jgi.p|Nanoce1779_2|551472, mRNA_1889 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|551472
Unique Name	mRNA_1889
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1521
Alignment location	scaffold_4:273969..275922 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	551558
Track	FilteredModels2
ProteinId	551472

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:273969..275922 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551472	gene_1889	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551472	mRNA_1889-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1889	CDS_1889	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:273969..275922+
coding sequence from alignment at scaffold_4:273969..275922+

mRNA sequence

>mRNA_1889 ID=mRNA_1889|Name=jgi.p|Nanoce1779_2|551472|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp
GAAGAATTCATGGCCGATGTCGCCACAATTGTTGCTGCCCAAAGTCGCCT
CCCAAAAAGCCAAAAAAGCAATTTTGTTTCGGGGCCAGTCACAAGGTTGC
GGGGCACGGACCTCAAGTGCACCCACCAAAACAGCATGAAGTAGAAAGAT
TTCTTGAGTCATAAGTAGGTGCATTGGAACGTCTTGAGTGCTTCCATGGC
ATCTTGTCCATACAACATCATATTTCTTGCTTGCTTTCCCACTTATCTGC
TTCAATGTGTGCGCCTGTGCATGCAGGTGCCAGCCGGCTTTCTCTGCCAC
GCACCCTCATATTCATCTCCGTCTTTTCCACGCACACCTCGAACATGAAT
TCTTCTACAGCGCAGGGCGTCCACCAGGCACTAGCCTGCAGAAGGGTAAG
GAGCAAGGCGCCTTCACGGCACCCACGCCGAGGGATCGTGGCACCACGGG
GCCAAGCAGAAAGCGACACCTGTGCATCAGTCAAACATGTGGAAACCCTC
CACCCACACGCAGCATCGGCCAGGAGATGAAGATAACAATGGGCACGAGA
CCAGCAGCAACAGCAGCGATGGGAATTGTGCCGTTGGGGGCGGAGCGGGA
TACAAGGCCAAGGAGGCACTCAGCCAATACTTTAAAAAATGGCTTGGCGT
ATCCAACAAAAGAGACACCCACCGTGTTCCATCCCTTCGACACAGCTTTG
TGTCCTTCCTCCAAGCCACATTCAGTCTCACCACCCTTGCATTCTTGGAC
TACTTCATGCAATCTAAAGAAAGCTACATCATGTTTCTTGTCGGTTCCTT
TGGTGCCACGGCCGTCCTGCTTTACTCTGCACCCAGCTCCCCACTAGCCC
AACCCCGCGCCGTCCTAATGGGCCACTTCGTCTCGGCCCTCGCTGGTGTG
ACCGTGTACAAAATCATGGGTAACATCCCTTACTTTTCCGCAGGTGTTGC
CGTTGGGCTCGCTATTTTTTTAATGGAACGGACAAATTCGACACATCCGC
CGGGGGGGGCCACGGCGTTGGTGGCAATTGTTGGAGGTGATGTGGTATGG
AAGGCAGGGTATTGGTACGTCCTCTTCCCCTGCCTGTCAGGCGCGTTGCT
CATGCTGCTCGTGGCCTTGGTTTGTAATAACTTGGACCCGGATCGCCATT
ATCCGCAGTATTGGAGTCATTATTTCCCATTATACGAGAAGAGCAAGCTC
TTGATTTTTGATTGTTGCGGTGCTGCTGGTGCTGGTGCTGCTGGTGCTGC
TGGTGCCGCTGGGACGGTGGGCATGCCTTCCTTTTCCTCCCCCTCCCGCT
CGAACAGCCCCCCTCCCTCCTGTCCTCAAGTATCCTCCATTGAGTTGGTG
GATGATGACTGGGTTGATGAAAGTGGGCCTTCGTTCACGCCGCGTGGATC
GCAAACACCAAGCAATGGATGGGCGGCAGATGCAGTGGCAACAAGAGGAG
CAGGAGAGGAAAGTGGACATATTCTTAATTCGCAGGTGCTGGAGGAGGAG
GACACTTCGTCGCCCGTGTAA

protein sequence of jgi.p|Nanoce1779_2|551472

>mRNA_1889-protein ID=mRNA_1889-protein|Name=jgi.p|Nanoce1779_2|551472|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MWKPSTHTQHRPGDEDNNGHETSSNSSDGNCAVGGGAGYKAKEALSQYFK
KWLGVSNKRDTHRVPSLRHSFVSFLQATFSLTTLAFLDYFMQSKESYIMF
LVGSFGATAVLLYSAPSSPLAQPRAVLMGHFVSALAGVTVYKIMGNIPYF
SAGVAVGLAIFLMERTNSTHPPGGATALVAIVGGDVVWKAGYWYVLFPCL
SGALLMLLVALVCNNLDPDRHYPQYWSHYFPLYEKSKLLIFDCCGAAGAG
AAGAAGAAGTVGMPSFSSPSRSNSPPPSCPQVSSIELVDDDWVDESGPSF
TPRGSQTPSNGWAADAVATRGAGEESGHILNSQVLEEEDTSSPV*

mRNA from alignment at scaffold_4:273969..275922+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1889 ID=mRNA_1889|Name=jgi.p|Nanoce1779_2|551472|organism=Nannochloropsis oceanica|type=mRNA|length=1954bp|location=Sequence derived from alignment at scaffold_4:273969..275922+ (Nannochloropsis oceanica)
GAAGAATTCATGGCCGATGTCGCCACAATTGTTGCTGCCCAAAGTCGCCT
CCCAAAAAGCCAAAAAAGCAATTTTGTTTCGGGGCCAGTCACAAGGTTGC
GGGGCACGGACCTCAAGTGCACCCACCAAAACAGCATGAAGTAGAAAGAT
TTCTTGAGTCATAAGTAGGTGCATTGGAACGTCTTGAGTGCTTCCATGGC
ATCTTGTCCATACAACATCATATTTCTTGCTTGCTTTCCCACTTATCTGC
TTCAATGTGTGCGCCTGTGCATGCAGGTGCCAGCCGGCTTTCTCTGCCAC
GCACCCTCATATTCATCTCCGTCTTTTCCACGCACACCTCGAACATGAAT
TCTTCTACAGCGCAGGGCGTCCACCAGGCACTAGCCTGCAGAAGGGTAAG
GAGCAAGGCGCCTTCACGGCACCCACGCCGAGGGATCGTGGCACCACGGG
GCCAAGCAGAAAGCGACACCTGTGCATCAGTCAAACATGTGGAAACCCTC
CACCCACACGCAGCATCGGCCAGGAGATGAAGATAACAATGGGCACGAGA
CCAGCAGCAACAGCAGCGATGGGAATTGTGCCGTTGGGGGCGGAGCGGGA
TACAAGGCCAAGTAAGTTCCGTTTTGCGGGAGGGGTAGGGGGAAGGTGTT
TAAAGAGATCTTATTGATTGTACATGTATTGGGTTTTTAAATCCGTTTAT
GTGAAGGGTTAAAGGTCCCCTTATGCTAGGGGCGACGAAGATAACGCCTC
TGCGTACTCCACGCTCGCCCACACGCCTGCCGTCTGGCGGTGCCGGACGT
CTGCGCTGCAGACGCTGTGGCGAAAACGAGAGCCTTGCGATTGCGATCTC
GGAGAAATTTGCCTTATCTATAGACGATTTTGTCGGTAAAAGCGATTGAT
TACGCCCCACTTCAACATCACATGCCGGGCGCCAGCCGATAAGGACTTCC
TCCCTCCCTGCGTCCTTTCACTCCTCTATTTCACTCCCCGCGCCGTCATT
CACCCTTGTATCCCAACCCATTACCCTACCACCTAATGTAACAGGGAGGC
ACTCAGCCAATACTTTAAAAAATGGCTTGGCGTATCCAACAAAAGAGACA
CCCACCGTGTTCCATCCCTTCGACACAGCTTTGTGTCCTTCCTCCAAGCC
ACATTCAGTCTCACCACCCTTGCATTCTTGGACTACTTCATGCAATCTAA
AGAAAGCTACATCATGTTTCTTGTCGGTTCCTTTGGTGCCACGGCCGTCC
TGCTTTACTCTGCACCCAGCTCCCCACTAGCCCAACCCCGCGCCGTCCTA
ATGGGCCACTTCGTCTCGGCCCTCGCTGGTGTGACCGTGTACAAAATCAT
GGGTAACATCCCTTACTTTTCCGCAGGTGTTGCCGTTGGGCTCGCTATTT
TTTTAATGGAACGGACAAATTCGACACATCCGCCGGGGGGGGCCACGGCG
TTGGTGGCAATTGTTGGAGGTGATGTGGTATGGAAGGCAGGGTATTGGTA
CGTCCTCTTCCCCTGCCTGTCAGGCGCGTTGCTCATGCTGCTCGTGGCCT
TGGTTTGTAATAACTTGGACCCGGATCGCCATTATCCGCAGTATTGGAGT
CATTATTTCCCATTATACGAGAAGAGCAAGCTCTTGATTTTTGATTGTTG
CGGTGCTGCTGGTGCTGGTGCTGCTGGTGCTGCTGGTGCCGCTGGGACGG
TGGGCATGCCTTCCTTTTCCTCCCCCTCCCGCTCGAACAGCCCCCCTCCC
TCCTGTCCTCAAGTATCCTCCATTGAGTTGGTGGATGATGACTGGGTTGA
TGAAAGTGGGCCTTCGTTCACGCCGCGTGGATCGCAAACACCAAGCAATG
GATGGGCGGCAGATGCAGTGGCAACAAGAGGAGCAGGAGAGGAAAGTGGA
CATATTCTTAATTCGCAGGTGCTGGAGGAGGAGGACACTTCGTCGCCCGT
GTAA

Coding sequence (CDS) from alignment at scaffold_4:273969..275922+

>mRNA_1889 ID=mRNA_1889|Name=jgi.p|Nanoce1779_2|551472|organism=Nannochloropsis oceanica|type=CDS|length=2070bp|location=Sequence derived from alignment at scaffold_4:273969..275922+ (Nannochloropsis oceanica)
ATGTGGAAACCCTCCACCCACACGCAGCATCGGCCAGGAGATGAAGATAA
CAATGGGCACGAGACCAGCAGCAACAGCAGCGATGGGAATTGTGCCGTTG
GGGGCGGAGCGGGATACAAGGCCAAGGAGGCACTCAGCCAATACTTTAAA
AAATGGCTTGGCGTATCCAACAAAAGAGACACCCACCGTGTTCCATCCCT
TCGACACAGCTTTGTGTCCTTCCTCCAAGCCACATTCAGTCTCACCACCC
TTGCATTCTTGGACTACTTCATGCAATCTAAAGAAAGCTACATCATGTTT
CTTGTCGGTTCCTTTGGTGCCACGGCCGTCCTGCTTTACTCTGCACCCAG
CTCCCCACTAGCCCAACCCCGCGCCGTCCTAATGGGCCACTTCGTCTCGG
CCCTCGCTGGTGTGACCGTGTACAAAATCATGGGTAACATCCCTTACTTT
TCCGCAGGTGTTGCCGTTGGGCTCGCTATTTTTTTAATGGAACGGACAAA
TTCGACACATCCGCCGGGGGGGGCCACGGCGTTGGTGGCAATTGTTGGAG
GTGATGTGGTATGGAAGGCAGGGTATTGGTACGTCCTCTTCCCCTGCCTG
TCAGGCGCGTTGCTCATGCTGCTCGTGGCCTTGGTTTGTAATAACTTGGA
CCCGGATCGCCATTATCCGCAGTATTGGAGTCATTATTTCCCATTATACG
AGAAGAGCAAGCTCTTGATTTTTGATTGTTGCGGTGCTGCTGGTGCTGGT
GCTGCTGGTGCTGCTGGTGCCGCTGGGACGGTGGGCATGCCTTCCTTTTC
CTCCCCCTCCCGCTCGAACAGCCCCCCTCCCTCCTGTCCTCAAGTATCCT
CCATTGAGTTGGTGGATGATGACTGGGTTGATGAAAGTGGGCCTTCGTTC
ACGCCGCGTGGATCGCAAACACCAAGCAATGGATGGGCGGCAGATGCAGT
GGCAACAAGAGGAGCAGGAGAGGAAAGTGGACATATTCTTAATTCGCAGG
TGCTGGAGGAGGAGGACACTTCGTCGCCCGTGTAAATGTGGAAACCCTCC
ACCCACACGCAGCATCGGCCAGGAGATGAAGATAACAATGGGCACGAGAC
CAGCAGCAACAGCAGCGATGGGAATTGTGCCGTTGGGGGCGGAGCGGGAT
ACAAGGCCAAGGAGGCACTCAGCCAATACTTTAAAAAATGGCTTGGCGTA
TCCAACAAAAGAGACACCCACCGTGTTCCATCCCTTCGACACAGCTTTGT
GTCCTTCCTCCAAGCCACATTCAGTCTCACCACCCTTGCATTCTTGGACT
ACTTCATGCAATCTAAAGAAAGCTACATCATGTTTCTTGTCGGTTCCTTT
GGTGCCACGGCCGTCCTGCTTTACTCTGCACCCAGCTCCCCACTAGCCCA
ACCCCGCGCCGTCCTAATGGGCCACTTCGTCTCGGCCCTCGCTGGTGTGA
CCGTGTACAAAATCATGGGTAACATCCCTTACTTTTCCGCAGGTGTTGCC
GTTGGGCTCGCTATTTTTTTAATGGAACGGACAAATTCGACACATCCGCC
GGGGGGGGCCACGGCGTTGGTGGCAATTGTTGGAGGTGATGTGGTATGGA
AGGCAGGGTATTGGTACGTCCTCTTCCCCTGCCTGTCAGGCGCGTTGCTC
ATGCTGCTCGTGGCCTTGGTTTGTAATAACTTGGACCCGGATCGCCATTA
TCCGCAGTATTGGAGTCATTATTTCCCATTATACGAGAAGAGCAAGCTCT
TGATTTTTGATTGTTGCGGTGCTGCTGGTGCTGGTGCTGCTGGTGCTGCT
GGTGCCGCTGGGACGGTGGGCATGCCTTCCTTTTCCTCCCCCTCCCGCTC
GAACAGCCCCCCTCCCTCCTGTCCTCAAGTATCCTCCATTGAGTTGGTGG
ATGATGACTGGGTTGATGAAAGTGGGCCTTCGTTCACGCCGCGTGGATCG
CAAACACCAAGCAATGGATGGGCGGCAGATGCAGTGGCAACAAGAGGAGC
AGGAGAGGAAAGTGGACATATTCTTAATTCGCAGGTGCTGGAGGAGGAGG
ACACTTCGTCGCCCGTGTAA

Synonyms

Publications