jgi.p|Nanoce1779_2|288660, mRNA_1903 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|288660
Unique NamemRNA_1903
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length715
Alignment locationscaffold_4:309737..310630 +

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Properties
Property NameValue
TranscriptId288746
TrackFilteredModels2
ProteinId288660
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:309737..310630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|288660gene_1903Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|288660mRNA_1903-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1903CDS_1903Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1903 ID=mRNA_1903|Name=jgi.p|Nanoce1779_2|288660|organism=Nannochloropsis oceanica|type=mRNA|length=715bp
CTGCGCCGTCGTCCTCGCTAGAGCTGTCGGTGTAATCGCTCTCCTCATCA
TCGCTGCTCACCGCCATGGCCGCGTCCGTACGTGCAGGCCCACACTTTGT
CTATTTTTTCCATGTTTGCGTGTAGGTCGTGTTATAGCTTGGTAAAATTA
AGTGCTGTGGACGCATCAGAAAGGGGGAGAGACGGACCCGGCGATGCGGC
GATCGTAGGCCGACAACGCTTATATAGCTTCAACTAAAAGGCTGAAGGAA
AGTCTCCATGATGCACCTTATCATGCTAATTCTGCATGGGGCAATACCTC
ACGTGATTACAGAAATATACATCCTTACTCGTCCTCCTGGACGAAGGGGA
CTGAGAGACTTCCCTTCCTTTTTGTGCTGCTTCGTGATGATGGGCTGCGA
CGAGCCCGCTCTGTTCTCACTCTGCCCATCCACACCCACCACACACACAA
GAGAAAGCAAGCATGGACATGGTCAGCAGCCGCAGGAGCAGTTCAAGCTA
CAGTCGCTGCCAGACTTAACAGGGCTGGCACCGCGGTCGTGTTCGAGTGT
GGCCCGCGGGGTGCAGCCTGCATCAACGGTCAGTCGCAAAGGATATCACG
CATCCAACTACCAGCCGTAGCCATGGGGAAGAAACGCAAATCCCAACCCG
TAGTGGAGGCCGGAAACGCGCCCGCAAAATCGTGACTCAATTCCACAAAG
TGAACGATGCTATTG
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protein sequence of jgi.p|Nanoce1779_2|288660

>mRNA_1903-protein ID=mRNA_1903-protein|Name=jgi.p|Nanoce1779_2|288660|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MMHLIMLILHGAIPHVITEIYILTRPPGRRGLRDFPSFLCCFVMMGCDEP
ALFSLCPSTPTTHTRESKHGHGQQPQEQFKLQSLPDLTGLAPRSCSSVAR
GVQPASTVSRKGYHASNYQP*
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mRNA from alignment at scaffold_4:309737..310630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1903 ID=mRNA_1903|Name=jgi.p|Nanoce1779_2|288660|organism=Nannochloropsis oceanica|type=mRNA|length=894bp|location=Sequence derived from alignment at scaffold_4:309737..310630+ (Nannochloropsis oceanica)
CTGCGCCGTCGTCCTCGCTAGAGCTGTCGGTGTAATCGCTCTCCTCATCA
TCGCTGCTCACCGCCATGGCCGCGTCCGTACGTGCAGGCCCACACTTTGT
CTATTTTTTCCATGTTTGCGTGTAGGTCGTGTTATAGCTTGGTAAAATTA
AGTGCTGTGGACGCATCAGAAAGGGGGAGAGACGGACCCGGCGATGCGGC
GATCGTAGGCCGACAACGCTTATATAGCTTCAACTAAAAGGCTGAAGGAA
AGTCTCCATGATGCACCTTATCATGCTAATTCTGCATGGGGCAATACCTC
ACGTGATTACAGAAATATACATCCTTACTCGTCCTCCTGGACGAAGGGGA
CTGAGAGACTTCCCTTCCTTTTTGTGCTGCTTCGTGATGATGGGCTGCGA
CGAGCCCGCTCTGTTCTCACTCTGCCCATCCACACCCACCACACACACAA
GAGAAAGCAAGCATGGACATGGTCAGCAGCCGCAGGAGCAGTTCAAGCTA
CAGTCGCTGCCAGACTTAACAGGGCTGGCACCGCGGTCGTGTTCGAGTGT
GGCCCGCGGGGTGCAGCCTGCATCAACGGTCAGTCGCAAAGGATATCACG
CATCCAACTACCAGCCGTAGCCATGGGGAAGAAACGCAAATCCCAACCCG
TAGTGGAGGTCGTTAAAAGTCAGTTTATGGGCGGCCTGTCTAGTCCAGAT
CCCGCGGCGTGGCGCATTGTGTATGATTTGTGTATTGTGTGTGTCCACCC
AAAAAACTCCCACCTACCCCTCCCTCCAACCCCATCCTCTCAACCAGCCT
CTGGCTCATCTCAACGAACCTCGATCCACAAAAACAGGCCGGAAACGCGC
CCGCAAAATCGTGACTCAATTCCACAAAGTGAACGATGCTATTG
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Coding sequence (CDS) from alignment at scaffold_4:309737..310630+

>mRNA_1903 ID=mRNA_1903|Name=jgi.p|Nanoce1779_2|288660|organism=Nannochloropsis oceanica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_4:309737..310630+ (Nannochloropsis oceanica)
ATGATGCACCTTATCATGCTAATTCTGCATGGGGCAATACCTCACGTGAT
TACAGAAATATACATCCTTACTCGTCCTCCTGGACGAAGGGGACTGAGAG
ACTTCCCTTCCTTTTTGTGCTGCTTCGTGATGATGGGCTGCGACGAGCCC
GCTCTGTTCTCACTCTGCCCATCCACACCCACCACACACACAAGAGAAAG
CAAGCATGGACATGGTCAGCAGCCGCAGGAGCAGTTCAAGCTACAGTCGC
TGCCAGACTTAACAGGGCTGGCACCGCGGTCGTGTTCGAGTGTGGCCCGC
GGGGTGCAGCCTGCATCAACGGTCAGTCGCAAAGGATATCACGCATCCAA
CTACCAGCCGTAG
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Synonyms
Publications