jgi.p|Nanoce1779_2|578342, mRNA_1895 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578342
Unique NamemRNA_1895
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length856
Alignment locationscaffold_4:295031..295896 +

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Properties
Property NameValue
TranscriptId578428
TrackFilteredModels2
ProteinId578342
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:295031..295896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578342gene_1895Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578342mRNA_1895-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1895CDS_1895Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1895 ID=mRNA_1895|Name=jgi.p|Nanoce1779_2|578342|organism=Nannochloropsis oceanica|type=mRNA|length=856bp
AAGCGGCCACACAGAGGACCACCCCGTGGTCCCCAAGTTCCATGGATTGA
TGTAAAAATATTGCTTTTTGCTTCCTCTCGTCTTGCCCAGCACGGGGTTT
ACTGTCTTGCATCGCAAATCATCTTACTTCACGAGATATTTAGTTTTGTC
CCATGCCCATGTGACAAGCGATATGGCTGTCAAACCCCCCAAACAAATCA
CAGCATTAGCAATACCGCAACAAATCGCAACGTGCAAGTGAGTTTGTTTA
CCTGTTTTCTAGGGTGTATTTTGTGGTAATATGCATAGGGAAACTGCATT
TCTTGCTCAATTAGTTGAATTTACCTTGTTTTTATCTTTCATCTCTGTCT
TGTTGTCTCATTATGTGCTTTTAATTTCGACCTATCACTATCTCCCACTC
TCTCCTCCTATTAGTATCTGTGTGATTGCATTTATTTGTCTTTATGTGAA
AAAATGTACCTCTCTTTGATGGTATTATTTTTTCTCTCGGTCCCCTTCGC
TTTCGCATCCCCGTTGACGCATTCCTTCCTACTTCCCTGTCTTTCCCTCT
ACCCAAGAACGTCCCTGCATCGGCTGTATTTTTTGTCTCCTAAATATACA
CATGTAGTCGTCGTCATCAGAGTCAATGTCCATATCATTTTCGTAATCTT
CTCCCCCTATCTTTTTTTCCCGCTTTCCTCCCTCTTCCTTCCATCTGTCA
TAGCTCAATGACCTCAACGGTCGACAATACGAACACAACAATGGTAGCTC
CCCCTTCTGTTTCTTCTCCTTTTCTTAACCTTCCGTTTTTATGTCTAGCT
CCAGGCCGCAGCTGATGCCACCCTCCTCCTTCCCCCCCCCCACAGATGAA
CGATCG
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protein sequence of jgi.p|Nanoce1779_2|578342

>mRNA_1895-protein ID=mRNA_1895-protein|Name=jgi.p|Nanoce1779_2|578342|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MYLSLMVLFFLSVPFAFASPLTHSFLLPCLSLYPRTSLHRLYFLSPKYTH
VVVVIRVNVHIIFVIFSPYLFFPLSSLFLPSVIAQ*
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mRNA from alignment at scaffold_4:295031..295896+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1895 ID=mRNA_1895|Name=jgi.p|Nanoce1779_2|578342|organism=Nannochloropsis oceanica|type=mRNA|length=866bp|location=Sequence derived from alignment at scaffold_4:295031..295896+ (Nannochloropsis oceanica)
AAGCGGCCACACAGAGGACCACCCCGTGGTCCCCAAGTTCCATGGATTGA
TGTAAAAATATTGCTTTTTGCTTCCTCTCGTCTTGCCCAGCACGGGGTTT
ACTGTCTTGCATCGCAAATCATCTTACTTCACGAGATATTTAGTTTTGTC
CCATGCCCATGTGACAAGCGATATGGCTGTCAAACCCCCCAAACAAATCA
CAGCATTAGCAATACCGCAACAAATCGCAACGTGCAAGTGAGTTTGTTTA
CCTGTTTTCTAGGGTGTATTTTGTGGTAATATGCATAGGGAAACTGCATT
TCTTGCTCAATTAGTTGAATTTACCTTGTTTTTATCTTTCATCTCTGTCT
TGTTGTCTCATTATGTGCTTTTAATTTCGACCTATCACTATCTCCCACTC
TCTCCTCCTATTAGTATCTGTGTGATTGCATTTATTTGTCTTTATGTGAA
AAAATGTACCTCTCTTTGATGGTATTATTTTTTCTCTCGGTCCCCTTCGC
TTTCGCATCCCCGTTGACGCATTCCTTCCTACTTCCCTGTCTTTCCCTCT
ACCCAAGAACGTCCCTGCATCGGCTGTATTTTTTGTCTCCTAAATATACA
CATGTAGTCGTCGTCATCAGAGTCAATGTCCATATCATTTTCGTAATCTT
CTCCCCCTATCTTTTTTTCCCGCTTTCCTCCCTCTTCCTTCCATCTGTCA
TAGCTCAATGACCTCAACGGTCGACAATACGAACACAACAATGGTAGCTC
CCCCTTCTGTTTCTTCTCCTTTTCTTAACCTTCCGTTTTTATGTCTAGCT
CCAGGCCGCAGCTGATGCCACCCTCCTCCTTCCCCCCCCCCCCCCCCCCC
CACAGATGAACGATCG
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Coding sequence (CDS) from alignment at scaffold_4:295031..295896+

>mRNA_1895 ID=mRNA_1895|Name=jgi.p|Nanoce1779_2|578342|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at scaffold_4:295031..295896+ (Nannochloropsis oceanica)
ATGTACCTCTCTTTGATGGTATTATTTTTTCTCTCGGTCCCCTTCGCTTT
CGCATCCCCGTTGACGCATTCCTTCCTACTTCCCTGTCTTTCCCTCTACC
CAAGAACGTCCCTGCATCGGCTGTATTTTTTGTCTCCTAAATATACACAT
GTAGTCGTCGTCATCAGAGTCAATGTCCATATCATTTTCGTAATCTTCTC
CCCCTATCTTTTTTTCCCGCTTTCCTCCCTCTTCCTTCCATCTGTCATAG
CTCAATGA
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Synonyms
Publications