jgi.p|Nanoce1779_2|578312, mRNA_1887 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578312
Unique Name	mRNA_1887
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1982
Alignment location	scaffold_4:270398..272497 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578398
Track	FilteredModels2
ProteinId	578312

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:270398..272497 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578312	gene_1887	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578312	mRNA_1887-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1887	CDS_1887	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:270398..272497+
coding sequence from alignment at scaffold_4:270398..272497+

mRNA sequence

>mRNA_1887 ID=mRNA_1887|Name=jgi.p|Nanoce1779_2|578312|organism=Nannochloropsis oceanica|type=mRNA|length=1982bp
AGCGCCACATGAATAATTTTGCCAGCCCTCCAGGAGACGCATCGCTTCCA
GCTATCGCTTTCGCTTGAGCACCAAAGAGATCCAAGCCCGAAACCTCAAG
CTCAACTCGCCCCAAACCTGAAACACTCACAGGGTCGTCAACAAGCACCT
CGTCGCACAACACACATGCTCCGCGTGCTTTTCCCTCGGCAGACAGCAGC
GTCGTCGCAGACGGTGCGCCTGGTGCTTGCCGCGTCCTTGTCCTCGTCCT
CGTCTGTGTCATCTTCAAGGCCAAGTCAAGCGGCCCGTCCCCGCCGTTCT
GTTAGTTCCCGCTGGTCCACAGGTGCCAGGTCCGCGTTGGCTGCAACGGG
TGCGTTAGTGACGGCAGGGATGGCCGTGGCATTGTGCGAGACCGAGGAGA
TCAATGACGAAAGGTCCTTGACGGGGGCCGTTGAGGGCGTGCCAATCAAA
GCTGACCTGACCAACCAAGAATACAAACTCGCCCGGCAAAACACAACGCG
CAAGGTCAAGAATCACTACCAGTACGTGATTATGGGGGCGGGAACGACGG
CATATGCAGCCATCGAGACCATTTTTAACCGCCAGCCCCAAGCTGATATT
TTGCTAATTTCCAACGAGGCCGCCTTGCCCCAACCGGACGTCTTCCGGCA
TCACGCCCTCTCCGCGCCGCTCCTTCACTCCTACAACGAATGGCGCCGTC
ACACTACCTCCAAGCTCGAGTCGGAACCCGACGCCATATCTTCTGCTCCC
ATAACTTTGCTGCTCAACAACGAAAAAAGCCTGCAGCTGGACGTAGACAA
GCAACGCATCCTCCTGCAAGATGGCTCATACATCACCTACGACCGCTGCC
TCATCGCCACCGCTGGCAAGGACCGAGGTCTCTGGGCGGTGGATCGTCGT
AAGATCTCCTATTCTTTGCGTGATCGAATCAATACCTGCAGTACCATCTA
CGATTTCGAGCAGCTGGACAGTCTCCATAATATTATGGCGAACAAGCACG
TGTCTGTTGTGGGAGGCGGGTTTCTGGGCACGGAGCTGGCGTTGGCTTTG
GCAGTGCGGGGGCGGGAAACAGGGATGACGGTCTCTCAGATCTATGCGGA
GAAGGGGCCCTTGTGTCGATACATTCCAAATTATTTAGGGATGCACGTGC
AACGGCTTTTGCATGGCGCGGGAGTAAGATATGTGAATGAACGGTTGGTC
ACGGATGTGAAGGATGGGGGTGAGGATGCCCCCGGGGCGCTGAGGATCTC
GTTGATGGGCTGGAATAAGGAGAGTATATACACGGATTACGCGGTATTGG
CGCCGACGCACGTGGAGCCATGCGTGGAGGTGGCCGTGAAGAGTGGGCTG
GAGCTGGACGGTTCGACCAACGGGATCGCGGTGAATCAGCAATTGGAGGC
TGTGGGTAATGTGTTTGTTGCAGGGGGGGTGGCCAGTTACTACGATGCGG
CGTTGGGGAGGCGGAGGGTCGAGATGTTTGACCACTCGATCAACAGTGGG
ATTTTGGCGGGAAAGAATATGACAGCGGATGAGCAGCGGCCAAAGAGACG
GTATACGCATCAGCCGATGTACCGGAGTTTATTGAAGGATATTGACGTGG
TTTGTGATGTGGTTGGCGAAATCGACTCGAAGATGCACACGGTGGGGATA
TGGGTGAATAACCCGGTGGAGACGGAGGATGAGGCGGAGACGTACCAGCG
CGGCATCATTTATTACTTGCGCGAGAATCGCATCCGAGGCATCATGCTCT
GGAACGCCAGTGATTACTTAGAACGCGCTCGGGAGGTAATCAATGCTCAG
CCCAACATCCATAACGTGGATATGTTGAAGAGGCAGATTGCCTTGGCCCC
CGATGCCTGGCTGCGAGTGCTGGAGACATCGGCCGATTAGAAGAAGGAGG
GAGGGAGGGAGGGAGCGAGGGAGAGTTGCCTTTGGAAGTGAAAGCACAAT
GCTCGTTCTTGGGAAAGAAAGATGGGGTGAAG

protein sequence of jgi.p|Nanoce1779_2|578312

>mRNA_1887-protein ID=mRNA_1887-protein|Name=jgi.p|Nanoce1779_2|578312|organism=Nannochloropsis oceanica|type=polypeptide|length=575bp
MLRVLFPRQTAASSQTVRLVLAASLSSSSSVSSSRPSQAARPRRSVSSRW
STGARSALAATGALVTAGMAVALCETEEINDERSLTGAVEGVPIKADLTN
QEYKLARQNTTRKVKNHYQYVIMGAGTTAYAAIETIFNRQPQADILLISN
EAALPQPDVFRHHALSAPLLHSYNEWRRHTTSKLESEPDAISSAPITLLL
NNEKSLQLDVDKQRILLQDGSYITYDRCLIATAGKDRGLWAVDRRKISYS
LRDRINTCSTIYDFEQLDSLHNIMANKHVSVVGGGFLGTELALALAVRGR
ETGMTVSQIYAEKGPLCRYIPNYLGMHVQRLLHGAGVRYVNERLVTDVKD
GGEDAPGALRISLMGWNKESIYTDYAVLAPTHVEPCVEVAVKSGLELDGS
TNGIAVNQQLEAVGNVFVAGGVASYYDAALGRRRVEMFDHSINSGILAGK
NMTADEQRPKRRYTHQPMYRSLLKDIDVVCDVVGEIDSKMHTVGIWVNNP
VETEDEAETYQRGIIYYLRENRIRGIMLWNASDYLERAREVINAQPNIHN
VDMLKRQIALAPDAWLRVLETSAD*

mRNA from alignment at scaffold_4:270398..272497+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1887 ID=mRNA_1887|Name=jgi.p|Nanoce1779_2|578312|organism=Nannochloropsis oceanica|type=mRNA|length=2100bp|location=Sequence derived from alignment at scaffold_4:270398..272497+ (Nannochloropsis oceanica)
AGCGCCACATGAATAATTTTGCCAGCCCTCCAGGAGACGCATCGCTTCCA
GCTATCGCTTTCGCTTGAGCACCAAAGAGATCCAAGCCCGAAACCTCAAG
CTCAACTCGCCCCAAACCTGAAACACTCACAGGGTCGTCAACAAGCACCT
CGTCGCACAACACACATGCTCCGCGTGCTTTTCCCTCGGCAGACAGCAGC
GTCGTCGCAGACGGTGCGCCTGGTGCTTGCCGCGTCCTTGTCCTCGTCCT
CGTCTGTGTCATCTTCAAGGCCAAGTCAAGCGGCCCGTCCCCGCCGTTCT
GTTAGTTCCCGCTGGTCCACAGGTGCCAGGTCCGCGTTGGCTGCAACGGG
TGCGTTAGTGACGGCAGGGATGGCCGTGGCATTGTGCGAGACCGAGGAGA
TCAATGACGAAAGGTCCTTGACGGGGGCCGTTGAGGGCGTGCCAATCAAA
GCTGACCTGACCAACCAAGAATACAAACTCGCCCGGCAAAACACAACGCG
CAAGGTCAAGAATCACTACCAGTACGTGATTATGGGGGCGGGAACGACGG
CATATGCAGCCATCGAGACCATTTTTAACCGCCAGCCCCAAGCTGATATT
TTGCTAATTTCCAACGAGGCCGCCTTGCCCCAACCGGACGTCTTCCGGCA
TCACGCCCTCTCCGCGCCGCTCCTTCACTCCTACAACGAATGGCGCCGTC
ACACTACCTCCAAGCTCGAGTCGGAACCCGACGCCATATCTTCTGCTCCC
ATAACTTTGCTGCTCAACAACGAAAAAAGCCTGCAGCTGGACGTAGACAA
GCAACGCATCCTCCTGCAAGATGGCTCATACATCACCTACGACCGCTGCC
TCATCGCCACCGCTGGCAAGGACCGAGGTCTCTGGGCGGTGGATCGTCGT
AAGATCTCCTATTCTTTGCGTGATCGAATCAATACCTGCAGTACCATCTA
CGATTTCGAGCAGCTGGACAGTCTCCATAATATTATGGCGAACAAGCACG
TGTCTGTTGTGGGAGGCGGGTTTCTGGGCACGGAGCTGGCGTTGGCTTTG
GCAGTGCGGGGGCGGGAAACAGGGATGACGGTCTCTCAGATCTATGCGGA
GAAGGGGCCCTTGTGTCGATACATTCCAAATTATTTAGGGATGCACGTGC
AACGGCTTTTGCATGGCGCGGGAGTAAGATATGTGAATGAACGGTTGGTC
ACGGATGTGAAGGATGGGGGTGAGGATGCCCCCGGGGCGCTGAGGATCTC
GTTGATGGGCTGGAATAAGGAGAGTATATACACGGATTACGCGGTATTGG
CGCCGACGCACGTGGAGCCATGCGTGGAGGTGGCCGTGAAGAGTGGGCTG
GAGCTGGACGGTTCGACCAACGGGATCGCGGTGAATCAGCAATTGGAGGC
TGTGGGTAATGTGTTTGTTGCAGGGGGGGTGGCCAGTTACTACGATGCGG
CGTTGGGGAGGCGGAGGGTCGAGATGTTTGACCACTCGATCAACAGTGGG
ATTTTGGCGGGAAAGAATATGACAGCGGATGAGCAGCGGCCAAAGAGACG
GTATACGCATCAGCCGATGTACCGGAGTTTATTGAAGGATATTGACGTGG
TTTGTGATGTGGTTGGCGAAATCGACTCGAAGATGCACACGGTGGGGATA
TGGGTGAATAACCCGGTGGAGACGGAGGATGAGGCGGAGACGTACCAGCG
CGGCATCATTTATTACTTGCGCGAGAATCGGTGAGCAGGAGTAGGTCGGC
CTTCATGCCTTGCACAAGACATTTGTAACTCACTTTCCCTACCTCTCACC
CTCCCTCCCTCCCTCCCCCCGTCCCCCCCTCCCTTCCTCTCTCCCCAGCA
TCCGAGGCATCATGCTCTGGAACGCCAGTGATTACTTAGAACGCGCTCGG
GAGGTAATCAATGCTCAGCCCAACATCCATAACGTGGATATGTTGAAGAG
GCAGATTGCCTTGGCCCCCGATGCCTGGCTGCGAGTGCTGGAGACATCGG
CCGATTAGAAGAAGGAGGGAGGGAGGGAGGGAGCGAGGGAGAGTTGCCTT
TGGAAGTGAAAGCACAATGCTCGTTCTTGGGAAAGAAAGATGGGGTGAAG

Coding sequence (CDS) from alignment at scaffold_4:270398..272497+

>mRNA_1887 ID=mRNA_1887|Name=jgi.p|Nanoce1779_2|578312|organism=Nannochloropsis oceanica|type=CDS|length=3450bp|location=Sequence derived from alignment at scaffold_4:270398..272497+ (Nannochloropsis oceanica)
ATGCTCCGCGTGCTTTTCCCTCGGCAGACAGCAGCGTCGTCGCAGACGGT
GCGCCTGGTGCTTGCCGCGTCCTTGTCCTCGTCCTCGTCTGTGTCATCTT
CAAGGCCAAGTCAAGCGGCCCGTCCCCGCCGTTCTGTTAGTTCCCGCTGG
TCCACAGGTGCCAGGTCCGCGTTGGCTGCAACGGGTGCGTTAGTGACGGC
AGGGATGGCCGTGGCATTGTGCGAGACCGAGGAGATCAATGACGAAAGGT
CCTTGACGGGGGCCGTTGAGGGCGTGCCAATCAAAGCTGACCTGACCAAC
CAAGAATACAAACTCGCCCGGCAAAACACAACGCGCAAGGTCAAGAATCA
CTACCAGTACGTGATTATGGGGGCGGGAACGACGGCATATGCAGCCATCG
AGACCATTTTTAACCGCCAGCCCCAAGCTGATATTTTGCTAATTTCCAAC
GAGGCCGCCTTGCCCCAACCGGACGTCTTCCGGCATCACGCCCTCTCCGC
GCCGCTCCTTCACTCCTACAACGAATGGCGCCGTCACACTACCTCCAAGC
TCGAGTCGGAACCCGACGCCATATCTTCTGCTCCCATAACTTTGCTGCTC
AACAACGAAAAAAGCCTGCAGCTGGACGTAGACAAGCAACGCATCCTCCT
GCAAGATGGCTCATACATCACCTACGACCGCTGCCTCATCGCCACCGCTG
GCAAGGACCGAGGTCTCTGGGCGGTGGATCGTCGTAAGATCTCCTATTCT
TTGCGTGATCGAATCAATACCTGCAGTACCATCTACGATTTCGAGCAGCT
GGACAGTCTCCATAATATTATGGCGAACAAGCACGTGTCTGTTGTGGGAG
GCGGGTTTCTGGGCACGGAGCTGGCGTTGGCTTTGGCAGTGCGGGGGCGG
GAAACAGGGATGACGGTCTCTCAGATCTATGCGGAGAAGGGGCCCTTGTG
TCGATACATTCCAAATTATTTAGGGATGCACGTGCAACGGCTTTTGCATG
GCGCGGGAGTAAGATATGTGAATGAACGGTTGGTCACGGATGTGAAGGAT
GGGGGTGAGGATGCCCCCGGGGCGCTGAGGATCTCGTTGATGGGCTGGAA
TAAGGAGAGTATATACACGGATTACGCGGTATTGGCGCCGACGCACGTGG
AGCCATGCGTGGAGGTGGCCGTGAAGAGTGGGCTGGAGCTGGACGGTTCG
ACCAACGGGATCGCGGTGAATCAGCAATTGGAGGCTGTGGGTAATGTGTT
TGTTGCAGGGGGGGTGGCCAGTTACTACGATGCGGCGTTGGGGAGGCGGA
GGGTCGAGATGTTTGACCACTCGATCAACAGTGGGATTTTGGCGGGAAAG
AATATGACAGCGGATGAGCAGCGGCCAAAGAGACGGTATACGCATCAGCC
GATGTACCGGAGTTTATTGAAGGATATTGACGTGGTTTGTGATGTGGTTG
GCGAAATCGACTCGAAGATGCACACGGTGGGGATATGGGTGAATAACCCG
GTGGAGACGGAGGATGAGGCGGAGACGTACCAGCGCGGCATCATTTATTA
CTTGCGCGAGAATCGCATCCGAGGCATCATGCTCTGGAACGCCAGTGATT
ACTTAGAACGCGCTCGGGAGGTAATCAATGCTCAGCCCAACATCCATAAC
GTGGATATGTTGAAGAGGCAGATTGCCTTGGCCCCCGATGCCTGGCTGCG
AGTGCTGGAGACATCGGCCGATTAGATGCTCCGCGTGCTTTTCCCTCGGC
AGACAGCAGCGTCGTCGCAGACGGTGCGCCTGGTGCTTGCCGCGTCCTTG
TCCTCGTCCTCGTCTGTGTCATCTTCAAGGCCAAGTCAAGCGGCCCGTCC
CCGCCGTTCTGTTAGTTCCCGCTGGTCCACAGGTGCCAGGTCCGCGTTGG
CTGCAACGGGTGCGTTAGTGACGGCAGGGATGGCCGTGGCATTGTGCGAG
ACCGAGGAGATCAATGACGAAAGGTCCTTGACGGGGGCCGTTGAGGGCGT
GCCAATCAAAGCTGACCTGACCAACCAAGAATACAAACTCGCCCGGCAAA
ACACAACGCGCAAGGTCAAGAATCACTACCAGTACGTGATTATGGGGGCG
GGAACGACGGCATATGCAGCCATCGAGACCATTTTTAACCGCCAGCCCCA
AGCTGATATTTTGCTAATTTCCAACGAGGCCGCCTTGCCCCAACCGGACG
TCTTCCGGCATCACGCCCTCTCCGCGCCGCTCCTTCACTCCTACAACGAA
TGGCGCCGTCACACTACCTCCAAGCTCGAGTCGGAACCCGACGCCATATC
TTCTGCTCCCATAACTTTGCTGCTCAACAACGAAAAAAGCCTGCAGCTGG
ACGTAGACAAGCAACGCATCCTCCTGCAAGATGGCTCATACATCACCTAC
GACCGCTGCCTCATCGCCACCGCTGGCAAGGACCGAGGTCTCTGGGCGGT
GGATCGTCGTAAGATCTCCTATTCTTTGCGTGATCGAATCAATACCTGCA
GTACCATCTACGATTTCGAGCAGCTGGACAGTCTCCATAATATTATGGCG
AACAAGCACGTGTCTGTTGTGGGAGGCGGGTTTCTGGGCACGGAGCTGGC
GTTGGCTTTGGCAGTGCGGGGGCGGGAAACAGGGATGACGGTCTCTCAGA
TCTATGCGGAGAAGGGGCCCTTGTGTCGATACATTCCAAATTATTTAGGG
ATGCACGTGCAACGGCTTTTGCATGGCGCGGGAGTAAGATATGTGAATGA
ACGGTTGGTCACGGATGTGAAGGATGGGGGTGAGGATGCCCCCGGGGCGC
TGAGGATCTCGTTGATGGGCTGGAATAAGGAGAGTATATACACGGATTAC
GCGGTATTGGCGCCGACGCACGTGGAGCCATGCGTGGAGGTGGCCGTGAA
GAGTGGGCTGGAGCTGGACGGTTCGACCAACGGGATCGCGGTGAATCAGC
AATTGGAGGCTGTGGGTAATGTGTTTGTTGCAGGGGGGGTGGCCAGTTAC
TACGATGCGGCGTTGGGGAGGCGGAGGGTCGAGATGTTTGACCACTCGAT
CAACAGTGGGATTTTGGCGGGAAAGAATATGACAGCGGATGAGCAGCGGC
CAAAGAGACGGTATACGCATCAGCCGATGTACCGGAGTTTATTGAAGGAT
ATTGACGTGGTTTGTGATGTGGTTGGCGAAATCGACTCGAAGATGCACAC
GGTGGGGATATGGGTGAATAACCCGGTGGAGACGGAGGATGAGGCGGAGA
CGTACCAGCGCGGCATCATTTATTACTTGCGCGAGAATCGCATCCGAGGC
ATCATGCTCTGGAACGCCAGTGATTACTTAGAACGCGCTCGGGAGGTAAT
CAATGCTCAGCCCAACATCCATAACGTGGATATGTTGAAGAGGCAGATTG
CCTTGGCCCCCGATGCCTGGCTGCGAGTGCTGGAGACATCGGCCGATTAG

Synonyms

Publications