jgi.p|Nanoce1779_2|578317, mRNA_1888 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578317
Unique NamemRNA_1888
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length911
Alignment locationscaffold_4:273014..273924 +

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Properties
Property NameValue
TranscriptId578403
TrackFilteredModels2
ProteinId578317
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:273014..273924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578317gene_1888Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578317mRNA_1888-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1888CDS_1888Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1888 ID=mRNA_1888|Name=jgi.p|Nanoce1779_2|578317|organism=Nannochloropsis oceanica|type=mRNA|length=911bp
GTACACGCACAGAGCCGACACCAAATCAACAACCAGCACCAATGGCCACT
CCACCCGCCACCACCACCACCGGCAGCAGCAGCAGTAGTACACCTCCCGA
GGAGCCGGATCAAGCCTCTTTCTGGGATCATATCTGGGTGAATGAACAGA
TACCAAAGTTTGATGTCCAATCGCCCTCTCCTTGCCTGCGTCAGTATCTC
GCGCAGCGTAAGCTCCCTCTGACAGGCCGAGCCCTTGTCCCAGGGTGTGG
GAGAGGGTATGATGTGCTGGCGCTGGCGAAAGCGGAGGGAGCAGAGTGGA
AGGAAATTATTGGTTTAGATATATCGCCCACGGGTGTGGCAGCTGCGCGG
ACGTATCTAGAAGGAGCACTGGGGAAGGAAGAAGAGGAGATGAAGAGTTG
GTGCCATGTGGAGGAAGGAGATTTTTTCAAGCTGAAAGTAGAGAGAGAGG
AAGGGTTCACCTTTATTTATGACTATACCTTTTTCTGTGCCATTAAACCT
GACAAAAGGGAGGCGTGGGCACGGCAGATGCAGGCCTTGCTAATTCCTGG
GACGGGCGTGTTGATGACGCTGATTTTCCCCATTTGTGAAAAGGAGGGAG
GGCCGCCATATCGCGTGAGCTTGGAGGGCATGAGAGAGCTATTGGAACCT
TTGGGCTTTGTGGCCGAGGTTCTTGAGATGCTGCCACCGGGCTTAAGTCA
CCCGGGGCGAGATGGGACAACGGGGCCATGGAAGGCATCATCTGGAGTGG
GACTGTGGAAGCGTCTGCAGGGACGGGATGGGGAGCAAGGTCAAAATTAA
AGGAGGGAAAAGGGGGGGGTCACAAAATGAGTGCGCTGTAAATGTTCTTG
TTGTGAGAGAAAGGGGGCATCTGCTCTGAACGTAGGAGTCCCCGACGGGA
GGCACACATAC
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protein sequence of jgi.p|Nanoce1779_2|578317

>mRNA_1888-protein ID=mRNA_1888-protein|Name=jgi.p|Nanoce1779_2|578317|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MATPPATTTTGSSSSSTPPEEPDQASFWDHIWVNEQIPKFDVQSPSPCLR
QYLAQRKLPLTGRALVPGCGRGYDVLALAKAEGAEWKEIIGLDISPTGVA
AARTYLEGALGKEEEEMKSWCHVEEGDFFKLKVEREEGFTFIYDYTFFCA
IKPDKREAWARQMQALLIPGTGVLMTLIFPICEKEGGPPYRVSLEGMREL
LEPLGFVAEVLEMLPPGLSHPGRDGTTGPWKASSGVGLWKRLQGRDGEQG
QN*
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mRNA from alignment at scaffold_4:273014..273924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1888 ID=mRNA_1888|Name=jgi.p|Nanoce1779_2|578317|organism=Nannochloropsis oceanica|type=mRNA|length=911bp|location=Sequence derived from alignment at scaffold_4:273014..273924+ (Nannochloropsis oceanica)
GTACACGCACAGAGCCGACACCAAATCAACAACCAGCACCAATGGCCACT
CCACCCGCCACCACCACCACCGGCAGCAGCAGCAGTAGTACACCTCCCGA
GGAGCCGGATCAAGCCTCTTTCTGGGATCATATCTGGGTGAATGAACAGA
TACCAAAGTTTGATGTCCAATCGCCCTCTCCTTGCCTGCGTCAGTATCTC
GCGCAGCGTAAGCTCCCTCTGACAGGCCGAGCCCTTGTCCCAGGGTGTGG
GAGAGGGTATGATGTGCTGGCGCTGGCGAAAGCGGAGGGAGCAGAGTGGA
AGGAAATTATTGGTTTAGATATATCGCCCACGGGTGTGGCAGCTGCGCGG
ACGTATCTAGAAGGAGCACTGGGGAAGGAAGAAGAGGAGATGAAGAGTTG
GTGCCATGTGGAGGAAGGAGATTTTTTCAAGCTGAAAGTAGAGAGAGAGG
AAGGGTTCACCTTTATTTATGACTATACCTTTTTCTGTGCCATTAAACCT
GACAAAAGGGAGGCGTGGGCACGGCAGATGCAGGCCTTGCTAATTCCTGG
GACGGGCGTGTTGATGACGCTGATTTTCCCCATTTGTGAAAAGGAGGGAG
GGCCGCCATATCGCGTGAGCTTGGAGGGCATGAGAGAGCTATTGGAACCT
TTGGGCTTTGTGGCCGAGGTTCTTGAGATGCTGCCACCGGGCTTAAGTCA
CCCGGGGCGAGATGGGACAACGGGGCCATGGAAGGCATCATCTGGAGTGG
GACTGTGGAAGCGTCTGCAGGGACGGGATGGGGAGCAAGGTCAAAATTAA
AGGAGGGAAAAGGGGGGGGTCACAAAATGAGTGCGCTGTAAATGTTCTTG
TTGTGAGAGAAAGGGGGCATCTGCTCTGAACGTAGGAGTCCCCGACGGGA
GGCACACATAC
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Coding sequence (CDS) from alignment at scaffold_4:273014..273924+

>mRNA_1888 ID=mRNA_1888|Name=jgi.p|Nanoce1779_2|578317|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_4:273014..273924+ (Nannochloropsis oceanica)
ATGGCCACTCCACCCGCCACCACCACCACCGGCAGCAGCAGCAGTAGTAC
ACCTCCCGAGGAGCCGGATCAAGCCTCTTTCTGGGATCATATCTGGGTGA
ATGAACAGATACCAAAGTTTGATGTCCAATCGCCCTCTCCTTGCCTGCGT
CAGTATCTCGCGCAGCGTAAGCTCCCTCTGACAGGCCGAGCCCTTGTCCC
AGGGTGTGGGAGAGGGTATGATGTGCTGGCGCTGGCGAAAGCGGAGGGAG
CAGAGTGGAAGGAAATTATTGGTTTAGATATATCGCCCACGGGTGTGGCA
GCTGCGCGGACGTATCTAGAAGGAGCACTGGGGAAGGAAGAAGAGGAGAT
GAAGAGTTGGTGCCATGTGGAGGAAGGAGATTTTTTCAAGCTGAAAGTAG
AGAGAGAGGAAGGGTTCACCTTTATTTATGACTATACCTTTTTCTGTGCC
ATTAAACCTGACAAAAGGGAGGCGTGGGCACGGCAGATGCAGGCCTTGCT
AATTCCTGGGACGGGCGTGTTGATGACGCTGATTTTCCCCATTTGTGAAA
AGGAGGGAGGGCCGCCATATCGCGTGAGCTTGGAGGGCATGAGAGAGCTA
TTGGAACCTTTGGGCTTTGTGGCCGAGGTTCTTGAGATGCTGCCACCGGG
CTTAAGTCACCCGGGGCGAGATGGGACAACGGGGCCATGGAAGGCATCAT
CTGGAGTGGGACTGTGGAAGCGTCTGCAGGGACGGGATGGGGAGCAAGGT
CAAAATTAA
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Synonyms
Publications