCCACAACACCAGCAAGTGGGTCCTCGCCCGCTTGCAAGCCATGGGTG
TTCTCGCGCCCAAGCCTTCTTCCACCTCCTCAAAGCTCCGCCTCTTGGAG
GTTGGCGCCATCACCACCACCCTCCTCGATTGCCCCGCTCTCGAGACCAC
CGCCATCGACCTCCTCTCCCGCCACGCCCGGATTCGACAACAAGATTTTT
TCACCCTCCCCCTTCCTCCCTCACTTACCTTCCACGTTATCGTCTCCTCT
ATGGTGATCAATTCTCTCCCCACTCCTGTTTCCCGTGGCCTCTTTCTCCG
ACGCTGCCACTCCTATCTCCAGCCACACACCGGCCACCTGTTCCTCATGC
TTCCTTCATCGTGCCTGACGCACTCTAAAAACATCACGACGGCCAAGTTT
CGTTTAATGTTGACAGAAAACATAGGGTTTAGAATCATGGAAGAGCGGTG
GACTCCCAAGGTGGCTTATTTTGTGTTGCGGGCAGAAGACGGAAAGGTGG
AGAGAATACGGGGAAGTGAAGGAGAAGGGAAAGGAGGAGGAAAAGCGGGT
GGACGGCGGGAGAGGAAAGCGTCTTCGTCATGGGCGAAGAATTTCGATGT
TGTGTTATAG

Synonyms

Publications