Properties
| Property Name | Value |
|---|
| TranscriptId | 537972 |
| Track | FilteredModels2 |
| ProteinId | 537886 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:257564..260289 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1882 ID=mRNA_1882|Name=jgi.p|Nanoce1779_2|537886|organism=Nannochloropsis oceanica|type=mRNA|length=2084bp
GAAGCAATACCGAACCAAAGAGAAGCTCATCCGCGTTTCAAAATTGCCCT
GCAATGCTGATTGACAATCACCCACTCCCATAACTCGTCGGCATCACCGC
ACAGAGCGAAACATCAGCGGGGAAAATTGGTTTCGCCATTGCCTTTCTCC
AGCGCCGTCCCAACATCGCTCCCGCCTTCAACCCACTACAACGCCCATCA
GAACCTCAATTTCAACCTGCACCTCCCCTTGTATCAAAGCCATGACCGAC
GACTCGTCGGACCAACAACAATCCAGGGCCCCCTATCCTCCGCCACGTCC
TCCCCTTCCTCCTGCTCCTGCCAAAGTAAGCGGAAGTGGCGGCGGGGTCA
AGGGCAGTAGCCCTTTCTACAGCATCAGTGACAACAGTACTGGGGGCGGC
GGCAGCACCAGCAACACTAAAGGTCCCTCCCCTGTCCCTGGCAAAAGCGG
CAACGAATCCCGCACCCCTTCTCGCGCGGAACTATACAACAAGAAAACCA
ATCAAAACGTGAGTGAAAGCATGGAGGAAGTCACGGGCATGCGAAGACGC
CGTAACCAGGACGTGCCCTGCAACCGCGAACCATCGCCCGACCATCCATC
CTCTTCCTCTATGAGCCGTCAAAGCGAAGGTGGGGAAGGGTCAGGAAGGA
GCGCCACTTCCACACCCGGTGGAGGTAGTGCAGTTTTGAGTGCCGTGGCC
CGTGGGATGCTGGGCGTGAGTAAGTGGACGTTGGGATCTGTGGCGAACCA
GCTGGGCGGGCCGTTCGGATGGGGGGAGTTCATGTTTGCATGGGTGAGTG
ATATTACCCCTCCGAGACTTAAGCGGTTGGCAACGATTTTTTGGGATGCC
GGTGCGCATATTACCAAGTTGGCCTATACGGAGGGTGGGAATGAGTTGGG
GTTTGCGGCACGGAACGTGATTGATGGGCTAGTGGAGACGGTGGCGGCGC
CGAAGGGAAGAGCGTTGGTGTTGGAAAGTGGGATGACCTTTGTAAAGTTG
GCAGAGGCGGTGGATACGCCGGAGATGCACGCGGCGATTACTCAGGGGTT
CAAGCTGGGGACGAGAGGGTTGGAAGTGTTAGCTACCGAGCAAGCCAAAG
ACCTCATGTCCAACATGTCGGACTTCCTCTCCCGGCTTGCCCGTCTTGCC
AACGCCCCCGAAACAACCCTAGCCGTTGCGGAATTCGTCACGGTGGTATG
CCATGCACTAGCGCAGGAAAACGCGGCGTACAGTAGGGAGAGGGTGGCGC
AGATGTCGCCGTTTGAGCCGGGGGGGATCGGGGGGGTAGGGATGGGGATG
GAGGGGGAGGAGGAGGAGGACTTGAAGAAAGGAGGGAGGAAGAGGGGGAT
GCGGATTGTGAAAGACGAGGATGGGGAGCGGATGGAGTGGGACGAGGACC
TGGTGTTGGGGCGCAAGCGGGGAGGGGAGGACGAGGGGGAGGGAGGCGTG
GACGTGAGTGATACAACAGCCTCGACCAGGACCCCGTTAGGATGGAGGAA
AGGTTCTGGGGGAGGGAGAGAGGGAGGAAGGGAGTGAGGGAGGGAGGGAA
GAAGGAATTTTACATGTGTATGATGTCAGTGAAGGCCGTCATGATTTAGG
GTAGCTTGGGATGCGGTGAAGGAGTGGGTTGGAGGGAAAGATAAGAGTGG
GAAGATGGAAGGTGTTGCAGGGAAGATGGACGGGAAATGCGAGTAGGACG
AGAAGCAGGGACATAGCTATCTACACTTAAATGCACGAGGAGGCACAGAA
TATCGAGCAAAGGGAGCAGCAGCAAGCAAGGAAGCAGAGGACAAAGGAGG
ATAAGCAATCAATTTTGACAAGCACCGGCCCGGGGTGTAATTTAGATAGT
GCGAAAGAAAACACACATGCACACATGCACAATCACACATTTTTAAGATG
AAAACCCATGAAAACGGTCATATATATTTACCTTGGCAGTCTATTTCAAA
ACGGAGGGTAGAGGACGGAGGAATGCAGAACGGGAGACACGACCCCGACA
GTAACAGTAGAAAGACCAAATTACGAAAAGAATAAGGCATTTAAAAAAAA
AGAAGAAGATAATCTAGCCACTTGAGCTTGTCTT back to topprotein sequence of jgi.p|Nanoce1779_2|537886 >mRNA_1882-protein ID=mRNA_1882-protein|Name=jgi.p|Nanoce1779_2|537886|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MTDDSSDQQQSRAPYPPPRPPLPPAPAKVSGSGGGVKGSSPFYSISDNST
GGGGSTSNTKGPSPVPGKSGNESRTPSRAELYNKKTNQNVSESMEEVTGM
RRRRNQDVPCNREPSPDHPSSSSMSRQSEGGEGSGRSATSTPGGGSAVLS
AVARGMLGVSKWTLGSVANQLGGPFGWGEFMFAWVSDITPPRLKRLATIF
WDAGAHITKLAYTEGGNELGFAARNVIDGLVETVAAPKGRALVLESGMTF
VKLAEAVDTPEMHAAITQGFKLGTRGLEVLATEQAKDLMSNMSDFLSRLA
RLANAPETTLAVAEFVTVVCHALAQENAAYSRERVAQMSPFEPGGIGGVG
MGMEGEEEEDLKKGGRKRGMRIVKDEDGERMEWDEDLVLGRKRGGEDEGE
GGVDVSDTTASTRTPLGWRKGSGGGREGGRE* back to topmRNA from alignment at scaffold_4:257564..260289- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1882 ID=mRNA_1882|Name=jgi.p|Nanoce1779_2|537886|organism=Nannochloropsis oceanica|type=mRNA|length=2726bp|location=Sequence derived from alignment at scaffold_4:257564..260289- (Nannochloropsis oceanica)
GAAGCAATACCGAACCAAAGAGAAGCTCATCCGCGTTTCAAAATTGCCCT
GCAATGCTGATTGACAATCACCCACTCCCATAACTCGTCGGCATCACCGC
ACAGAGCGAAACATCAGCGGGGAAAATTGGTTTCGCCATTGCCTTTCTCC
AGCGCCGTCCCAACATCGCTCCCGCCTTCAACCCACTACAACGCCCATCA
GAACCTCAATTTCAACCTGCACCTCCCCTTGTATCAAAGCCATGACCGAC
GACTCGTCGGACCAACAACAATCCAGGGCCCCCTATCCTCCGCCACGTCC
TCCCCTTCCTCCTGCTCCTGCCAAAGTAAGCGGAAGTGGCGGCGGGGTCA
AGGGCAGTAGCCCTTTCTACAGCATCAGTGACAACAGTACTGGGGGCGGC
GGCAGCACCAGCAACACTAAAGGTCCCTCCCCTGTCCCTGGCAAAAGCGG
CAACGAATCCCGCACCCCTTCTCGCGCGGAACTATACAACAAGAAAACCA
ATCAAAACGTGAGTGAAAGCATGGAGGAAGTCACGGGCATGCGAAGACGC
CGTAACCAGGACGTGCCCTGCAACCGCGAACCATCGCCCGACCATCCATC
CTCTTCCTCTATGAGCCGTCAAAGCGAAGGTGGGGAAGGGTCAGGAAGGA
GCGCCACTTCCACACCCGGTGGAGGTAGTGCAGTTTTGAGTGCCGTGGCC
CGTGGGATGCTGGGCGTGAGTAAGTGGACGTTGGGATCTGTGGCGAACCA
GCTGGGCGGGCCGTTCGGATGGGGGGAGTTCATGTTTGCATGGGTGAGTG
ATATTACCCCTCCGAGACTTAAGCGGTTGGCAACGATTTTTTGGGATGCC
GGTGCGCATATTACCAAGTTGGCCTATACGGAGGGTGGGAATGAGTTGGG
GTTTGCGGCACGGAACGTGATTGATGGGCTAGTGGAGACGGTGGCGGCGC
CGAAGGGAAGAGCGTTGGTGTTGGAAAGTGGGATGACCTTTGTAAAGTTG
GCAGAGGCGGTGGATACGCCGGAGATGCACGCGGCGATTACTCAGGGGTT
CAAGCTGGGGACGAGAGGGTTGGAAGTGTTAGCTACCGGTGGGTGTGGGT
GTGGGTGTGGGTGTTTGTATGAGCATGTGCCCGCCTCCCTGTAAGCTGGT
GGCTATGTATGGATGAATATCTTCATCTCATGTTGTAAGTTGTCTGTGTG
TATGTGTGGGTTTGCTTGCCTTCCCTTGTACATATAATAATGTCAGCCGA
AGTGGTCACTCATTTCCTCCCTCCCTCTCTCCCCCCCTCCTTCCTTCCCC
CCCCCCCCCCCTTCAGAGCAAGCCAAAGACCTCATGTCCAACATGTCGGA
CTTCCTCTCCCGGCTTGCCCGTCTTGCCAACGCCCCCGAAACAACCCTAG
CCGTTGCGGAATTCGTCACGGTGGTATGCCATGCACTAGCGCAGGAAAAC
GCGGCGTACAGTAGGGAGAGGGTGGCGCAGATGTCGCCGTTTGAGCCGGG
GGGGATCGGGGGGGTAGGGATGGGGATGGAGGGGGAGGAGGAGGAGGACT
TGAAGAAAGGAGGGAGGAAGAGGGGGATGCGGATTGTGAAAGACGAGGAT
GGGGAGCGGATGGAGTGGGACGAGGACCTGGTGTTGGGGCGCAAGCGGGG
AGGGGAGGACGAGGGGGAGGGAGGCGTGGACGTGAGTGATACAACAGCCT
CGACCAGGACCCCGTTGTCGAGGGTGCCGGGGGAGGAGGAGAAGGATGAC
ATGTTGATGGAGGGGGAGGAGAGTGAGTTGTTGCCGATCCAGTCCGGGGA
GATGGAGGATTTGCTAGGGGCGAGGGCGGGAGGGAGGGGAGGAGGAGGAG
GAGGGAGCTCGACCGCGGACGGGGGAAATTTTGACAAAGTGACGGCTCTC
AAAGAAATGATTGCGGCCATATTGGAGGAGAAGCGACAGGCGGCGGAGGC
CGGGGGGATGGGAGGGAGGGGGGGAGGGATGGCAGGGACGTACAAGACGG
AGCATCAACGGGCGGCGCATTGCGTCATGTCGTTTTTGTTTTTCATAACG
TATACGGTGTTTGCATTTATTGGCTTGCGGGCCACGCTGGTAACCTTGAA
GACGGCGTTTGGGGCGGATGGGAGGTAAAGAGGATGGAGGAAAGGTTCTG
GGGGAGGGAGAGAGGGAGGAAGGGAGTGAGGGAGGGAGGGAAGAAGGAAT
TTTACATGTGTATGATGTCAGTGAAGGCCGTCATGATTTAGGGTAGCTTG
GGATGCGGTGAAGGAGTGGGTTGGAGGGAAAGATAAGAGTGGGAAGATGG
AAGGTGTTGCAGGGAAGATGGACGGGAAATGCGAGTAGGACGAGAAGCAG
GGACATAGCTATCTACACTTAAATGCACGAGGAGGCACAGAATATCGAGC
AAAGGGAGCAGCAGCAAGCAAGGAAGCAGAGGACAAAGGAGGATAAGCAA
TCAATTTTGACAAGCACCGGCCCGGGGTGTAATTTAGATAGTGCGAAAGA
AAACACACATGCACACATGCACAATCACACATTTTTAAGATGAAAACCCA
TGAAAACGGTCATATATATTTACCTTGGCAGTCTATTTCAAAACGGAGGG
TAGAGGACGGAGGAATGCAGAACGGGAGACACGACCCCGACAGTAACAGT
AGAAAGACCAAATTACGAAAAGAATAAGGCATTTAAAAAAAAAGAAGAAG
ATAATCTAGCCACTTGAGCTTGTCTT back to topCoding sequence (CDS) from alignment at scaffold_4:257564..260289- >mRNA_1882 ID=mRNA_1882|Name=jgi.p|Nanoce1779_2|537886|organism=Nannochloropsis oceanica|type=CDS|length=3888bp|location=Sequence derived from alignment at scaffold_4:257564..260289- (Nannochloropsis oceanica)
AGGATGGAGGAAAGGTTCTGGGGGAGGGAGAGAGGGAGGAAGGGAGTGAA
GCAAGCCAAAGACCTCATGTCCAACATGTCGGACTTCCTCTCCCGGCTTG
CCCGTCTTGCCAACGCCCCCGAAACAACCCTAGCCGTTGCGGAATTCGTC
ACGGTGGTATGCCATGCACTAGCGCAGGAAAACGCGGCGTACAGTAGGGA
GAGGGTGGCGCAGATGTCGCCGTTTGAGCCGGGGGGGATCGGGGGGGTAG
GGATGGGGATGGAGGGGGAGGAGGAGGAGGACTTGAAGAAAGGAGGGAGG
AAGAGGGGGATGCGGATTGTGAAAGACGAGGATGGGGAGCGGATGGAGTG
GGACGAGGACCTGGTGTTGGGGCGCAAGCGGGGAGGGGAGGACGAGGGGG
AGGGAGGCGTGGACGTGAGTGATACAACAGCCTCGACCAGGACCCCGTTA
TGACCGACGACTCGTCGGACCAACAACAATCCAGGGCCCCCTATCCTCCG
CCACGTCCTCCCCTTCCTCCTGCTCCTGCCAAAGTAAGCGGAAGTGGCGG
CGGGGTCAAGGGCAGTAGCCCTTTCTACAGCATCAGTGACAACAGTACTG
GGGGCGGCGGCAGCACCAGCAACACTAAAGGTCCCTCCCCTGTCCCTGGC
AAAAGCGGCAACGAATCCCGCACCCCTTCTCGCGCGGAACTATACAACAA
GAAAACCAATCAAAACGTGAGTGAAAGCATGGAGGAAGTCACGGGCATGC
GAAGACGCCGTAACCAGGACGTGCCCTGCAACCGCGAACCATCGCCCGAC
CATCCATCCTCTTCCTCTATGAGCCGTCAAAGCGAAGGTGGGGAAGGGTC
AGGAAGGAGCGCCACTTCCACACCCGGTGGAGGTAGTGCAGTTTTGAGTG
CCGTGGCCCGTGGGATGCTGGGCGTGAGTAAGTGGACGTTGGGATCTGTG
GCGAACCAGCTGGGCGGGCCGTTCGGATGGGGGGAGTTCATGTTTGCATG
GGTGAGTGATATTACCCCTCCGAGACTTAAGCGGTTGGCAACGATTTTTT
GGGATGCCGGTGCGCATATTACCAAGTTGGCCTATACGGAGGGTGGGAAT
GAGTTGGGGTTTGCGGCACGGAACGTGATTGATGGGCTAGTGGAGACGGT
GGCGGCGCCGAAGGGAAGAGCGTTGGTGTTGGAAAGTGGGATGACCTTTG
TAAAGTTGGCAGAGGCGGTGGATACGCCGGAGATGCACGCGGCGATTACT
CAGGGGTTCAAGCTGGGGACGAGAGGGTTGGAAGTGTTAGCTACCGAGGA
TGGAGGAAAGGTTCTGGGGGAGGGAGAGAGGGAGGAAGGGAGTGAAGCAA
GCCAAAGACCTCATGTCCAACATGTCGGACTTCCTCTCCCGGCTTGCCCG
TCTTGCCAACGCCCCCGAAACAACCCTAGCCGTTGCGGAATTCGTCACGG
TGGTATGCCATGCACTAGCGCAGGAAAACGCGGCGTACAGTAGGGAGAGG
GTGGCGCAGATGTCGCCGTTTGAGCCGGGGGGGATCGGGGGGGTAGGGAT
GGGGATGGAGGGGGAGGAGGAGGAGGACTTGAAGAAAGGAGGGAGGAAGA
GGGGGATGCGGATTGTGAAAGACGAGGATGGGGAGCGGATGGAGTGGGAC
GAGGACCTGGTGTTGGGGCGCAAGCGGGGAGGGGAGGACGAGGGGGAGGG
AGGCGTGGACGTGAGTGATACAACAGCCTCGACCAGGACCCCGTTATGAC
CGACGACTCGTCGGACCAACAACAATCCAGGGCCCCCTATCCTCCGCCAC
GTCCTCCCCTTCCTCCTGCTCCTGCCAAAGTAAGCGGAAGTGGCGGCGGG
GTCAAGGGCAGTAGCCCTTTCTACAGCATCAGTGACAACAGTACTGGGGG
CGGCGGCAGCACCAGCAACACTAAAGGTCCCTCCCCTGTCCCTGGCAAAA
GCGGCAACGAATCCCGCACCCCTTCTCGCGCGGAACTATACAACAAGAAA
ACCAATCAAAACGTGAGTGAAAGCATGGAGGAAGTCACGGGCATGCGAAG
ACGCCGTAACCAGGACGTGCCCTGCAACCGCGAACCATCGCCCGACCATC
CATCCTCTTCCTCTATGAGCCGTCAAAGCGAAGGTGGGGAAGGGTCAGGA
AGGAGCGCCACTTCCACACCCGGTGGAGGTAGTGCAGTTTTGAGTGCCGT
GGCCCGTGGGATGCTGGGCGTGAGTAAGTGGACGTTGGGATCTGTGGCGA
ACCAGCTGGGCGGGCCGTTCGGATGGGGGGAGTTCATGTTTGCATGGGTG
AGTGATATTACCCCTCCGAGACTTAAGCGGTTGGCAACGATTTTTTGGGA
TGCCGGTGCGCATATTACCAAGTTGGCCTATACGGAGGGTGGGAATGAGT
TGGGGTTTGCGGCACGGAACGTGATTGATGGGCTAGTGGAGACGGTGGCG
GCGCCGAAGGGAAGAGCGTTGGTGTTGGAAAGTGGGATGACCTTTGTAAA
GTTGGCAGAGGCGGTGGATACGCCGGAGATGCACGCGGCGATTACTCAGG
GGTTCAAGCTGGGGACGAGAGGGTTGGAAGTGTTAGCTACCGAGGATGGA
GGAAAGGTTCTGGGGGAGGGAGAGAGGGAGGAAGGGAGTGAAGCAAGCCA
AAGACCTCATGTCCAACATGTCGGACTTCCTCTCCCGGCTTGCCCGTCTT
GCCAACGCCCCCGAAACAACCCTAGCCGTTGCGGAATTCGTCACGGTGGT
ATGCCATGCACTAGCGCAGGAAAACGCGGCGTACAGTAGGGAGAGGGTGG
CGCAGATGTCGCCGTTTGAGCCGGGGGGGATCGGGGGGGTAGGGATGGGG
ATGGAGGGGGAGGAGGAGGAGGACTTGAAGAAAGGAGGGAGGAAGAGGGG
GATGCGGATTGTGAAAGACGAGGATGGGGAGCGGATGGAGTGGGACGAGG
ACCTGGTGTTGGGGCGCAAGCGGGGAGGGGAGGACGAGGGGGAGGGAGGC
GTGGACGTGAGTGATACAACAGCCTCGACCAGGACCCCGTTATGACCGAC
GACTCGTCGGACCAACAACAATCCAGGGCCCCCTATCCTCCGCCACGTCC
TCCCCTTCCTCCTGCTCCTGCCAAAGTAAGCGGAAGTGGCGGCGGGGTCA
AGGGCAGTAGCCCTTTCTACAGCATCAGTGACAACAGTACTGGGGGCGGC
GGCAGCACCAGCAACACTAAAGGTCCCTCCCCTGTCCCTGGCAAAAGCGG
CAACGAATCCCGCACCCCTTCTCGCGCGGAACTATACAACAAGAAAACCA
ATCAAAACGTGAGTGAAAGCATGGAGGAAGTCACGGGCATGCGAAGACGC
CGTAACCAGGACGTGCCCTGCAACCGCGAACCATCGCCCGACCATCCATC
CTCTTCCTCTATGAGCCGTCAAAGCGAAGGTGGGGAAGGGTCAGGAAGGA
GCGCCACTTCCACACCCGGTGGAGGTAGTGCAGTTTTGAGTGCCGTGGCC
CGTGGGATGCTGGGCGTGAGTAAGTGGACGTTGGGATCTGTGGCGAACCA
GCTGGGCGGGCCGTTCGGATGGGGGGAGTTCATGTTTGCATGGGTGAGTG
ATATTACCCCTCCGAGACTTAAGCGGTTGGCAACGATTTTTTGGGATGCC
GGTGCGCATATTACCAAGTTGGCCTATACGGAGGGTGGGAATGAGTTGGG
GTTTGCGGCACGGAACGTGATTGATGGGCTAGTGGAGACGGTGGCGGCGC
CGAAGGGAAGAGCGTTGGTGTTGGAAAGTGGGATGACCTTTGTAAAGTTG
GCAGAGGCGGTGGATACGCCGGAGATGCACGCGGCGATTACTCAGGGGTT
CAAGCTGGGGACGAGAGGGTTGGAAGTGTTAGCTACCG back to top
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