jgi.p|Nanoce1779_2|578350, mRNA_1900 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578350
Unique NamemRNA_1900
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1505
Alignment locationscaffold_4:304031..305535 -

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Properties
Property NameValue
TranscriptId578436
TrackFilteredModels2
ProteinId578350
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:304031..305535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578350gene_1900Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578350mRNA_1900-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1900CDS_1900Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1900 ID=mRNA_1900|Name=jgi.p|Nanoce1779_2|578350|organism=Nannochloropsis oceanica|type=mRNA|length=1505bp
AGCCCCACAAAACACACACACACGTCCACTCCTCCAGACATGTCACGGCG
CATCGGTCAGCCAGTTAACCAGGTACGGCTGACAAACGTGGCCATGGTCC
GGATGCACAAGGGGGGAAAACGCTTCGAAATTGCCTGCTACCGCAATAAG
GTCTTGAGCTGGCGGCAGGGTGTAGAGACGGACATTGACGAGGTGCTCCA
AACGCACGCCATCTTTCTGAATGTGTCCAAGGGCGTGCTTGCTAGCAGCA
AGGACTTGATGGATTGCTTTGGCCAGGATAATGTGGAGGCGTTGCTGCGG
CAAATCTTGGAAAAGGGGGAGTACCATCCCTCGGACAAGGAGCGGGAAGC
CATGCTTGAAAGCACGTACAGGGACATTGCCACCATTGTGGCCGAGAAAA
GCGTAAATCCCGCGTCAAACCGGCCATATACCGTCAAAATGATTTTGAGT
GGGATGAAGGAGATCCATTTTGCGGTCAACCCCACGCGAAATGCGAAGCA
GCAAGCCTTGGAGGTCATCAAGAAGCTGCGAGACGTAATGCCCCTCGACC
GGGCCAAGATGCATTTACGAGCAGTCTGCCCCACTGCTGAGGACCTTGCA
GAGGTGGTAGCTGGGCTGCGGAAGATGGGAATCGATACAGCTGCGGCTGA
AGCGGCAGGGACGAGGCAGGAGATGGATTTATTGGTTGACCCGGGGGTGT
TTCGAAGTGTGGATGAGCTGGTGCGAGGGGCGGCGAGAGGATCGTTGCAA
GTGTTGGAGCTGAATGTGCAACAGGAAGGAGAGGCGGATGTGGATTTTGA
GATTGCGAGGAAGGAGATGATGAAGAGGCATCAGCAGGAGGAGATAGCGG
CCAAGGCGGTCAAAGCAGTGGAAGCGCGGGATGACGTGCAGGAGGAGAGT
GGAATGGAGAAGGAGGAGGATAAGGACGTACTGGAAGAGGGCGAAAAAGA
TGAGTGGAATGCATCGGGAGGTGGTGGGCGCGGGGATGCACGGGAGGAGG
AGGGGGAGGGGAAGAATGCGAAGAACAAGGGCAATAAAACATCCAAGGCG
GGCAAGCGGCGGGAGAAAGAGCGTCTGAAAGAGCGGGAGGTGCGGAAGCA
GCAAGATGCCGAGCGCCGACAGCAGCGAGAGAATGGAGACTCGACAGCTT
CCCTTGTTTCCACAACAATATCTAACACCTCTGGAGGTAGAGAAAAGATG
GTGTTGACATGGCAGAAAAAAAGCGCTGGGGGAACGCGCCTAGCGTGCAA
CACATGCCGGGTTGACTTCGATGATGCCAAGGGCTATCGGGAACATTACC
GCACAGACTGGCACCGGTACAATCTGAAGCTTAAGGAAAAGGGAGGCGGA
CCCGTAGGGGAAAAGGAGTTTGAGATTGTGGATGCGGATGAAATGTTCTT
CCAGGACCGGGGCGTATAAGTAAGCAAAACAAAGGTAGTATAGCCTATTT
TTTTGGGGGAAATGTAGAAATAGAACAAAGTAAATAGCTCAAGCTACATA
CCTGC
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protein sequence of jgi.p|Nanoce1779_2|578350

>mRNA_1900-protein ID=mRNA_1900-protein|Name=jgi.p|Nanoce1779_2|578350|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MSRRIGQPVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDID
EVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDK
EREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTR
NAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDT
AAAEAAGTRQEMDLLVDPGVFRSVDELVRGAARGSLQVLELNVQQEGEAD
VDFEIARKEMMKRHQQEEIAAKAVKAVEARDDVQEESGMEKEEDKDVLEE
GEKDEWNASGGGGRGDAREEEGEGKNAKNKGNKTSKAGKRREKERLKERE
VRKQQDAERRQQRENGDSTASLVSTTISNTSGGREKMVLTWQKKSAGGTR
LACNTCRVDFDDAKGYREHYRTDWHRYNLKLKEKGGGPVGEKEFEIVDAD
EMFFQDRGV*
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mRNA from alignment at scaffold_4:304031..305535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1900 ID=mRNA_1900|Name=jgi.p|Nanoce1779_2|578350|organism=Nannochloropsis oceanica|type=mRNA|length=1505bp|location=Sequence derived from alignment at scaffold_4:304031..305535- (Nannochloropsis oceanica)
AGCCCCACAAAACACACACACACGTCCACTCCTCCAGACATGTCACGGCG
CATCGGTCAGCCAGTTAACCAGGTACGGCTGACAAACGTGGCCATGGTCC
GGATGCACAAGGGGGGAAAACGCTTCGAAATTGCCTGCTACCGCAATAAG
GTCTTGAGCTGGCGGCAGGGTGTAGAGACGGACATTGACGAGGTGCTCCA
AACGCACGCCATCTTTCTGAATGTGTCCAAGGGCGTGCTTGCTAGCAGCA
AGGACTTGATGGATTGCTTTGGCCAGGATAATGTGGAGGCGTTGCTGCGG
CAAATCTTGGAAAAGGGGGAGTACCATCCCTCGGACAAGGAGCGGGAAGC
CATGCTTGAAAGCACGTACAGGGACATTGCCACCATTGTGGCCGAGAAAA
GCGTAAATCCCGCGTCAAACCGGCCATATACCGTCAAAATGATTTTGAGT
GGGATGAAGGAGATCCATTTTGCGGTCAACCCCACGCGAAATGCGAAGCA
GCAAGCCTTGGAGGTCATCAAGAAGCTGCGAGACGTAATGCCCCTCGACC
GGGCCAAGATGCATTTACGAGCAGTCTGCCCCACTGCTGAGGACCTTGCA
GAGGTGGTAGCTGGGCTGCGGAAGATGGGAATCGATACAGCTGCGGCTGA
AGCGGCAGGGACGAGGCAGGAGATGGATTTATTGGTTGACCCGGGGGTGT
TTCGAAGTGTGGATGAGCTGGTGCGAGGGGCGGCGAGAGGATCGTTGCAA
GTGTTGGAGCTGAATGTGCAACAGGAAGGAGAGGCGGATGTGGATTTTGA
GATTGCGAGGAAGGAGATGATGAAGAGGCATCAGCAGGAGGAGATAGCGG
CCAAGGCGGTCAAAGCAGTGGAAGCGCGGGATGACGTGCAGGAGGAGAGT
GGAATGGAGAAGGAGGAGGATAAGGACGTACTGGAAGAGGGCGAAAAAGA
TGAGTGGAATGCATCGGGAGGTGGTGGGCGCGGGGATGCACGGGAGGAGG
AGGGGGAGGGGAAGAATGCGAAGAACAAGGGCAATAAAACATCCAAGGCG
GGCAAGCGGCGGGAGAAAGAGCGTCTGAAAGAGCGGGAGGTGCGGAAGCA
GCAAGATGCCGAGCGCCGACAGCAGCGAGAGAATGGAGACTCGACAGCTT
CCCTTGTTTCCACAACAATATCTAACACCTCTGGAGGTAGAGAAAAGATG
GTGTTGACATGGCAGAAAAAAAGCGCTGGGGGAACGCGCCTAGCGTGCAA
CACATGCCGGGTTGACTTCGATGATGCCAAGGGCTATCGGGAACATTACC
GCACAGACTGGCACCGGTACAATCTGAAGCTTAAGGAAAAGGGAGGCGGA
CCCGTAGGGGAAAAGGAGTTTGAGATTGTGGATGCGGATGAAATGTTCTT
CCAGGACCGGGGCGTATAAGTAAGCAAAACAAAGGTAGTATAGCCTATTT
TTTTGGGGGAAATGTAGAAATAGAACAAAGTAAATAGCTCAAGCTACATA
CCTGC
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Coding sequence (CDS) from alignment at scaffold_4:304031..305535-

>mRNA_1900 ID=mRNA_1900|Name=jgi.p|Nanoce1779_2|578350|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_4:304031..305535- (Nannochloropsis oceanica)
ATGTCACGGCGCATCGGTCAGCCAGTTAACCAGGTACGGCTGACAAACGT
GGCCATGGTCCGGATGCACAAGGGGGGAAAACGCTTCGAAATTGCCTGCT
ACCGCAATAAGGTCTTGAGCTGGCGGCAGGGTGTAGAGACGGACATTGAC
GAGGTGCTCCAAACGCACGCCATCTTTCTGAATGTGTCCAAGGGCGTGCT
TGCTAGCAGCAAGGACTTGATGGATTGCTTTGGCCAGGATAATGTGGAGG
CGTTGCTGCGGCAAATCTTGGAAAAGGGGGAGTACCATCCCTCGGACAAG
GAGCGGGAAGCCATGCTTGAAAGCACGTACAGGGACATTGCCACCATTGT
GGCCGAGAAAAGCGTAAATCCCGCGTCAAACCGGCCATATACCGTCAAAA
TGATTTTGAGTGGGATGAAGGAGATCCATTTTGCGGTCAACCCCACGCGA
AATGCGAAGCAGCAAGCCTTGGAGGTCATCAAGAAGCTGCGAGACGTAAT
GCCCCTCGACCGGGCCAAGATGCATTTACGAGCAGTCTGCCCCACTGCTG
AGGACCTTGCAGAGGTGGTAGCTGGGCTGCGGAAGATGGGAATCGATACA
GCTGCGGCTGAAGCGGCAGGGACGAGGCAGGAGATGGATTTATTGGTTGA
CCCGGGGGTGTTTCGAAGTGTGGATGAGCTGGTGCGAGGGGCGGCGAGAG
GATCGTTGCAAGTGTTGGAGCTGAATGTGCAACAGGAAGGAGAGGCGGAT
GTGGATTTTGAGATTGCGAGGAAGGAGATGATGAAGAGGCATCAGCAGGA
GGAGATAGCGGCCAAGGCGGTCAAAGCAGTGGAAGCGCGGGATGACGTGC
AGGAGGAGAGTGGAATGGAGAAGGAGGAGGATAAGGACGTACTGGAAGAG
GGCGAAAAAGATGAGTGGAATGCATCGGGAGGTGGTGGGCGCGGGGATGC
ACGGGAGGAGGAGGGGGAGGGGAAGAATGCGAAGAACAAGGGCAATAAAA
CATCCAAGGCGGGCAAGCGGCGGGAGAAAGAGCGTCTGAAAGAGCGGGAG
GTGCGGAAGCAGCAAGATGCCGAGCGCCGACAGCAGCGAGAGAATGGAGA
CTCGACAGCTTCCCTTGTTTCCACAACAATATCTAACACCTCTGGAGGTA
GAGAAAAGATGGTGTTGACATGGCAGAAAAAAAGCGCTGGGGGAACGCGC
CTAGCGTGCAACACATGCCGGGTTGACTTCGATGATGCCAAGGGCTATCG
GGAACATTACCGCACAGACTGGCACCGGTACAATCTGAAGCTTAAGGAAA
AGGGAGGCGGACCCGTAGGGGAAAAGGAGTTTGAGATTGTGGATGCGGAT
GAAATGTTCTTCCAGGACCGGGGCGTATAA
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Synonyms
Publications