jgi.p|Nanoce1779_2|578306, mRNA_1885 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578306
Unique NamemRNA_1885
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1530
Alignment locationscaffold_4:266983..268512 -

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Properties
Property NameValue
TranscriptId578392
TrackFilteredModels2
ProteinId578306
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:266983..268512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578306gene_1885Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578306mRNA_1885-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1885CDS_1885Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1885 ID=mRNA_1885|Name=jgi.p|Nanoce1779_2|578306|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp
CAGCCAAGCCGCACGTCAACGTGTCCAAACCCTCAAAATGAGGCCTGCTG
CTGCATGCGCTCCTCTCCTAGCCGTACGTCGACCTATTGCTGCGCAAAGC
AGCCTGCCTCTTGCCTCGGCCTCAGCCTGCTGCTGTACAACGACTAGCAC
CACAACCACACCCCATCCCCCTGACCAACCCCCCCTGGCCCTTCCCAAGA
AAAAGGAGAAGAAACGCAAGGTCAAATTCGACCCCATGACCCTGCCTCCT
TCCGCTGAGATCTTTCCGTCCTACGAGCGCAAGGACTTCTTCCGCTTTGA
GCTGCTGCATCAATCCAAGAAAGAAGGGTCCCGGGCCCGAGTAGGGAGAC
TCCATACCCCTCACGGCATCGTCAATACGCCTGGCTTCGTCGCCGTCGCC
ACCAACGGCGCGCTCAAAGCTGTCGATCACGACTGGGGTAATGAGGCAGG
ACAAGAGCTCACTTTCTGCAACACTTACCACCTCCTCCTCCAGCCGGGGC
CCGATGTAATCAAGGCCTGTGGTGGCCTCCACAAATTTATCAACCGTAAT
CGTCCCATCATCACTGACAGCGGCGGCTTTCAAGTCTTCTCCCTCGCCCA
TGGTTCAGTTTTTGACGAGCTTAACATGAAATCTCGGGGCAATAAACACA
AGTCTGAGGCCTCGTCCGTCCTCAAAATTACTGAGGAGGGCTGCCTCTTC
CGCTCCTACCGCGACGGCCGGAAAGTCCTCCTCACACCGGAATCATCCGT
TCAAGCGCAAAAAGCCTACGGATCTGACATCATTATCCCTCTCGACGAAC
TACACCCCTATCATATTGACCCCGATGCCTTGCTCCGGTGCGTCTTACGC
TCGCACAGGTGGGAAGCGCGTTCCCTAAACGAACACCTGAAAGACGTGAA
ACAACAGGCCATGTATGCCGTCATTCATGGAGGGGTTGACCCTGCTTTGC
GAAAAGCCAGCTGTGAGTATCTCACTTCGTTGCCATTTGATGGTTTTGCG
GTGGGGGGAGCGTTGGGGAAGGACAGGGAGGAGCTGGTTGAAGTTTTGAA
GGTGACGATGCCGCACCTGCCCGTGGAGAAGCCCAATCATTTGCTAGGCA
TTGCAGATGAGCCGTCGATCTGGGCGGGGTCAGCGTTGGGGGTGGACACA
TTTGATTCGTGTTTCCCCACGCGGATCGCGAGGCATGGTACCCTGTTGAC
GAAGGAGGGACCTGTGTACATTCGAAAGCAGGTGCACAAGGAGGACTTGC
GGCCGTTGGAGGAGGGATGCGAATGCTTTACCTGCCGGAGGCACAGCCGA
GCATACCTGCATCATTTGTACCGGGCATGCGAGCCGTTGAGTGCCACATT
GTTGACGATTCATAATATGCAGTACATGAATGGGCTGATGGCGCGAATAC
GGGGAAAGATAATGAACAATGAGCTATAGGGACATGAACATGGAATTTGG
ATGCACAAATTCAAAAAGTAACGGCTGATGATTCGGATGTCCAATCTCGT
GAGTCTTCAATAAATAAGTACATCGAATTG
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protein sequence of jgi.p|Nanoce1779_2|578306

>mRNA_1885-protein ID=mRNA_1885-protein|Name=jgi.p|Nanoce1779_2|578306|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MRPAAACAPLLAVRRPIAAQSSLPLASASACCCTTTSTTTTPHPPDQPPL
ALPKKKEKKRKVKFDPMTLPPSAEIFPSYERKDFFRFELLHQSKKEGSRA
RVGRLHTPHGIVNTPGFVAVATNGALKAVDHDWGNEAGQELTFCNTYHLL
LQPGPDVIKACGGLHKFINRNRPIITDSGGFQVFSLAHGSVFDELNMKSR
GNKHKSEASSVLKITEEGCLFRSYRDGRKVLLTPESSVQAQKAYGSDIII
PLDELHPYHIDPDALLRCVLRSHRWEARSLNEHLKDVKQQAMYAVIHGGV
DPALRKASCEYLTSLPFDGFAVGGALGKDREELVEVLKVTMPHLPVEKPN
HLLGIADEPSIWAGSALGVDTFDSCFPTRIARHGTLLTKEGPVYIRKQVH
KEDLRPLEEGCECFTCRRHSRAYLHHLYRACEPLSATLLTIHNMQYMNGL
MARIRGKIMNNEL*
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mRNA from alignment at scaffold_4:266983..268512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1885 ID=mRNA_1885|Name=jgi.p|Nanoce1779_2|578306|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp|location=Sequence derived from alignment at scaffold_4:266983..268512- (Nannochloropsis oceanica)
CAGCCAAGCCGCACGTCAACGTGTCCAAACCCTCAAAATGAGGCCTGCTG
CTGCATGCGCTCCTCTCCTAGCCGTACGTCGACCTATTGCTGCGCAAAGC
AGCCTGCCTCTTGCCTCGGCCTCAGCCTGCTGCTGTACAACGACTAGCAC
CACAACCACACCCCATCCCCCTGACCAACCCCCCCTGGCCCTTCCCAAGA
AAAAGGAGAAGAAACGCAAGGTCAAATTCGACCCCATGACCCTGCCTCCT
TCCGCTGAGATCTTTCCGTCCTACGAGCGCAAGGACTTCTTCCGCTTTGA
GCTGCTGCATCAATCCAAGAAAGAAGGGTCCCGGGCCCGAGTAGGGAGAC
TCCATACCCCTCACGGCATCGTCAATACGCCTGGCTTCGTCGCCGTCGCC
ACCAACGGCGCGCTCAAAGCTGTCGATCACGACTGGGGTAATGAGGCAGG
ACAAGAGCTCACTTTCTGCAACACTTACCACCTCCTCCTCCAGCCGGGGC
CCGATGTAATCAAGGCCTGTGGTGGCCTCCACAAATTTATCAACCGTAAT
CGTCCCATCATCACTGACAGCGGCGGCTTTCAAGTCTTCTCCCTCGCCCA
TGGTTCAGTTTTTGACGAGCTTAACATGAAATCTCGGGGCAATAAACACA
AGTCTGAGGCCTCGTCCGTCCTCAAAATTACTGAGGAGGGCTGCCTCTTC
CGCTCCTACCGCGACGGCCGGAAAGTCCTCCTCACACCGGAATCATCCGT
TCAAGCGCAAAAAGCCTACGGATCTGACATCATTATCCCTCTCGACGAAC
TACACCCCTATCATATTGACCCCGATGCCTTGCTCCGGTGCGTCTTACGC
TCGCACAGGTGGGAAGCGCGTTCCCTAAACGAACACCTGAAAGACGTGAA
ACAACAGGCCATGTATGCCGTCATTCATGGAGGGGTTGACCCTGCTTTGC
GAAAAGCCAGCTGTGAGTATCTCACTTCGTTGCCATTTGATGGTTTTGCG
GTGGGGGGAGCGTTGGGGAAGGACAGGGAGGAGCTGGTTGAAGTTTTGAA
GGTGACGATGCCGCACCTGCCCGTGGAGAAGCCCAATCATTTGCTAGGCA
TTGCAGATGAGCCGTCGATCTGGGCGGGGTCAGCGTTGGGGGTGGACACA
TTTGATTCGTGTTTCCCCACGCGGATCGCGAGGCATGGTACCCTGTTGAC
GAAGGAGGGACCTGTGTACATTCGAAAGCAGGTGCACAAGGAGGACTTGC
GGCCGTTGGAGGAGGGATGCGAATGCTTTACCTGCCGGAGGCACAGCCGA
GCATACCTGCATCATTTGTACCGGGCATGCGAGCCGTTGAGTGCCACATT
GTTGACGATTCATAATATGCAGTACATGAATGGGCTGATGGCGCGAATAC
GGGGAAAGATAATGAACAATGAGCTATAGGGACATGAACATGGAATTTGG
ATGCACAAATTCAAAAAGTAACGGCTGATGATTCGGATGTCCAATCTCGT
GAGTCTTCAATAAATAAGTACATCGAATTG
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Coding sequence (CDS) from alignment at scaffold_4:266983..268512-

>mRNA_1885 ID=mRNA_1885|Name=jgi.p|Nanoce1779_2|578306|organism=Nannochloropsis oceanica|type=CDS|length=1392bp|location=Sequence derived from alignment at scaffold_4:266983..268512- (Nannochloropsis oceanica)
ATGAGGCCTGCTGCTGCATGCGCTCCTCTCCTAGCCGTACGTCGACCTAT
TGCTGCGCAAAGCAGCCTGCCTCTTGCCTCGGCCTCAGCCTGCTGCTGTA
CAACGACTAGCACCACAACCACACCCCATCCCCCTGACCAACCCCCCCTG
GCCCTTCCCAAGAAAAAGGAGAAGAAACGCAAGGTCAAATTCGACCCCAT
GACCCTGCCTCCTTCCGCTGAGATCTTTCCGTCCTACGAGCGCAAGGACT
TCTTCCGCTTTGAGCTGCTGCATCAATCCAAGAAAGAAGGGTCCCGGGCC
CGAGTAGGGAGACTCCATACCCCTCACGGCATCGTCAATACGCCTGGCTT
CGTCGCCGTCGCCACCAACGGCGCGCTCAAAGCTGTCGATCACGACTGGG
GTAATGAGGCAGGACAAGAGCTCACTTTCTGCAACACTTACCACCTCCTC
CTCCAGCCGGGGCCCGATGTAATCAAGGCCTGTGGTGGCCTCCACAAATT
TATCAACCGTAATCGTCCCATCATCACTGACAGCGGCGGCTTTCAAGTCT
TCTCCCTCGCCCATGGTTCAGTTTTTGACGAGCTTAACATGAAATCTCGG
GGCAATAAACACAAGTCTGAGGCCTCGTCCGTCCTCAAAATTACTGAGGA
GGGCTGCCTCTTCCGCTCCTACCGCGACGGCCGGAAAGTCCTCCTCACAC
CGGAATCATCCGTTCAAGCGCAAAAAGCCTACGGATCTGACATCATTATC
CCTCTCGACGAACTACACCCCTATCATATTGACCCCGATGCCTTGCTCCG
GTGCGTCTTACGCTCGCACAGGTGGGAAGCGCGTTCCCTAAACGAACACC
TGAAAGACGTGAAACAACAGGCCATGTATGCCGTCATTCATGGAGGGGTT
GACCCTGCTTTGCGAAAAGCCAGCTGTGAGTATCTCACTTCGTTGCCATT
TGATGGTTTTGCGGTGGGGGGAGCGTTGGGGAAGGACAGGGAGGAGCTGG
TTGAAGTTTTGAAGGTGACGATGCCGCACCTGCCCGTGGAGAAGCCCAAT
CATTTGCTAGGCATTGCAGATGAGCCGTCGATCTGGGCGGGGTCAGCGTT
GGGGGTGGACACATTTGATTCGTGTTTCCCCACGCGGATCGCGAGGCATG
GTACCCTGTTGACGAAGGAGGGACCTGTGTACATTCGAAAGCAGGTGCAC
AAGGAGGACTTGCGGCCGTTGGAGGAGGGATGCGAATGCTTTACCTGCCG
GAGGCACAGCCGAGCATACCTGCATCATTTGTACCGGGCATGCGAGCCGT
TGAGTGCCACATTGTTGACGATTCATAATATGCAGTACATGAATGGGCTG
ATGGCGCGAATACGGGGAAAGATAATGAACAATGAGCTATAG
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Synonyms
Publications