jgi.p|Nanoce1779_2|576490, mRNA_190 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576490
Unique NamemRNA_190
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2024
Alignment locationscaffold_3:477728..480011 -

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Properties
Property NameValue
TranscriptId576576
TrackFilteredModels2
ProteinId576490
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:477728..480011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576490gene_190Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576490mRNA_190-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_190CDS_190Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_190 ID=mRNA_190|Name=jgi.p|Nanoce1779_2|576490|organism=Nannochloropsis oceanica|type=mRNA|length=2024bp
ACAGGCACGCTACACCGTCATGTCGGTGCTGCTGGAGACGACGCTCGGGG
AGTTCGTGGTGGACCTGATGTGCGAAGAGTGTCCCTTGGCGGCGAAGAAT
TTCCTTAAGCTCTGCAAGGCAAAGTACTACAACAATGTCCTCATCTACAA
TGTGCAGCAGAACTTTATGATTCAGACGGGGGATCCCACGGGCACAGGCC
GCGGGGGTACGTCGATTTATGGCTTGTTGTACGGGGAGCAGGCCAAGTTC
TTCGAGGACGAGATCCGCCTGCCCCAGCTCAAGCACAACCGGCCCGGCTT
GGTGTGCATGGCCTCGGGTGGGGAGAATAAAAACACGTCGCAATTCTACA
TCACCATGCGGGGTGAAGATCTTGAATTTTTGGACGGGAAACACACAATA
TTCGGAGAAGTGGCTGAGGGCCTAGACACGGTCCTCAAAGACATGAACGA
GCTGTACTGTGATACGAACGGTCGGCCTTACCGGGACGTACGCATCCTTC
ATACCTACGTGCTCGAAGATCCGTTCATTGATCCCCCAGGCATGGCAGAC
TTGGTGCCTGCCGCCTCACCTTTGCGGGAACGGCCGATAGCAGAGACAGT
GAAGCCTCGGCTGATCGATTTGGTGGACGAAGAAGATGGGCTGACAGCCG
AGGCCTTGGACGAACGCATCCGAGAAGCGGAGGCAAAGAAGCGGGCAGTG
GTCCTGGAGATGATTGGTGACTTACCCGACGCGGAGATCAAGCCGCCAGA
AAATGTGCTCTTTGTGTGTAAACTTAATGCCATTACCACGGACGAGGATT
TGGAAATTATTTTCAGCCGGTTTGGGCCGGGGGTCAAGGCAGAAATTTGC
CGGGATGCCATCACTGGTGACTCGCTCAATTACGCATTTGTCGAATTTGA
TGACGTTGAAAGCTGCGAGGAGGCTTATAAGAAGATGGATAACGCTTTGA
TTGATGATCGGCGCATCAAGGTGGACTTCTCGCAGTCGGTTGCGAAGCAA
TGGAATAAATACACGATGCGGCCGAGAGGGAGCACTAAAATTAAAAGTCG
CGGGAAAGGGTTCAAGGAATGTAGTGAATCTATCGCAGCTTTGCCGGCAT
CGACGAAGAGTCGATGGGAGGGAAATTATAGTGATGGGCGTAGCAGTAGA
AAAGAAGACAGGAAGCGCTCCCGCACATCACCTTCTCCGCCTCCTCCTCG
CAAGCCCCGCTCTCGATCACGCTCTCGTGAGAGGTGGGATAAATATAGCG
AGCGACATGGTGGTTATGGTGGTGGTGACCGGAGAGAAAGAGGTAGGAGC
AAAAGCGGCAGGAGCCGCCGTCGGTCCTCTTCAAGGTAGGAAGACGAGGG
CAAGCAAATGCTAATTCCTTGTATAGAGAGTGGCACTGTGCAATCCATGT
GTATGTACTGTCCAGGCACGGTGTTACCTGTGGGGATGCGAGAGAGGCAA
TGCTGGGCCAGGAATGTGAAGGAAAAGATGGGTCAGTCACACTGCAGATG
CGAATAGTGGAAAGGTCCCGTTGGCGTGCTTGCGCATCACCGGCGTTGTG
TGGCATATGATGCCACATCTTGGCACCCGTATTCCTCTATAGCTCTTCTT
GGCTGGTACGAGATATTATTGCAGGATGGACGCAAGATTACAGCGACAAA
AAAAAAGAGCCTTCTTTCTGCGCCTCCATTTCTCTCCCTCCCTTCCTGCT
GACGTCTTTCGGGGAGAAGCTACAGAAGGAGGAGGGAGGTTGCAGCTTAG
CTCCAATGCGTGACTGGGTGACCCTCTGGCTTTCTCTCATGTCTTCTGGT
GTTTCCCTGGAGGATTACCACCTGAAGGAAACGAGAGTCATGTGGTCCAG
CCTTAGGCTCACCGGAAGAATGGAGTAGAGCAGTCTATTTTTTCTCCTTT
CTTTCCCTCCTCCCTCCCGCATTATTTCCCTCTTCTTGGGACATAAGATT
CAACTGTAAACAAATAAGAAGAGCATTCGACGATGACGCAAGAAATTTTT
AATAAGCACTTCCTCGGATTCCCT
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protein sequence of jgi.p|Nanoce1779_2|576490

>mRNA_190-protein ID=mRNA_190-protein|Name=jgi.p|Nanoce1779_2|576490|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MSVLLETTLGEFVVDLMCEECPLAAKNFLKLCKAKYYNNVLIYNVQQNFM
IQTGDPTGTGRGGTSIYGLLYGEQAKFFEDEIRLPQLKHNRPGLVCMASG
GENKNTSQFYITMRGEDLEFLDGKHTIFGEVAEGLDTVLKDMNELYCDTN
GRPYRDVRILHTYVLEDPFIDPPGMADLVPAASPLRERPIAETVKPRLID
LVDEEDGLTAEALDERIREAEAKKRAVVLEMIGDLPDAEIKPPENVLFVC
KLNAITTDEDLEIIFSRFGPGVKAEICRDAITGDSLNYAFVEFDDVESCE
EAYKKMDNALIDDRRIKVDFSQSVAKQWNKYTMRPRGSTKIKSRGKGFKE
CSESIAALPASTKSRWEGNYSDGRSSRKEDRKRSRTSPSPPPPRKPRSRS
RSRERWDKYSERHGGYGGGDRRERGRSKSGRSRRRSSSR*
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mRNA from alignment at scaffold_3:477728..480011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_190 ID=mRNA_190|Name=jgi.p|Nanoce1779_2|576490|organism=Nannochloropsis oceanica|type=mRNA|length=2284bp|location=Sequence derived from alignment at scaffold_3:477728..480011- (Nannochloropsis oceanica)
ACAGGCACGCTACACCGTCATGTCGGTGCTGCTGGAGACGACGCTCGGGG
AGTTCGTGGTGGACCTGATGTGCGAAGAGTGTCCCTTGGCGGCGAAGAAT
TTCCTTAAGCTCTGCAAGGCAAAGTACTACAACAATGTCCTCATCTACAA
TGTGCAGCAGAACTTTATGATTCAGACGGGGGATCCCACGGGCACAGGCC
GCGGGGGTACGTCGATTTATGGCTTGTTGTACGGGGAGCAGGCCAAGTTC
TTCGAGGACGAGATCCGCCTGCCCCAGCTCAAGCACAACCGGCCCGGCTT
GGTGTGCATGGCCTCGGGTGGGGAGAATAAAAACACGTCGCAATTCTACA
TCACCATGCGGGGTGAAGATCTTGAATTTTTGGACGGGAAACACACAATA
TTCGGAGAAGTGGCTGAGGGCCTAGACACGGTCCTCAAAGACATGAACGA
GCTGTACTGTGATACGAACGGTCGGCCTTACCGGGACGTACGCATCCTTC
ATACCTACGTGCTCGAAGATCCGTTCATTGATCCCCCAGGCATGGCAGAC
TTGGTGCCTGCCGCCTCACCTTTGCGGGAACGGCCGATAGCAGAGACAGT
GAAGCCTCGGCTGATCGATTTGGTGGACGAAGAAGATGGGCTGACAGCCG
AGGCCTTGGACGAACGCATCCGAGAAGCGGAGGCAAAGAAGCGGGCAGTG
GTCCTGGAGATGATTGGTGACTTACCCGACGCGGAGATCAAGCCGCCAGA
AAATGTGCTCTTTGTGTGTAAACTTAATGCCATTACCACGGACGAGGATT
TGGAAATTATTTTCAGCCGGTTTGGGCCGGGGGTCAAGGCAGAAATTTGC
CGGGATGCCATCACTGGTGACTCGCTCAATTACGCATTTGTCGAATTTGA
TGACGTTGAAAGCTGCGAGGAGGCTTATAAGAAGATGGATAACGCTTTGA
TTGATGATCGGCGCATCAAGGTGGACTTCTCGCAGTCGGTTGCGAAGCAA
TGGAATAAATACACGATGCGGCCGAGAGGGAGCACTAAAATTAAAAGTCG
CGGGAAAGGGTTCAAGGAATGTAGTGAATCTATCGCAGCTTTGCCGGCAT
CGACGAAGAGTCGATGGGAGGGAAATTATAGTGATGGGCGTAGCAGTAGA
AAAGAAGACAGGAAGCGCTCCCGCACATCACCTTCTCCGCCTCCTCCTCG
CAAGCCCCGCTCTCGATCACGCTCTCGTGAGAGGTGGGATAAATATAGCG
AGCGACATGGTGGTTATGGTGGTGGTGACCGGAGAGAAAGAGGTAGGAGC
AAAAGCGGCAGGAGCCGCCGTCGGTCCTCTTCAAGGTAGGAAGACGAGGG
CAAGCAAATGCTAATTCCTTGTATAGAGAGTGGCACTGTGCAATCCATGT
GTATGTACTGTCCAGGCACGGTGTTACCTGTGGGGATGCGAGAGAGGCAA
TGCTGGGCCAGGAATGTGAAGGAAAAGATGGGTCAGTCACACTGCAGATG
CGAATAGTGGAAAGGTCCCGTTGGCGTGCTTGCGCATCACCGGCGTTGTG
TGGCATATGATGCCACATCTTGGCACCCGTATTCCTCTATAGCTCTTCTT
GGCTGGTACGAGATATTATTGCAGGTACGTGTCCGTGGGGGCTGGCGGGG
GAGGGGGGTTATCCTGCTCGATTGTATGAAACTTTTGGGACTGCCGCATG
ATCCCCCTTCTGAAAGTAGAGGAGTATGCTTCTTAAAGGCAGAGAAGTAT
GCTTCTTGAAGGCGAGGATCTGTATGCCCTTGACATAGCACAAGCCTCCG
GTCCCATAATCGAAAGATTTACCAAGGGCAACACTTTCGTTTTCAGTACC
AATCTTCCACCTTTCCCTACCTCACTCCCTACAGGATGGACGCAAGATTA
CAGCGACAAAAAAAAAGAGCCTTCTTTCTGCGCCTCCATTTCTCTCCCTC
CCTTCCTGCTGACGTCTTTCGGGGAGAAGCTACAGAAGGAGGAGGGAGGT
TGCAGCTTAGCTCCAATGCGTGACTGGGTGACCCTCTGGCTTTCTCTCAT
GTCTTCTGGTGTTTCCCTGGAGGATTACCACCTGAAGGAAACGAGAGTCA
TGTGGTCCAGCCTTAGGCTCACCGGAAGAATGGAGTAGAGCAGTCTATTT
TTTCTCCTTTCTTTCCCTCCTCCCTCCCGCATTATTTCCCTCTTCTTGGG
ACATAAGATTCAACTGTAAACAAATAAGAAGAGCATTCGACGATGACGCA
AGAAATTTTTAATAAGCACTTCCTCGGATTCCCT
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Coding sequence (CDS) from alignment at scaffold_3:477728..480011-

>mRNA_190 ID=mRNA_190|Name=jgi.p|Nanoce1779_2|576490|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_3:477728..480011- (Nannochloropsis oceanica)
ATGTCGGTGCTGCTGGAGACGACGCTCGGGGAGTTCGTGGTGGACCTGAT
GTGCGAAGAGTGTCCCTTGGCGGCGAAGAATTTCCTTAAGCTCTGCAAGG
CAAAGTACTACAACAATGTCCTCATCTACAATGTGCAGCAGAACTTTATG
ATTCAGACGGGGGATCCCACGGGCACAGGCCGCGGGGGTACGTCGATTTA
TGGCTTGTTGTACGGGGAGCAGGCCAAGTTCTTCGAGGACGAGATCCGCC
TGCCCCAGCTCAAGCACAACCGGCCCGGCTTGGTGTGCATGGCCTCGGGT
GGGGAGAATAAAAACACGTCGCAATTCTACATCACCATGCGGGGTGAAGA
TCTTGAATTTTTGGACGGGAAACACACAATATTCGGAGAAGTGGCTGAGG
GCCTAGACACGGTCCTCAAAGACATGAACGAGCTGTACTGTGATACGAAC
GGTCGGCCTTACCGGGACGTACGCATCCTTCATACCTACGTGCTCGAAGA
TCCGTTCATTGATCCCCCAGGCATGGCAGACTTGGTGCCTGCCGCCTCAC
CTTTGCGGGAACGGCCGATAGCAGAGACAGTGAAGCCTCGGCTGATCGAT
TTGGTGGACGAAGAAGATGGGCTGACAGCCGAGGCCTTGGACGAACGCAT
CCGAGAAGCGGAGGCAAAGAAGCGGGCAGTGGTCCTGGAGATGATTGGTG
ACTTACCCGACGCGGAGATCAAGCCGCCAGAAAATGTGCTCTTTGTGTGT
AAACTTAATGCCATTACCACGGACGAGGATTTGGAAATTATTTTCAGCCG
GTTTGGGCCGGGGGTCAAGGCAGAAATTTGCCGGGATGCCATCACTGGTG
ACTCGCTCAATTACGCATTTGTCGAATTTGATGACGTTGAAAGCTGCGAG
GAGGCTTATAAGAAGATGGATAACGCTTTGATTGATGATCGGCGCATCAA
GGTGGACTTCTCGCAGTCGGTTGCGAAGCAATGGAATAAATACACGATGC
GGCCGAGAGGGAGCACTAAAATTAAAAGTCGCGGGAAAGGGTTCAAGGAA
TGTAGTGAATCTATCGCAGCTTTGCCGGCATCGACGAAGAGTCGATGGGA
GGGAAATTATAGTGATGGGCGTAGCAGTAGAAAAGAAGACAGGAAGCGCT
CCCGCACATCACCTTCTCCGCCTCCTCCTCGCAAGCCCCGCTCTCGATCA
CGCTCTCGTGAGAGGTGGGATAAATATAGCGAGCGACATGGTGGTTATGG
TGGTGGTGACCGGAGAGAAAGAGGTAGGAGCAAAAGCGGCAGGAGCCGCC
GTCGGTCCTCTTCAAGGTAG
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Synonyms
Publications