jgi.p|Nanoce1779_2|636983, mRNA_1902 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636983
Unique NamemRNA_1902
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1329
Alignment locationscaffold_4:307998..309674 -

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Properties
Property NameValue
TranscriptId637069
TrackFilteredModels2
ProteinId636983
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:307998..309674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636983gene_1902Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636983mRNA_1902-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1902CDS_1902Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1902 ID=mRNA_1902|Name=jgi.p|Nanoce1779_2|636983|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp
ATGGTGATTGATTCGGACGATGCAGGAAAATTTATTGAGAGTGGGTCGCA
CGTCATGTTCTCCGTCCAATTGGAGGAAGCGTTCTCGCTGCACGTCGAGC
GGGAGGTAGCAGCAGCAGCGACAGCAGCTGCAGCACAGACGAAGATGGGA
AAGAAAGCAGCAGCAACAGCTAAGAGTTTCGTGGCCCTATATCGAGAAAA
GGCCGCCGTATTAGTGTCACGCTTGAGGTTTAGCAGGAAGAAAAAGCTGG
CGAAGCTGGTGAGGGGGAAGGAATGGGGGAAGATTGCAAGTAAGTACTCC
AAGGTGGGGGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGATGGTGC
TGCTGAGGATGTAAAGAAAAAGACGAAAAAGGGGAATGCAGCAGTAGCAG
GTGGAGGAGGAAGAGATACACCGTTGAAAAGAGGGAGGGGAAGGCCAAAG
AGTGCCCCAGCAGGTGTAGCAGCAGCAGCAGAAGGAGGATCGTCATCAGC
AGCAGCAGCAGCAGCAGCAGCAGGAGCAGGAGGAGAGGGGGGACGAGGAA
GACGAGGTGGAAAGATGGAGCCGGGGAAAGGTGGAAAGACAAAGGTGGCT
CATGGGGGGGAGGGGAAGAAGAGGAGGAAGGCTGGTAATGGCGTGGAAGG
TAACAGCGAGGACGAGGAGCACAGGGAAGCGGGGGAGGGGGCAGTCGGAC
CACGGGCGAAGAAGACAAAGTGGGGTGCTGGCAGTGGAGGCAGAAAGGGT
GCCAAGGCAGGAGCAGGAGCAGGAATAGTCGTCAGGCCTGAGAGCAGCAG
CTCTACCGGAGGAGGAGGAGCGGGGGAAGGAGGAGGGGTGAAGGAGCCGC
TCATTCCTTTAGCTCGTTCTGCCAAAATGCTCCCACTTCCCACTAAGCCG
GCCGCTCCTGCTGCTGCTCCTGCTACTGCTACTGCCGCTATTGGAGCGGA
GAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCT
CACAGTAACGGTGGCGCCGGTGGCACAAGGCTCGTCTAGCGGCCAAGGAG
GAGGAGAGGAGAAAACAACTCCAGATTAG
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protein sequence of jgi.p|Nanoce1779_2|636983

>mRNA_1902-protein ID=mRNA_1902-protein|Name=jgi.p|Nanoce1779_2|636983|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp
MVIDSDDAGKFIESGSHVMFSVQLEEAFSLHVEREVAAAATAAAAQTKMG
KKAAATAKSFVALYREKAAVLVSRLRFSRKKKLAKLVRGKEWGKIASKYS
KVGGKEGGKEGGKEDGAAEDVKKKTKKGNAAVAGGGGRDTPLKRGRGRPK
SAPAGVAAAAEGGSSSAAAAAAAAGAGGEGGRGRRGGKMEPGKGGKTKVA
HGGEGKKRRKAGNGVEGNSEDEEHREAGEGAVGPRAKKTKWGAGSGGRKG
AKAGAGAGIVVRPESSSSTGGGGAGEGGGVKEPLIPLARSAKMLPLPTKP
AAPAAAPATATAAIGAEKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
EEEEEEEEEEEEEEEELTVTVAPVAQGSSSGQGGGEEKTTPD*
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mRNA from alignment at scaffold_4:307998..309674-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1902 ID=mRNA_1902|Name=jgi.p|Nanoce1779_2|636983|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp|location=Sequence derived from alignment at scaffold_4:307998..309674- (Nannochloropsis oceanica)
ATGGTGATTGATTCGGACGATGCAGGAGTAGGAGAGGGGGAAGGCGAAGA
GGAGGAGGAGGAGGACGAGGAAGAAGAGGAAGAAGAGGAACGGGAAGAAG
GGGGGGGGAGGGGGGGAGGTGGACGATCAACGGATACGCCTGACGCGGCA
ATTGGGCAAACTCTTGCAGAAATTTATTGAGAGTGGGTCGCACGTCATGT
TCTCCGTCCAATTGGAGGAAGCGTTCTCGCTGCACGTCGAGCGGGAGGTA
GCAGCAGCAGCGACAGCAGCTGCAGCACAGACGAAGATGGGAAAGAAAGC
AGCAGCAACAGCTAAGAGTTTCGTGGCCCTATATCGAGAAAAGGCCGCCG
TATTAGTGTCACGCTTGAGGTTTAGCAGGAAGAAAAAGCTGGCGAAGCTG
GTGAGGGGGAAGGAATGGGGGAAGATTGCAAGTAAGTACTCCAAGGTGGG
GGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGATGGTGCTGCTGAGG
ATGTAAAGAAAAAGACGAAAAAGGGGAATGCAGCAGTAGCAGGTGGAGGA
GGAAGAGATACACCGTTGAAAAGAGGGAGGGGAAGGCCAAAGAGTGCCCC
AGCAGGTGTAGCAGCAGCAGCAGAAGGAGGATCGTCATCAGCAGCAGCAG
CAGCAGCAGCAGCAGGAGCAGGAGGAGAGGGGGGACGAGGAAGACGAGGT
GGAAAGATGGAGCCGGGGAAAGGTGGAAAGACAAAGGTGGCTCATGGGGG
GGAGGGGAAGAAGAGGAGGAAGGCTGGTAATGGCGTGGAAGGTAACAGCG
AGGACGAGGAGCACAGGGAAGCGGGGGAGGGGGCAGTCGGACCACGGGCG
AAGAAGACAAAGTGGGGTGCTGGCAGTGGAGGCAGAAAGGGTGCCAAGGC
AGGAGCAGGAGCAGGAATAGTCGTCAGGCCTGAGAGCAGCAGCTCTACCG
GAGGAGGAGGAGCGGGGGAAGGAGGAGGGGTGAAGGAGCCGCTCATTCCT
TTAGCTCGTTCTGCCAAAATGCTCCCACTTCCCACTAAGCCGGCCGCTCC
TGCTGCTGCTCCTGCTACTGCTACTGCCGCTATTGGAGCGGTGGATAGGA
AGGGGATGGGCAGCAGGGGAGGCGGCAACAGCAGCACCAGTTTGTCGTCC
ATGGCAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGCTCACAGTAACGGTGGCGCCGGTGGTACTCCCCGCCACCCTCC
GTTCTACTCCTCCACCTCCACCACCACCACACATCACCTTAAGAGTAGCA
CGTCTTCCTCCTCCCCTATTCCTCCCCCTCCTCGGCGTCAACACGAAACG
GCTCGCGAACGCCAAGACAGGCACAAGGCTCGTCTAGCGGCCAAGGAGGA
GGAGAGGAGAAAACAACTCCAGATTAG
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Coding sequence (CDS) from alignment at scaffold_4:307998..309674-

>mRNA_1902 ID=mRNA_1902|Name=jgi.p|Nanoce1779_2|636983|organism=Nannochloropsis oceanica|type=CDS|length=5316bp|location=Sequence derived from alignment at scaffold_4:307998..309674- (Nannochloropsis oceanica)
GCACAAGGCTCGTCTAGCGGCCAAGGAGGAGGAGAGGAGAAAACAACTCC
AGATTAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGCTCACAGTAACGGTGGCGCCGGTGAAATTTATTGAGAGTGGGT
CGCACGTCATGTTCTCCGTCCAATTGGAGGAAGCGTTCTCGCTGCACGTC
GAGCGGGAGGTAGCAGCAGCAGCGACAGCAGCTGCAGCACAGACGAAGAT
GGGAAAGAAAGCAGCAGCAACAGCTAAGAGTTTCGTGGCCCTATATCGAG
AAAAGGCCGCCGTATTAGTGTCACGCTTGAGGTTTAGCAGGAAGAAAAAG
CTGGCGAAGCTGGTGAGGGGGAAGGAATGGGGGAAGATTGCAAGTAAGTA
CTCCAAGGTGGGGGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGATG
GTGCTGCTGAGGATGTAAAGAAAAAGACGAAAAAGGGGAATGCAGCAGTA
GCAGGTGGAGGAGGAAGAGATACACCGTTGAAAAGAGGGAGGGGAAGGCC
AAAGAGTGCCCCAGCAGGTGTAGCAGCAGCAGCAGAAGGAGGATCGTCAT
CAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGGAGGAGAGGGGGGACGA
GGAAGACGAGGTGGAAAGATGGAGCCGGGGAAAGGTGGAAAGACAAAGGT
GGCTCATGGGGGGGAGGGGAAGAAGAGGAGGAAGGCTGGTAATGGCGTGG
AAGGTAACAGCGAGGACGAGGAGCACAGGGAAGCGGGGGAGGGGGCAGTC
GGACCACGGGCGAAGAAGACAAAGTGGGGTGCTGGCAGTGGAGGCAGAAA
GGGTGCCAAGGCAGGAGCAGGAGCAGGAATAGTCGTCAGGCCTGAGAGCA
GCAGCTCTACCGGAGGAGGAGGAGCGGGGGAAGGAGGAGGGGTGAAGGAG
CCGCTCATTCCTTTAGCTCGTTCTGCCAAAATGCTCCCACTTCCCACTAA
GCCGGCCGCTCCTGCTGCTGCTCCTGCTACTGCTACTGCCGCTATTGGAG
CGATGGTGATTGATTCGGACGATGCAGGAGCACAAGGCTCGTCTAGCGGC
CAAGGAGGAGGAGAGGAGAAAACAACTCCAGATTAGGAGAAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTCACAGTAACGGT
GGCGCCGGTGAAATTTATTGAGAGTGGGTCGCACGTCATGTTCTCCGTCC
AATTGGAGGAAGCGTTCTCGCTGCACGTCGAGCGGGAGGTAGCAGCAGCA
GCGACAGCAGCTGCAGCACAGACGAAGATGGGAAAGAAAGCAGCAGCAAC
AGCTAAGAGTTTCGTGGCCCTATATCGAGAAAAGGCCGCCGTATTAGTGT
CACGCTTGAGGTTTAGCAGGAAGAAAAAGCTGGCGAAGCTGGTGAGGGGG
AAGGAATGGGGGAAGATTGCAAGTAAGTACTCCAAGGTGGGGGGGAAGGA
GGGAGGGAAGGAGGGAGGGAAGGAGGATGGTGCTGCTGAGGATGTAAAGA
AAAAGACGAAAAAGGGGAATGCAGCAGTAGCAGGTGGAGGAGGAAGAGAT
ACACCGTTGAAAAGAGGGAGGGGAAGGCCAAAGAGTGCCCCAGCAGGTGT
AGCAGCAGCAGCAGAAGGAGGATCGTCATCAGCAGCAGCAGCAGCAGCAG
CAGCAGGAGCAGGAGGAGAGGGGGGACGAGGAAGACGAGGTGGAAAGATG
GAGCCGGGGAAAGGTGGAAAGACAAAGGTGGCTCATGGGGGGGAGGGGAA
GAAGAGGAGGAAGGCTGGTAATGGCGTGGAAGGTAACAGCGAGGACGAGG
AGCACAGGGAAGCGGGGGAGGGGGCAGTCGGACCACGGGCGAAGAAGACA
AAGTGGGGTGCTGGCAGTGGAGGCAGAAAGGGTGCCAAGGCAGGAGCAGG
AGCAGGAATAGTCGTCAGGCCTGAGAGCAGCAGCTCTACCGGAGGAGGAG
GAGCGGGGGAAGGAGGAGGGGTGAAGGAGCCGCTCATTCCTTTAGCTCGT
TCTGCCAAAATGCTCCCACTTCCCACTAAGCCGGCCGCTCCTGCTGCTGC
TCCTGCTACTGCTACTGCCGCTATTGGAGCGATGGTGATTGATTCGGACG
ATGCAGGAGCACAAGGCTCGTCTAGCGGCCAAGGAGGAGGAGAGGAGAAA
ACAACTCCAGATTAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGCTCACAGTAACGGTGGCGCCGGTGAAATTTATTGA
GAGTGGGTCGCACGTCATGTTCTCCGTCCAATTGGAGGAAGCGTTCTCGC
TGCACGTCGAGCGGGAGGTAGCAGCAGCAGCGACAGCAGCTGCAGCACAG
ACGAAGATGGGAAAGAAAGCAGCAGCAACAGCTAAGAGTTTCGTGGCCCT
ATATCGAGAAAAGGCCGCCGTATTAGTGTCACGCTTGAGGTTTAGCAGGA
AGAAAAAGCTGGCGAAGCTGGTGAGGGGGAAGGAATGGGGGAAGATTGCA
AGTAAGTACTCCAAGGTGGGGGGGAAGGAGGGAGGGAAGGAGGGAGGGAA
GGAGGATGGTGCTGCTGAGGATGTAAAGAAAAAGACGAAAAAGGGGAATG
CAGCAGTAGCAGGTGGAGGAGGAAGAGATACACCGTTGAAAAGAGGGAGG
GGAAGGCCAAAGAGTGCCCCAGCAGGTGTAGCAGCAGCAGCAGAAGGAGG
ATCGTCATCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGGAGGAGAGG
GGGGACGAGGAAGACGAGGTGGAAAGATGGAGCCGGGGAAAGGTGGAAAG
ACAAAGGTGGCTCATGGGGGGGAGGGGAAGAAGAGGAGGAAGGCTGGTAA
TGGCGTGGAAGGTAACAGCGAGGACGAGGAGCACAGGGAAGCGGGGGAGG
GGGCAGTCGGACCACGGGCGAAGAAGACAAAGTGGGGTGCTGGCAGTGGA
GGCAGAAAGGGTGCCAAGGCAGGAGCAGGAGCAGGAATAGTCGTCAGGCC
TGAGAGCAGCAGCTCTACCGGAGGAGGAGGAGCGGGGGAAGGAGGAGGGG
TGAAGGAGCCGCTCATTCCTTTAGCTCGTTCTGCCAAAATGCTCCCACTT
CCCACTAAGCCGGCCGCTCCTGCTGCTGCTCCTGCTACTGCTACTGCCGC
TATTGGAGCGATGGTGATTGATTCGGACGATGCAGGAGCACAAGGCTCGT
CTAGCGGCCAAGGAGGAGGAGAGGAGAAAACAACTCCAGATTAGGAGAAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTCACA
GTAACGGTGGCGCCGGTGAAATTTATTGAGAGTGGGTCGCACGTCATGTT
CTCCGTCCAATTGGAGGAAGCGTTCTCGCTGCACGTCGAGCGGGAGGTAG
CAGCAGCAGCGACAGCAGCTGCAGCACAGACGAAGATGGGAAAGAAAGCA
GCAGCAACAGCTAAGAGTTTCGTGGCCCTATATCGAGAAAAGGCCGCCGT
ATTAGTGTCACGCTTGAGGTTTAGCAGGAAGAAAAAGCTGGCGAAGCTGG
TGAGGGGGAAGGAATGGGGGAAGATTGCAAGTAAGTACTCCAAGGTGGGG
GGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGATGGTGCTGCTGAGGA
TGTAAAGAAAAAGACGAAAAAGGGGAATGCAGCAGTAGCAGGTGGAGGAG
GAAGAGATACACCGTTGAAAAGAGGGAGGGGAAGGCCAAAGAGTGCCCCA
GCAGGTGTAGCAGCAGCAGCAGAAGGAGGATCGTCATCAGCAGCAGCAGC
AGCAGCAGCAGCAGGAGCAGGAGGAGAGGGGGGACGAGGAAGACGAGGTG
GAAAGATGGAGCCGGGGAAAGGTGGAAAGACAAAGGTGGCTCATGGGGGG
GAGGGGAAGAAGAGGAGGAAGGCTGGTAATGGCGTGGAAGGTAACAGCGA
GGACGAGGAGCACAGGGAAGCGGGGGAGGGGGCAGTCGGACCACGGGCGA
AGAAGACAAAGTGGGGTGCTGGCAGTGGAGGCAGAAAGGGTGCCAAGGCA
GGAGCAGGAGCAGGAATAGTCGTCAGGCCTGAGAGCAGCAGCTCTACCGG
AGGAGGAGGAGCGGGGGAAGGAGGAGGGGTGAAGGAGCCGCTCATTCCTT
TAGCTCGTTCTGCCAAAATGCTCCCACTTCCCACTAAGCCGGCCGCTCCT
GCTGCTGCTCCTGCTACTGCTACTGCCGCTATTGGAGCGATGGTGATTGA
TTCGGACGATGCAGGA
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Synonyms
Publications