jgi.p|Nanoce1779_2|578308, mRNA_1886 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578308
Unique NamemRNA_1886
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length904
Alignment locationscaffold_4:268920..270246 +

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Properties
Property NameValue
TranscriptId578394
TrackFilteredModels2
ProteinId578308
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:268920..270246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578308gene_1886Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578308mRNA_1886-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1886CDS_1886Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1886 ID=mRNA_1886|Name=jgi.p|Nanoce1779_2|578308|organism=Nannochloropsis oceanica|type=mRNA|length=904bp
ACAGCTCTCCTTCGCACGAAGCCTCGTCAGCAGCACCATGGCCACGGCCT
CCCTCGTCCGCGCAGTGGGCAAGCTGCAGCCGGTAGGCACGACATTCTTG
CTGTGTGACATCCAGGAGCGCTTTCGGGACGTAATTTGGCATTTTCCTCA
GGTCATCCGCACAGCCAAGTTGATGACCGCGGTGGGGAAGCATTTGCAGA
TCCCCACCTTGGCCACGGAGCAGTACCCCAAAGCATTCGGTGCCACGGTG
GCTGAACTGGACGTGGCCAACGTTGAGTACCCTATCCCGACCTTCGAGAA
GAAGCTCTTCAGCATGATCACCGAGGACGTCAAGGCCAAGATAGCGGAGA
CGCCGGAACGGAAAACATTCGTTTTGTTTGGAATCGAGGCCCATGTCTGC
GTGCAGCAGACGGCCTTGGACCTGCTTGAACAGGGCTATGCCGTTCACGT
GCTCGTGGACGGGGTGTCGTCGCAAAGGGCACACGACCGAGCTGTAGCTT
TGAGAAGGATGGAAAATGCAGGGGCTCATCTGACGACGGCGGAGAGTCTA
GTTTTCATGTTGCTTGGAGGCGCATCGCATCCTCAATTCCGCACGATTGC
GGGCTTAATCAAGGAGCATGCGGCGGGGACGCCGAGCCCGTTTGAGGAGC
TAGTGAAAACCAACGCAGCGCTTTAAAGTAATTTAGACATGAAAGGGGGA
GTAAATAGACGATAGGTGTGTGTTGTAGAAAGCGAGGCCTCAGCAAGGAA
AAGAAGAAAGGGAGGCCTGGGGGGGTTATCGGCGGAAGGACTCATCAGAT
GAAATTTAGAAAGAAATGAGCTAACCTGAGAGGTAACGAGTTGTTATTGA
TCGTCTAACCTCCCTCTTGACGCTATGGTCTCCATTGTGTGCTATTTCAT
GTGT
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protein sequence of jgi.p|Nanoce1779_2|578308

>mRNA_1886-protein ID=mRNA_1886-protein|Name=jgi.p|Nanoce1779_2|578308|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MATASLVRAVGKLQPVGTTFLLCDIQERFRDVIWHFPQVIRTAKLMTAVG
KHLQIPTLATEQYPKAFGATVAELDVANVEYPIPTFEKKLFSMITEDVKA
KIAETPERKTFVLFGIEAHVCVQQTALDLLEQGYAVHVLVDGVSSQRAHD
RAVALRRMENAGAHLTTAESLVFMLLGGASHPQFRTIAGLIKEHAAGTPS
PFEELVKTNAAL*
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mRNA from alignment at scaffold_4:268920..270246+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1886 ID=mRNA_1886|Name=jgi.p|Nanoce1779_2|578308|organism=Nannochloropsis oceanica|type=mRNA|length=1327bp|location=Sequence derived from alignment at scaffold_4:268920..270246+ (Nannochloropsis oceanica)
ACAGCTCTCCTTCGCACGAAGCCTCGTCAGCAGCACCATGGCCACGGCCT
CCCTCGTCCGCGCAGTGGGCAAGCTGCAGCCGGTAGGCACGACATTCTTG
CTGTGTGACATCCAGGAGCGCTTTCGGGACGTAATTTGGCATTTTCCTCA
GGTGAGGGTAGGAGTGCGGACATACGGAAGAAGGACGGGGAATAAGGGAG
GGGAAGATGTGCCATCGGATGCCACTCATTCAATCATACATGGAGCGAAA
ATCATAAAAAGTGGCTCAATGTCCGTCCAATTCGCCACCCTTATTTTTTA
TTGTTTGTCCCTAGGTCATCCGCACAGCCAAGTTGATGACCGCGGTGGGG
AAGCATTTGCAGATCCCCACCTTGGCCACGGAGCAGTACCCCAAAGCATT
CGGTGCCACGGTAAGATATAGAGTGGGTTGATGGATCGCGCAAAGGGGGA
GTAAGAAAGATAGAGGGAGAGAGGTTGGGGGGGAGAGATGAGACGGATGA
CAGCCAGCGTCTGGTCAGCGGCTCACACAGACATGCGTGCGCATCAACAC
TTGCGTTATTGGTGAGTGACCATGCCAGGGACCGATACAAGTTTCTACAA
TTTGGAAGTAAAGGGACAAGGGAAAGTAAGAGACCAACTCATCCCCACCT
AACCTGTCCCACCTATTCAGGTGGCTGAACTGGACGTGGCCAACGTTGAG
TACCCTATCCCGACCTTCGAGAAGAAGCTCTTCAGCATGATCACCGAGGA
CGTCAAGGCCAAGATAGCGGAGACGCCGGAACGGAAAACATTCGTTTTGT
TTGGAATCGAGGCCCATGTCTGCGTGCAGCAGACGGCCTTGGACCTGCTT
GAACAGGGCTATGCCGTTCACGTGCTCGTGGACGGGGTGTCGTCGCAAAG
GGCACACGACCGAGCTGTAGCTTTGAGAAGGATGGAAAATGCAGGGGCTC
ATCTGACGACGGCGGAGAGTCTAGTTTTCATGTTGCTTGGAGGCGCATCG
CATCCTCAATTCCGCACGATTGCGGGCTTAATCAAGGAGCATGCGGCGGG
GACGCCGAGCCCGTTTGAGGAGCTAGTGAAAACCAACGCAGCGCTTTAAA
GTAATTTAGACATGAAAGGGGGAGTAAATAGACGATAGGTGTGTGTTGTA
GAAAGCGAGGCCTCAGCAAGGAAAAGAAGAAAGGGAGGCCTGGGGGGGTT
ATCGGCGGAAGGACTCATCAGATGAAATTTAGAAAGAAATGAGCTAACCT
GAGAGGTAACGAGTTGTTATTGATCGTCTAACCTCCCTCTTGACGCTATG
GTCTCCATTGTGTGCTATTTCATGTGT
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Coding sequence (CDS) from alignment at scaffold_4:268920..270246+

>mRNA_1886 ID=mRNA_1886|Name=jgi.p|Nanoce1779_2|578308|organism=Nannochloropsis oceanica|type=CDS|length=1917bp|location=Sequence derived from alignment at scaffold_4:268920..270246+ (Nannochloropsis oceanica)
ATGGCCACGGCCTCCCTCGTCCGCGCAGTGGGCAAGCTGCAGCCGGTAGG
CACGACATTCTTGCTGTGTGACATCCAGGAGCGCTTTCGGGACGTAATTT
GGCATTTTCCTCAGGTCATCCGCACAGCCAAGTTGATGACCGCGGTGGGG
AAGCATTTGCAGATCCCCACCTTGGCCACGGAGCAGTACCCCAAAGCATT
CGGTGCCACGGTGGCTGAACTGGACGTGGCCAACGTTGAGTACCCTATCC
CGACCTTCGAGAAGAAGCTCTTCAGCATGATCACCGAGGACGTCAAGGCC
AAGATAGCGGAGACGCCGGAACGGAAAACATTCGTTTTGTTTGGAATCGA
GGCCCATGTCTGCGTGCAGCAGACGGCCTTGGACCTGCTTGAACAGGGCT
ATGCCGTTCACGTGCTCGTGGACGGGGTGTCGTCGCAAAGGGCACACGAC
CGAGCTGTAGCTTTGAGAAGGATGGAAAATGCAGGGGCTCATCTGACGAC
GGCGGAGAGTCTAGTTTTCATGTTGCTTGGAGGCGCATCGCATCCTCAAT
TCCGCACGATTGCGGGCTTAATCAAGGAGCATGCGGCGGGGACGCCGAGC
CCGTTTGAGGAGCTAGTGAAAACCAACGCAGCGCTTTAAATGGCCACGGC
CTCCCTCGTCCGCGCAGTGGGCAAGCTGCAGCCGGTAGGCACGACATTCT
TGCTGTGTGACATCCAGGAGCGCTTTCGGGACGTAATTTGGCATTTTCCT
CAGGTCATCCGCACAGCCAAGTTGATGACCGCGGTGGGGAAGCATTTGCA
GATCCCCACCTTGGCCACGGAGCAGTACCCCAAAGCATTCGGTGCCACGG
TGGCTGAACTGGACGTGGCCAACGTTGAGTACCCTATCCCGACCTTCGAG
AAGAAGCTCTTCAGCATGATCACCGAGGACGTCAAGGCCAAGATAGCGGA
GACGCCGGAACGGAAAACATTCGTTTTGTTTGGAATCGAGGCCCATGTCT
GCGTGCAGCAGACGGCCTTGGACCTGCTTGAACAGGGCTATGCCGTTCAC
GTGCTCGTGGACGGGGTGTCGTCGCAAAGGGCACACGACCGAGCTGTAGC
TTTGAGAAGGATGGAAAATGCAGGGGCTCATCTGACGACGGCGGAGAGTC
TAGTTTTCATGTTGCTTGGAGGCGCATCGCATCCTCAATTCCGCACGATT
GCGGGCTTAATCAAGGAGCATGCGGCGGGGACGCCGAGCCCGTTTGAGGA
GCTAGTGAAAACCAACGCAGCGCTTTAAATGGCCACGGCCTCCCTCGTCC
GCGCAGTGGGCAAGCTGCAGCCGGTAGGCACGACATTCTTGCTGTGTGAC
ATCCAGGAGCGCTTTCGGGACGTAATTTGGCATTTTCCTCAGGTCATCCG
CACAGCCAAGTTGATGACCGCGGTGGGGAAGCATTTGCAGATCCCCACCT
TGGCCACGGAGCAGTACCCCAAAGCATTCGGTGCCACGGTGGCTGAACTG
GACGTGGCCAACGTTGAGTACCCTATCCCGACCTTCGAGAAGAAGCTCTT
CAGCATGATCACCGAGGACGTCAAGGCCAAGATAGCGGAGACGCCGGAAC
GGAAAACATTCGTTTTGTTTGGAATCGAGGCCCATGTCTGCGTGCAGCAG
ACGGCCTTGGACCTGCTTGAACAGGGCTATGCCGTTCACGTGCTCGTGGA
CGGGGTGTCGTCGCAAAGGGCACACGACCGAGCTGTAGCTTTGAGAAGGA
TGGAAAATGCAGGGGCTCATCTGACGACGGCGGAGAGTCTAGTTTTCATG
TTGCTTGGAGGCGCATCGCATCCTCAATTCCGCACGATTGCGGGCTTAAT
CAAGGAGCATGCGGCGGGGACGCCGAGCCCGTTTGAGGAGCTAGTGAAAA
CCAACGCAGCGCTTTAA
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Synonyms
Publications