jgi.p|Nanoce1779_2|578346, mRNA_1897 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578346
Unique NamemRNA_1897
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1330
Alignment locationscaffold_4:297729..299162 +

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Properties
Property NameValue
TranscriptId578432
TrackFilteredModels2
ProteinId578346
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:297729..299162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578346gene_1897Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578346mRNA_1897-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1897CDS_1897Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1897 ID=mRNA_1897|Name=jgi.p|Nanoce1779_2|578346|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp
TCGTCCAACTCTTCCTTCCTCTTCTCCCTTCATGCCTCCGCTTTCAATGC
CATCCATCGATGAATAACTTCCGCTCAGCATGGTGGAACCAACCCCAGTC
GCGGCTAGCTTGCGCTTGAAGCGCCGGCGGTAGGTCGGGTGAATATTGGC
GATCGCATCCAAAAGCTCCATTCTCTCCCCGGGGCAAAAAACGTCGCAGA
TCGATTCGATGATGTTGTAGGCAGATCTGACAATGGCAGCTTTTTGCGAC
CGCCGCAAGCCCGTGAAGCCCCGCTTGCGTTTCCGTACGTGCTTATCGAT
GAGGATGTAAAAGGTACCGATACCCTTCACCTTGTCACTTAATGCCTCCT
CCATTAAGTCTGATGCGTCCAGTAAGTCATCGTCGTCGTCCCCATCCATC
AAGTCTTCGCGAATCAGCATCTGCTGTTCCCGACCGTGACGTCGGTGGTG
CGCCGCCATCATGGCGTTGGCCGACGGGTTGGATGAAGAAGAGCTCGTAG
ATGCGACCGAGCTGGCTCCATGTCCATGCACAAGCCCTTGTATCCGCATC
ATCCCGTCATTATGCTGCGGCTGGAGGTGCTTTTGCGTGACATGATGTGG
TTGCTGCTGGAAGTGGGGCGGTGGCTGGGGCGGGTGCTGCATATGTGGGT
GCTGCTGATGGTGAGGGTGCTGCTGATGGTGGTGGTGCTGTTGTTGCTGG
TGGTGATGGTGGTGGTGAGACATGTCCACAACAGGGGGCTGAGGCGGCAG
ACGATGCAGCATTTTCCCTCCTCCCTGGTCCGGGTCATGTGGTTGTTGCG
AATGCGGCAGTTGGGGGGGAAGCGAGGATACGCGGCCCGTACCACCATGC
AAGTGGCTGTTGCTCAAGTGGCCGGCATGGGTGTCATCTTCCTTCTTGAG
CTCTCGCATTTGCAGCGCGGTCGCATCTTCGTTGACTCCTCCAACCGCCC
CCCCACCCGTGGGCGCGCCTCCCGCCCCAGCAGTCGAGACCGATGGAGAT
GGCAAGCCTGACGACATTTCGCTTCGGCCGGCAGTGGCGGACACCAGCAA
GCTCTCCATGCACGCTGGTCCGCCTGTCAAGTGTGCGGGGTTGCGAGGAA
GAGATTATGTCCATGTAGGAAAGAATTTATATCACTCACTCCTTTTCTGA
GGGGACGCGGGATAACCTGCGGAGAAGACCGTCGGGTGGACGGGCTCCTC
GTTGCGAGAGTAAGCGTGTGTCACATACACACCTAATTTCCTGTTGACCA
CCGCCTCCTTCACAAAAAGATGAAAATCCGTCGTTGCATTCAAAAAGTCC
CGTCCCGCTAATCCACTCCGCGCTCACGGC
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protein sequence of jgi.p|Nanoce1779_2|578346

>mRNA_1897-protein ID=mRNA_1897-protein|Name=jgi.p|Nanoce1779_2|578346|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MSMHKPLYPHHPVIMLRLEVLLRDMMWLLLEVGRWLGRVLHMWVLLMVRV
LLMVVVLLLLVVMVVVRHVHNRGLRRQTMQHFPSSLVRVMWLLRMRQLGG
KRGYAARTTMQVAVAQVAGMGVIFLLELSHLQRGRIFVDSSNRPPTRGRA
SRPSSRDRWRWQA*
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mRNA from alignment at scaffold_4:297729..299162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1897 ID=mRNA_1897|Name=jgi.p|Nanoce1779_2|578346|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp|location=Sequence derived from alignment at scaffold_4:297729..299162+ (Nannochloropsis oceanica)
TCGTCCAACTCTTCCTTCCTCTTCTCCCTTCATGCCTCCGCTTTCAATGC
CATCCATCGATGAATAACTTCCGCTCAGCATGGTGGAACCAACCCCAGTC
GCGGCTAGCTTGCGCTTGAAGCGCCGGCGGTAGGTCGGGTGAATATTGGC
GATCGCATCCAAAAGCTCCATTCTCTCCCCGGGGCAAAAAACGTCGCAGA
TCGATTCGATGATGTTGTAGGCAGATCTAGGAGGGGGAGAAGAGAAGGAA
GAAGAAAGGAAGGGAGAGACAAAAAAAAGCGTAAGATGATGGGAGAGTTC
GACAGTCATGAGTCAAAACTTATGCCTTACCTGACAATGGCAGCTTTTTG
CGACCGCCGCAAGCCCGTGAAGCCCCGCTTGCGTTTCCGTACGTGCTTAT
CGATGAGGATGTAAAAGGTACCGATACCCTTCACCTTGTCACTTAATGCC
TCCTCCATTAAGTCTGATGCGTCCAGTAAGTCATCGTCGTCGTCCCCATC
CATCAAGTCTTCGCGAATCAGCATCTGCTGTTCCCGACCGTGACGTCGGT
GGTGCGCCGCCATCATGGCGTTGGCCGACGGGTTGGATGAAGAAGAGCTC
GTAGATGCGACCGAGCTGGCTCCATGTCCATGCACAAGCCCTTGTATCCG
CATCATCCCGTCATTATGCTGCGGCTGGAGGTGCTTTTGCGTGACATGAT
GTGGTTGCTGCTGGAAGTGGGGCGGTGGCTGGGGCGGGTGCTGCATATGT
GGGTGCTGCTGATGGTGAGGGTGCTGCTGATGGTGGTGGTGCTGTTGTTG
CTGGTGGTGATGGTGGTGGTGAGACATGTCCACAACAGGGGGCTGAGGCG
GCAGACGATGCAGCATTTTCCCTCCTCCCTGGTCCGGGTCATGTGGTTGT
TGCGAATGCGGCAGTTGGGGGGGAAGCGAGGATACGCGGCCCGTACCACC
ATGCAAGTGGCTGTTGCTCAAGTGGCCGGCATGGGTGTCATCTTCCTTCT
TGAGCTCTCGCATTTGCAGCGCGGTCGCATCTTCGTTGACTCCTCCAACC
GCCCCCCCACCCGTGGGCGCGCCTCCCGCCCCAGCAGTCGAGACCGATGG
AGATGGCAAGCCTGACGACATTTCGCTTCGGCCGGCAGTGGCGGACACCA
GCAAGCTCTCCATGCACGCTGGTCCGCCTGTCAAGTGTGCGGGGTTGCGA
GGAAGAGATTATGTCCATGTAGGAAAGAATTTATATCACTCACTCCTTTT
CTGAGGGGACGCGGGATAACCTGCGGAGAAGACCGTCGGGTGGACGGGCT
CCTCGTTGCGAGAGTAAGCGTGTGTCACATACACACCTAATTTCCTGTTG
ACCACCGCCTCCTTCACAAAAAGATGAAAATCCGTCGTTGCATTCAAAAA
GTCCCGTCCCGCTAATCCACTCCGCGCTCACGGC
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Coding sequence (CDS) from alignment at scaffold_4:297729..299162+

>mRNA_1897 ID=mRNA_1897|Name=jgi.p|Nanoce1779_2|578346|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_4:297729..299162+ (Nannochloropsis oceanica)
ATGTCCATGCACAAGCCCTTGTATCCGCATCATCCCGTCATTATGCTGCG
GCTGGAGGTGCTTTTGCGTGACATGATGTGGTTGCTGCTGGAAGTGGGGC
GGTGGCTGGGGCGGGTGCTGCATATGTGGGTGCTGCTGATGGTGAGGGTG
CTGCTGATGGTGGTGGTGCTGTTGTTGCTGGTGGTGATGGTGGTGGTGAG
ACATGTCCACAACAGGGGGCTGAGGCGGCAGACGATGCAGCATTTTCCCT
CCTCCCTGGTCCGGGTCATGTGGTTGTTGCGAATGCGGCAGTTGGGGGGG
AAGCGAGGATACGCGGCCCGTACCACCATGCAAGTGGCTGTTGCTCAAGT
GGCCGGCATGGGTGTCATCTTCCTTCTTGAGCTCTCGCATTTGCAGCGCG
GTCGCATCTTCGTTGACTCCTCCAACCGCCCCCCCACCCGTGGGCGCGCC
TCCCGCCCCAGCAGTCGAGACCGATGGAGATGGCAAGCCTGA
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Synonyms
Publications