jgi.p|Nanoce1779_2|578285, mRNA_1880 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578285
Unique NamemRNA_1880
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length321
Alignment locationscaffold_4:252443..252763 +

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Properties
Property NameValue
TranscriptId578371
TrackFilteredModels2
ProteinId578285
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:252443..252763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578285gene_1880Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578285mRNA_1880-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1880CDS_1880Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1880 ID=mRNA_1880|Name=jgi.p|Nanoce1779_2|578285|organism=Nannochloropsis oceanica|type=mRNA|length=321bp
CTGCTGTTGCTCCTGCTGCTGTTCCTGCTGCTCCTGCTGCTGCTGCATAA
CTTTTTGAACTTGCCGTTGTCTCAACCGTTCCTGCCCCCTTGCATCCACC
CCTCCCTCCTTCCCTCTCTTCTCCTCTCCCGCCAGGCCCAACCCCCTCTC
TACCCTCCTCCTTTTGGCTTGAAGCCCCTCCTGATATTTCTTCCATTCCT
GCGCCTGCTGCTGTCGCTGTTGCCGCCGGTAGAGTTCCCAAGCCCGCGCT
CTCTCCATCTCCTCCTTCTCGGCAGCCAGCCTCTCTGCATCCTCCTGGGC
TCGCGCCTGTTTCTCCCGTAG
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protein sequence of jgi.p|Nanoce1779_2|578285

>mRNA_1880-protein ID=mRNA_1880-protein|Name=jgi.p|Nanoce1779_2|578285|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
LLLLLLLFLLLLLLLHNFLNLPLSQPFLPPCIHPSLLPSLLLSRQAQPPL
YPPPFGLKPLLIFLPFLRLLLSLLPPVEFPSPRSLHLLLLGSQPLCILLG
SRLFLP*
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mRNA from alignment at scaffold_4:252443..252763+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1880 ID=mRNA_1880|Name=jgi.p|Nanoce1779_2|578285|organism=Nannochloropsis oceanica|type=mRNA|length=321bp|location=Sequence derived from alignment at scaffold_4:252443..252763+ (Nannochloropsis oceanica)
CTGCTGTTGCTCCTGCTGCTGTTCCTGCTGCTCCTGCTGCTGCTGCATAA CTTTTTGAACTTGCCGTTGTCTCAACCGTTCCTGCCCCCTTGCATCCACC CCTCCCTCCTTCCCTCTCTTCTCCTCTCCCGCCAGGCCCAACCCCCTCTC TACCCTCCTCCTTTTGGCTTGAAGCCCCTCCTGATATTTCTTCCATTCCT GCGCCTGCTGCTGTCGCTGTTGCCGCCGGTAGAGTTCCCAAGCCCGCGCT CTCTCCATCTCCTCCTTCTCGGCAGCCAGCCTCTCTGCATCCTCCTGGGC TCGCGCCTGTTTCTCCCGTAG
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Coding sequence (CDS) from alignment at scaffold_4:252443..252763+

>mRNA_1880 ID=mRNA_1880|Name=jgi.p|Nanoce1779_2|578285|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_4:252443..252763+ (Nannochloropsis oceanica)
CTGCTGTTGCTCCTGCTGCTGTTCCTGCTGCTCCTGCTGCTGCTGCATAA
CTTTTTGAACTTGCCGTTGTCTCAACCGTTCCTGCCCCCTTGCATCCACC
CCTCCCTCCTTCCCTCTCTTCTCCTCTCCCGCCAGGCCCAACCCCCTCTC
TACCCTCCTCCTTTTGGCTTGAAGCCCCTCCTGATATTTCTTCCATTCCT
GCGCCTGCTGCTGTCGCTGTTGCCGCCGGTAGAGTTCCCAAGCCCGCGCT
CTCTCCATCTCCTCCTTCTCGGCAGCCAGCCTCTCTGCATCCTCCTGGGC
TCGCGCCTGTTTCTCCCGTAG
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Synonyms
Publications