Properties
| Property Name | Value |
|---|
| TranscriptId | 628174 |
| Track | FilteredModels2 |
| ProteinId | 628088 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:295893..299162 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1896 ID=mRNA_1896|Name=jgi.p|Nanoce1779_2|628088|organism=Nannochloropsis oceanica|type=mRNA|length=3140bp
GCCGTGAGCGCGGAGTGGATTAGCGGGACGGGACTTTTTGAATGCAACGA
CGGATTTTCATCTTTTTGTGAAGGAGGCGGTGGTCAACAGGAAATTAGGT
GTGTATGTGACACACGCTTACTCTCGCAACGAGGAGCCCGTCCACCCGAC
GGTCTTCTCCGCAGGTTATCCCGCGTCCCCTCAGAAAAGGAGTGAGTGAT
ATAAATTCTTTCCTACATGGACATAATCTCTTCCTCGCAACCCCGCACAC
TTGACAGGCGGACCAGCGTGCATGGAGAGCTTGCTGGTGTCCGCCACTGC
CGGCCGAAGCGAAATGTCGTCAGGCTTGCCATCTCCATCGGTCTCGACTG
CTGGGGCGGGAGGCGCGCCCACGGGTGGGGGGGCGGTTGGAGGAGTCAAC
GAAGATGCGACCGCGCTGCAAATGCGAGAGCTCAAGAAGGAAGATGACAC
CCATGCCGGCCACTTGAGCAACAGCCACTTGCATGGTGGTACGGGCCGCG
TATCCTCGCTTCCCCCCCAACTGCCGCATTCGCAACAACCACATGACCCG
GACCAGGGAGGAGGGAAAATGCTGCATCGTCTGCCGCCTCAGCCCCCTGT
TGTGGACATGTCTCACCACCACCATCACCACCAGCAACAACAGCACCACC
ACCATCAGCAGCACCCTCACCATCAGCAGCACCCACATATGCAGCACCCG
CCCCAGCCACCGCCCCACTTCCAGCAGCAACCACATCATGTCACGCAAAA
GCACCTCCAGCCGCAGCATAATGACGGGATGATGCGGATACAAGGGCTTG
TGCATGGACATGGAGCCAGCTCGGTCGCATCTACGAGCTCTTCTTCATCC
AACCCGTCGGCCAACGCCATGATGGCGGCGCACCACCGACGTCACGGTCG
GGAACAGCAGATGCTGATTCGCGAAGACTTGATGGATGGGGACGACGACG
ATGACTTACTGGACGCATCAGACTTAATGGAGGAGGCATTAAGTGACAAG
GTGAAGGGTATCGGTACCTTTTACATCCTCATCGATAAGCACGTACGGAA
ACGCAAGCGGGGCTTCACGGGCTTGCGGCGGTCGCAAAAAGCTGCCATTG
TCAGATCTGCCTACAACATCATCGAATCGATCTGCGACGTTTTTTGCCCC
GGGGAGAGAATGGAGCTTTTGGATGCGATCGCCAATATTCACCCGACCTA
CCGCCGGCGCTTCAAGCGCAAGCTAGCCGCGACTGGGGTTGGTTCCACCA
TGCTGAGCGGAAGTTATTCATCGATGGATGGCATTGAAAGCGGAGGCATG
AAGGGAGAAGAGGAAGGAAGAGTTGGACGAGGGGGAGGCGGGGAGGGGGG
GTCCTTTTCAGACGTAGAAACCTACTATGGCTCTCCTGACAAGGCGTACC
GAAAGCCGCTTTCCCCTGTGTTAACCATGCTGGAGCAAAGTTCTGGGTCA
GAATCTGACGAAGGAGCAGCTGCTTTCTCAGTATAAACGGCCGGCGGGTT
CTACCATCGCTGTGTCTACCTCAGGCGGCCTCGCCAAGCCTCATTCCCCC
AACCTCCAGCAGCAACTTCAGCACCCGCCGCATCAAATACATCAGCCATC
GTCACAGCAGCAGCAGCAGCAGTTACAGCAGGCTCCATATCGCAATGCTC
AACAGCAGCACGGCCCCGGTGTCATGCCGCCCGCTGGTTCTTCTGGCTAC
CCTTCCCACCCTCATCACTCCCACCAGCATCACCAGCAGCAATCACAGCA
ACCGCTCAACCAGCAGCGACAGCAGCATCAGCAGCATACCGGCAGTATTC
ATTCATCGCAAGGTGACGCTTCACAGTACGCGCAGCAGGAGCAGCAGCCG
CCGCCAGTGCATCACATGTATGGAGGGGTAGGAGCGCCTGCCCCGCTTCC
TCATCCCAACAATGCAGGTTGGCCTTCTCACATACCTCAGCAACAGTATT
CCCAGCAATCGCACCCTCAGCAGCAGCCACATCACCAACAGCAGCAGCAT
CAACATCATCATCATCACCATCATCAGCAGCACCCTCAGCAGCAACATCA
ACATCAGCAGCAGCACGGTGGAGCCCAAGCATGCGGATCCCCTTACTTTT
CTCCCCCACAGCAGCACATCACCCCGCCCTTCGCTGCTGCCGGTCCCCCC
TCCGGACGCCAGCCCTGCCTCCCTCCCTCCCATCATGGCTCCATGCCTCC
CCACCCCTCCCTCGGCCACCGCCTCCAGCATTCAAGCTACCCTGACGCCC
CTATCCACCCCTCGGGCCCCTCTACCCACCTTATGCAACCTCAGCAGCTC
TCGTATACAAAGGGCTTAGGCCCTTCTTCGCAATATTTACAAGGTTCAAT
GACGTCAAAAGCCCCGTACCACTATCCTTCTTCCCCACAGCAGCAGCAAC
AGCAGCAGCAGCAGCAACAGCAGCAGCAGGAACAACAATATCACTCAGTA
CCGGTGCATCGCCAAAAGCAGCCACAGCAGCAGCAGCATCAACAGCATCA
ACAGCATCAACAGCACCAGTTACATCAGCAGCAGGATCAACAGCAGCACC
AACACCAGTCACAGCACCAGCAGCATCACCAGCAGCAACAACACCAGGGT
GTTCCACCATCAAAAGTTGGATCGGGCAGCGGGCGTAGCAACACCGCTAT
CACTGCCGCCTTTGCAGGAGTAGCAGCCAGAGGTGAAGGTGGAGGACAAG
CTTCCCGACCGGTCATAGATCAACTCTCTCGCCTTGCAGCCGGCACACTG
GCAAAGCTGAGGAAGAGCTCAGAGGGGGAAGGGGGAGAGGGGGGCAACGA
TAACAGCAGTGTCGGGAGCAACCGAACCACGGGCAACTTCTCCGCATCTG
CTCTCCATCATGTCTCTTCTTCTATCACCAGTGTCACTACTCCTTATTCA
GCTCCTTCTCCTGCCCCTGCCCGCTCTCCTCCCTTGGATACCGCGCCACT
TGCTGGTGCTCCTGCCGCCGCCATTGCTTGCACGAGTGTCAGGAGGGCAG
ACAGCAGCAGCAGAAGCAGCAGCAGCAGCAGCAGTAGCGGCAGCAGTACC
AGTAGCGATAGCAGTAGAAGTGGTGGTAGTAGCAGCAGCTCTGCAGCCTA
AACAACCAAGGGTTGAGGCCAAATTACCATCACAGCCGAT back to topprotein sequence of jgi.p|Nanoce1779_2|628088 >mRNA_1896-protein ID=mRNA_1896-protein|Name=jgi.p|Nanoce1779_2|628088|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MPPAGSSGYPSHPHHSHQHHQQQSQQPLNQQRQQHQQHTGSIHSSQGDAS
QYAQQEQQPPPVHHMYGGVGAPAPLPHPNNAGWPSHIPQQQYSQQSHPQQ
QPHHQQQQHQHHHHHHHQQHPQQQHQHQQQHGGAQACGSPYFSPPQQHIT
PPFAAAGPPSGRQPCLPPSHHGSMPPHPSLGHRLQHSSYPDAPIHPSGPS
THLMQPQQLSYTKGLGPSSQYLQGSMTSKAPYHYPSSPQQQQQQQQQQQQ
QQEQQYHSVPVHRQKQPQQQQHQQHQQHQQHQLHQQQDQQQHQHQSQHQQ
HHQQQQHQGVPPSKVGSGSGRSNTAITAAFAGVAARGEGGGQASRPVIDQ
LSRLAAGTLAKLRKSSEGEGGEGGNDNSSVGSNRTTGNFSASALHHVSSS
ITSVTTPYSAPSPAPARSPPLDTAPLAGAPAAAIACTSVRRADSSSRSSS
SSSSSGSSTSSDSSRSGGSSSSSAA* back to topmRNA from alignment at scaffold_4:295893..299162- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1896 ID=mRNA_1896|Name=jgi.p|Nanoce1779_2|628088|organism=Nannochloropsis oceanica|type=mRNA|length=3270bp|location=Sequence derived from alignment at scaffold_4:295893..299162- (Nannochloropsis oceanica)
GCCGTGAGCGCGGAGTGGATTAGCGGGACGGGACTTTTTGAATGCAACGA
CGGATTTTCATCTTTTTGTGAAGGAGGCGGTGGTCAACAGGAAATTAGGT
GTGTATGTGACACACGCTTACTCTCGCAACGAGGAGCCCGTCCACCCGAC
GGTCTTCTCCGCAGGTTATCCCGCGTCCCCTCAGAAAAGGAGTGAGTGAT
ATAAATTCTTTCCTACATGGACATAATCTCTTCCTCGCAACCCCGCACAC
TTGACAGGCGGACCAGCGTGCATGGAGAGCTTGCTGGTGTCCGCCACTGC
CGGCCGAAGCGAAATGTCGTCAGGCTTGCCATCTCCATCGGTCTCGACTG
CTGGGGCGGGAGGCGCGCCCACGGGTGGGGGGGCGGTTGGAGGAGTCAAC
GAAGATGCGACCGCGCTGCAAATGCGAGAGCTCAAGAAGGAAGATGACAC
CCATGCCGGCCACTTGAGCAACAGCCACTTGCATGGTGGTACGGGCCGCG
TATCCTCGCTTCCCCCCCAACTGCCGCATTCGCAACAACCACATGACCCG
GACCAGGGAGGAGGGAAAATGCTGCATCGTCTGCCGCCTCAGCCCCCTGT
TGTGGACATGTCTCACCACCACCATCACCACCAGCAACAACAGCACCACC
ACCATCAGCAGCACCCTCACCATCAGCAGCACCCACATATGCAGCACCCG
CCCCAGCCACCGCCCCACTTCCAGCAGCAACCACATCATGTCACGCAAAA
GCACCTCCAGCCGCAGCATAATGACGGGATGATGCGGATACAAGGGCTTG
TGCATGGACATGGAGCCAGCTCGGTCGCATCTACGAGCTCTTCTTCATCC
AACCCGTCGGCCAACGCCATGATGGCGGCGCACCACCGACGTCACGGTCG
GGAACAGCAGATGCTGATTCGCGAAGACTTGATGGATGGGGACGACGACG
ATGACTTACTGGACGCATCAGACTTAATGGAGGAGGCATTAAGTGACAAG
GTGAAGGGTATCGGTACCTTTTACATCCTCATCGATAAGCACGTACGGAA
ACGCAAGCGGGGCTTCACGGGCTTGCGGCGGTCGCAAAAAGCTGCCATTG
TCAGGTAAGGCATAAGTTTTGACTCATGACTGTCGAACTCTCCCATCATC
TTACGCTTTTTTTTGTCTCTCCCTTCCTTTCTTCTTCCTTCTCTTCTCCC
CCTCCTAGATCTGCCTACAACATCATCGAATCGATCTGCGACGTTTTTTG
CCCCGGGGAGAGAATGGAGCTTTTGGATGCGATCGCCAATATTCACCCGA
CCTACCGCCGGCGCTTCAAGCGCAAGCTAGCCGCGACTGGGGTTGGTTCC
ACCATGCTGAGCGGAAGTTATTCATCGATGGATGGCATTGAAAGCGGAGG
CATGAAGGGAGAAGAGGAAGGAAGAGTTGGACGAGGGGGAGGCGGGGAGG
GGGGGTCCTTTTCAGACGTAGAAACCTACTATGGCTCTCCTGACAAGGCG
TACCGAAAGCCGCTTTCCCCTGTGTTAACCATGCTGGAGCAAAGTAAGCC
TGAGCTTTTTAATATTCAGGTTCTGGGTCAGAATCTGACGAAGGAGCAGC
TGCTTTCTCAGTATAAACGGCCGGCGGGTTCTACCATCGCTGTGTCTACC
TCAGGCGGCCTCGCCAAGCCTCATTCCCCCAACCTCCAGCAGCAACTTCA
GCACCCGCCGCATCAAATACATCAGCCATCGTCACAGCAGCAGCAGCAGC
AGTTACAGCAGGCTCCATATCGCAATGCTCAACAGCAGCACGGCCCCGGT
GTCATGCCGCCCGCTGGTTCTTCTGGCTACCCTTCCCACCCTCATCACTC
CCACCAGCATCACCAGCAGCAATCACAGCAACCGCTCAACCAGCAGCGAC
AGCAGCATCAGCAGCATACCGGCAGTATTCATTCATCGCAAGGTGACGCT
TCACAGTACGCGCAGCAGGAGCAGCAGCCGCCGCCAGTGCATCACATGTA
TGGAGGGGTAGGAGCGCCTGCCCCGCTTCCTCATCCCAACAATGCAGGTT
GGCCTTCTCACATACCTCAGCAACAGTATTCCCAGCAATCGCACCCTCAG
CAGCAGCCACATCACCAACAGCAGCAGCATCAACATCATCATCATCACCA
TCATCAGCAGCACCCTCAGCAGCAACATCAACATCAGCAGCAGCACGGTG
GAGCCCAAGCATGCGGATCCCCTTACTTTTCTCCCCCACAGCAGCACATC
ACCCCGCCCTTCGCTGCTGCCGGTCCCCCCTCCGGACGCCAGCCCTGCCT
CCCTCCCTCCCATCATGGCTCCATGCCTCCCCACCCCTCCCTCGGCCACC
GCCTCCAGCATTCAAGCTACCCTGACGCCCCTATCCACCCCTCGGGCCCC
TCTACCCACCTTATGCAACCTCAGCAGCTCTCGTATACAAAGGGCTTAGG
CCCTTCTTCGCAATATTTACAAGGTTCAATGACGTCAAAAGCCCCGTACC
ACTATCCTTCTTCCCCACAGCAGCAGCAACAGCAGCAGCAGCAGCAACAG
CAGCAGCAGGAACAACAATATCACTCAGTACCGGTGCATCGCCAAAAGCA
GCCACAGCAGCAGCAGCATCAACAGCATCAACAGCATCAACAGCACCAGT
TACATCAGCAGCAGGATCAACAGCAGCACCAACACCAGTCACAGCACCAG
CAGCATCACCAGCAGCAACAACACCAGGGTGTTCCACCATCAAAAGTTGG
ATCGGGCAGCGGGCGTAGCAACACCGCTATCACTGCCGCCTTTGCAGGAG
TAGCAGCCAGAGGTGAAGGTGGAGGACAAGCTTCCCGACCGGTCATAGAT
CAACTCTCTCGCCTTGCAGCCGGCACACTGGCAAAGCTGAGGAAGAGCTC
AGAGGGGGAAGGGGGAGAGGGGGGCAACGATAACAGCAGTGTCGGGAGCA
ACCGAACCACGGGCAACTTCTCCGCATCTGCTCTCCATCATGTCTCTTCT
TCTATCACCAGTGTCACTACTCCTTATTCAGCTCCTTCTCCTGCCCCTGC
CCGCTCTCCTCCCTTGGATACCGCGCCACTTGCTGGTGCTCCTGCCGCCG
CCATTGCTTGCACGAGTGTCAGGAGGGCAGACAGCAGCAGCAGAAGCAGC
AGCAGCAGCAGCAGTAGCGGCAGCAGTACCAGTAGCGATAGCAGTAGAAG
TGGTGGTAGTAGCAGCAGCTCTGCAGCCTAAACAACCAAGGGTTGAGGCC
AAATTACCATCACAGCCGAT back to topCoding sequence (CDS) from alignment at scaffold_4:295893..299162- >mRNA_1896 ID=mRNA_1896|Name=jgi.p|Nanoce1779_2|628088|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_4:295893..299162- (Nannochloropsis oceanica)
ATGCCGCCCGCTGGTTCTTCTGGCTACCCTTCCCACCCTCATCACTCCCA
CCAGCATCACCAGCAGCAATCACAGCAACCGCTCAACCAGCAGCGACAGC
AGCATCAGCAGCATACCGGCAGTATTCATTCATCGCAAGGTGACGCTTCA
CAGTACGCGCAGCAGGAGCAGCAGCCGCCGCCAGTGCATCACATGTATGG
AGGGGTAGGAGCGCCTGCCCCGCTTCCTCATCCCAACAATGCAGGTTGGC
CTTCTCACATACCTCAGCAACAGTATTCCCAGCAATCGCACCCTCAGCAG
CAGCCACATCACCAACAGCAGCAGCATCAACATCATCATCATCACCATCA
TCAGCAGCACCCTCAGCAGCAACATCAACATCAGCAGCAGCACGGTGGAG
CCCAAGCATGCGGATCCCCTTACTTTTCTCCCCCACAGCAGCACATCACC
CCGCCCTTCGCTGCTGCCGGTCCCCCCTCCGGACGCCAGCCCTGCCTCCC
TCCCTCCCATCATGGCTCCATGCCTCCCCACCCCTCCCTCGGCCACCGCC
TCCAGCATTCAAGCTACCCTGACGCCCCTATCCACCCCTCGGGCCCCTCT
ACCCACCTTATGCAACCTCAGCAGCTCTCGTATACAAAGGGCTTAGGCCC
TTCTTCGCAATATTTACAAGGTTCAATGACGTCAAAAGCCCCGTACCACT
ATCCTTCTTCCCCACAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAG
CAGCAGGAACAACAATATCACTCAGTACCGGTGCATCGCCAAAAGCAGCC
ACAGCAGCAGCAGCATCAACAGCATCAACAGCATCAACAGCACCAGTTAC
ATCAGCAGCAGGATCAACAGCAGCACCAACACCAGTCACAGCACCAGCAG
CATCACCAGCAGCAACAACACCAGGGTGTTCCACCATCAAAAGTTGGATC
GGGCAGCGGGCGTAGCAACACCGCTATCACTGCCGCCTTTGCAGGAGTAG
CAGCCAGAGGTGAAGGTGGAGGACAAGCTTCCCGACCGGTCATAGATCAA
CTCTCTCGCCTTGCAGCCGGCACACTGGCAAAGCTGAGGAAGAGCTCAGA
GGGGGAAGGGGGAGAGGGGGGCAACGATAACAGCAGTGTCGGGAGCAACC
GAACCACGGGCAACTTCTCCGCATCTGCTCTCCATCATGTCTCTTCTTCT
ATCACCAGTGTCACTACTCCTTATTCAGCTCCTTCTCCTGCCCCTGCCCG
CTCTCCTCCCTTGGATACCGCGCCACTTGCTGGTGCTCCTGCCGCCGCCA
TTGCTTGCACGAGTGTCAGGAGGGCAGACAGCAGCAGCAGAAGCAGCAGC
AGCAGCAGCAGTAGCGGCAGCAGTACCAGTAGCGATAGCAGTAGAAGTGG
TGGTAGTAGCAGCAGCTCTGCAGCCTAA back to top
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