jgi.p|Nanoce1779_2|576487, mRNA_188 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576487
Unique Name	mRNA_188
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2207
Alignment location	scaffold_3:475527..477733 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576573
Track	FilteredModels2
ProteinId	576487

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:475527..477733 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576487	gene_188	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576487	mRNA_188-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_188	CDS_188	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:475527..477733+
coding sequence from alignment at scaffold_3:475527..477733+

mRNA sequence

>mRNA_188 ID=mRNA_188|Name=jgi.p|Nanoce1779_2|576487|organism=Nannochloropsis oceanica|type=mRNA|length=2207bp
AGGGACAACATGGATAACAGCAGACGGCGTGCATCGATGGATGCGGCCGG
ACTAGCTATCCGCACAGCCGTCACTACGGCAGCCGCGCTATTCCTCTTCG
CCCCTTCGACTACTCTAGCCTTCTTCCTCTCCTCCAAACCCGCAATCTCA
AGGCCCATGACGACGGCAGCATCATTTTCCTCACCGCTATCACCAGCAGG
CGGAATAAAATGTCGTGATAGTTCTTCATCTATATTTGTAGCCTGTCCCA
CCACGACGGCAATCACCGCCCCTCACCCTCCCTCTCTTCTGCTCCTGCAT
GCTACCGCTGCCAAGGAAGCCAACAAGGCCACAATGAGTCCTCGGAGAAG
AAGTGCACTGGAGGCTGAATTCCGACGACTGGCACTGAAGACCCAAGGCT
TATATTTTGTGTCCTTATCTGCCTTTTATACAAGTGGAGAGGTCGCGGAA
TTGTTGAAGGAGAAGCTGCTGGCAAAGACGGAGGTGGATTCGTTTTGGAT
GGGAGAGGTGGGGGATACGGACGAGATGGCGGACCTTGAGGGGTTTCTTG
CAGTCTACGATAGGATTGATGCATTGTTTGAGGATGGTGAGGAGGAAGAA
GAGGTAGAAGAAGAGGAAGAGCAGCAGGTGGTTGACCAAGTCAAGTCGGC
TCCGCCTGTTGGGGCGGTGGTGCAGTCTCTTACCACAGCAGCTGCTTCTG
CTGCTGCTGCTGCGACAGCCGCACCAATTGTGGGAGGGATGTTGGTGGAC
GAATTTATGGCCTCGGCAGACGTGGCTCGATACTTAGAAGAGGACTTGGT
CACCAAAGAGGAGGTCATCGGATTCTGGCGGGCCGAGGCAGGGGTGGAAT
CGAGCACCAGCAGCAGCAGCATTATCAGCACCAGTGGTGGCCCTTTGCTT
CCACGCTTGTCCCGCGAAGCCACTCTGAGGGTATATGCAAAGATCGAGGA
ACTTTTTGAGGACGAGGAGAAGGACTCTCCAGAAATGATCGAAGAAGCAG
CAGCGGAGCGTGCCTCCGTCCCTCCTCCCCCCGCGGCGTCTGCAGAAGAT
GCAGAACTCTGGGCAGAGTATACGGCAGCGATGGGCGGGCCTTTGAATAG
TAAAATGGATTACATGACCTTTTTGAAGACAAACGAGCTCCCTGCATTGA
TGGCGGAAGAGCTCATCTCTCGAGAAGAGGTGAAAGCAATGTGGGACAAT
GTCGCACGAGGCGAGCTCGCTATCAATTTCGAAGGCTTCAAAGCTCTATC
TTCTGACTTGGATGACTTATTCATGGAGGAAGAAGATTGGGATACAGTAG
CAGCAGCAGAGGCAGCACGAGTGGCCCCAGAATCGGCGCCGGCTCGGCAG
ACGGCTGCAGCGATGTTCGAAGCGGCGGCGGCGGCGCAGAGCAAGGCGGA
GGAGCCGGAGGCGATGCAGGTGGTGGGCCCGGCGAAGCCCCAGCTCTTGG
AAGTGCTGGGGTCGATTAAATTTGCCGGGTTGTTGGATGACGATAAGGCG
ACAGATGAATATGTGGCGGCGTTGGTGGAGGCCATGATAGAAGAAGACGC
TAACTTGGCTGTGCAGGACGAGTTGGAGATTGCAGAGTTGCAGAAGGCGA
TGGAGGGGGATTGGGATTTGGCATATAGCACATCGAGGACAATGAGGTAT
AATCGGGGATTGAGCGGGCTGGGCAAGTCATTGCCGCAGGCAGAATTTGT
GGCGTTTCGGCAGTCGATTGCGGTAAATGGATATGCGTTTGAGACAGTGT
ATACGGAGAAGCTGAAGACATTGGGGAGGGAGTTGGACGTGGTGGTGGAG
GGTGCGTGGGAATTGAAAGACGTCGTTTCGATCATGGATGGAGAGCTATG
TTTGATCATGGATGTGTTGCCAGCGACGATCAAGTACGGCTTTATGAATG
AACGAATTGAGACGGGGTGGAAAGGTGTAAGGGTTTTGAATCGGTGTGAG
CTGTTGTATTTGGATCAAGACACCCGCGTGATGAAAGGGCAGTCGTCTGA
TTCCTATTTTGTGTTCCGCCGACGGGCGGATGGTAGTACAACGATTAAAG
CATGGAATAAGGGGTCATAACGAGAGAGTGTACGGGGAGTGAAGAGAGGA
GGAGTGGGAGAGAGAGAAGATGTCCAAGGGGTAACGCTGTGTGTGACTTT
TGTTTTTGATACAGCCTTACTATTTGATCTGTAAAGAAAAATCAGAGCGA
CAGGGAA

protein sequence of jgi.p|Nanoce1779_2|576487

>mRNA_188-protein ID=mRNA_188-protein|Name=jgi.p|Nanoce1779_2|576487|organism=Nannochloropsis oceanica|type=polypeptide|length=687bp
MDNSRRRASMDAAGLAIRTAVTTAAALFLFAPSTTLAFFLSSKPAISRPM
TTAASFSSPLSPAGGIKCRDSSSSIFVACPTTTAITAPHPPSLLLLHATA
AKEANKATMSPRRRSALEAEFRRLALKTQGLYFVSLSAFYTSGEVAELLK
EKLLAKTEVDSFWMGEVGDTDEMADLEGFLAVYDRIDALFEDGEEEEEVE
EEEEQQVVDQVKSAPPVGAVVQSLTTAAASAAAAATAAPIVGGMLVDEFM
ASADVARYLEEDLVTKEEVIGFWRAEAGVESSTSSSSIISTSGGPLLPRL
SREATLRVYAKIEELFEDEEKDSPEMIEEAAAERASVPPPPAASAEDAEL
WAEYTAAMGGPLNSKMDYMTFLKTNELPALMAEELISREEVKAMWDNVAR
GELAINFEGFKALSSDLDDLFMEEEDWDTVAAAEAARVAPESAPARQTAA
AMFEAAAAAQSKAEEPEAMQVVGPAKPQLLEVLGSIKFAGLLDDDKATDE
YVAALVEAMIEEDANLAVQDELEIAELQKAMEGDWDLAYSTSRTMRYNRG
LSGLGKSLPQAEFVAFRQSIAVNGYAFETVYTEKLKTLGRELDVVVEGAW
ELKDVVSIMDGELCLIMDVLPATIKYGFMNERIETGWKGVRVLNRCELLY
LDQDTRVMKGQSSDSYFVFRRRADGSTTIKAWNKGS*

mRNA from alignment at scaffold_3:475527..477733+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_188 ID=mRNA_188|Name=jgi.p|Nanoce1779_2|576487|organism=Nannochloropsis oceanica|type=mRNA|length=2207bp|location=Sequence derived from alignment at scaffold_3:475527..477733+ (Nannochloropsis oceanica)
AGGGACAACATGGATAACAGCAGACGGCGTGCATCGATGGATGCGGCCGG
ACTAGCTATCCGCACAGCCGTCACTACGGCAGCCGCGCTATTCCTCTTCG
CCCCTTCGACTACTCTAGCCTTCTTCCTCTCCTCCAAACCCGCAATCTCA
AGGCCCATGACGACGGCAGCATCATTTTCCTCACCGCTATCACCAGCAGG
CGGAATAAAATGTCGTGATAGTTCTTCATCTATATTTGTAGCCTGTCCCA
CCACGACGGCAATCACCGCCCCTCACCCTCCCTCTCTTCTGCTCCTGCAT
GCTACCGCTGCCAAGGAAGCCAACAAGGCCACAATGAGTCCTCGGAGAAG
AAGTGCACTGGAGGCTGAATTCCGACGACTGGCACTGAAGACCCAAGGCT
TATATTTTGTGTCCTTATCTGCCTTTTATACAAGTGGAGAGGTCGCGGAA
TTGTTGAAGGAGAAGCTGCTGGCAAAGACGGAGGTGGATTCGTTTTGGAT
GGGAGAGGTGGGGGATACGGACGAGATGGCGGACCTTGAGGGGTTTCTTG
CAGTCTACGATAGGATTGATGCATTGTTTGAGGATGGTGAGGAGGAAGAA
GAGGTAGAAGAAGAGGAAGAGCAGCAGGTGGTTGACCAAGTCAAGTCGGC
TCCGCCTGTTGGGGCGGTGGTGCAGTCTCTTACCACAGCAGCTGCTTCTG
CTGCTGCTGCTGCGACAGCCGCACCAATTGTGGGAGGGATGTTGGTGGAC
GAATTTATGGCCTCGGCAGACGTGGCTCGATACTTAGAAGAGGACTTGGT
CACCAAAGAGGAGGTCATCGGATTCTGGCGGGCCGAGGCAGGGGTGGAAT
CGAGCACCAGCAGCAGCAGCATTATCAGCACCAGTGGTGGCCCTTTGCTT
CCACGCTTGTCCCGCGAAGCCACTCTGAGGGTATATGCAAAGATCGAGGA
ACTTTTTGAGGACGAGGAGAAGGACTCTCCAGAAATGATCGAAGAAGCAG
CAGCGGAGCGTGCCTCCGTCCCTCCTCCCCCCGCGGCGTCTGCAGAAGAT
GCAGAACTCTGGGCAGAGTATACGGCAGCGATGGGCGGGCCTTTGAATAG
TAAAATGGATTACATGACCTTTTTGAAGACAAACGAGCTCCCTGCATTGA
TGGCGGAAGAGCTCATCTCTCGAGAAGAGGTGAAAGCAATGTGGGACAAT
GTCGCACGAGGCGAGCTCGCTATCAATTTCGAAGGCTTCAAAGCTCTATC
TTCTGACTTGGATGACTTATTCATGGAGGAAGAAGATTGGGATACAGTAG
CAGCAGCAGAGGCAGCACGAGTGGCCCCAGAATCGGCGCCGGCTCGGCAG
ACGGCTGCAGCGATGTTCGAAGCGGCGGCGGCGGCGCAGAGCAAGGCGGA
GGAGCCGGAGGCGATGCAGGTGGTGGGCCCGGCGAAGCCCCAGCTCTTGG
AAGTGCTGGGGTCGATTAAATTTGCCGGGTTGTTGGATGACGATAAGGCG
ACAGATGAATATGTGGCGGCGTTGGTGGAGGCCATGATAGAAGAAGACGC
TAACTTGGCTGTGCAGGACGAGTTGGAGATTGCAGAGTTGCAGAAGGCGA
TGGAGGGGGATTGGGATTTGGCATATAGCACATCGAGGACAATGAGGTAT
AATCGGGGATTGAGCGGGCTGGGCAAGTCATTGCCGCAGGCAGAATTTGT
GGCGTTTCGGCAGTCGATTGCGGTAAATGGATATGCGTTTGAGACAGTGT
ATACGGAGAAGCTGAAGACATTGGGGAGGGAGTTGGACGTGGTGGTGGAG
GGTGCGTGGGAATTGAAAGACGTCGTTTCGATCATGGATGGAGAGCTATG
TTTGATCATGGATGTGTTGCCAGCGACGATCAAGTACGGCTTTATGAATG
AACGAATTGAGACGGGGTGGAAAGGTGTAAGGGTTTTGAATCGGTGTGAG
CTGTTGTATTTGGATCAAGACACCCGCGTGATGAAAGGGCAGTCGTCTGA
TTCCTATTTTGTGTTCCGCCGACGGGCGGATGGTAGTACAACGATTAAAG
CATGGAATAAGGGGTCATAACGAGAGAGTGTACGGGGAGTGAAGAGAGGA
GGAGTGGGAGAGAGAGAAGATGTCCAAGGGGTAACGCTGTGTGTGACTTT
TGTTTTTGATACAGCCTTACTATTTGATCTGTAAAGAAAAATCAGAGCGA
CAGGGAA

Coding sequence (CDS) from alignment at scaffold_3:475527..477733+

>mRNA_188 ID=mRNA_188|Name=jgi.p|Nanoce1779_2|576487|organism=Nannochloropsis oceanica|type=CDS|length=2061bp|location=Sequence derived from alignment at scaffold_3:475527..477733+ (Nannochloropsis oceanica)
ATGGATAACAGCAGACGGCGTGCATCGATGGATGCGGCCGGACTAGCTAT
CCGCACAGCCGTCACTACGGCAGCCGCGCTATTCCTCTTCGCCCCTTCGA
CTACTCTAGCCTTCTTCCTCTCCTCCAAACCCGCAATCTCAAGGCCCATG
ACGACGGCAGCATCATTTTCCTCACCGCTATCACCAGCAGGCGGAATAAA
ATGTCGTGATAGTTCTTCATCTATATTTGTAGCCTGTCCCACCACGACGG
CAATCACCGCCCCTCACCCTCCCTCTCTTCTGCTCCTGCATGCTACCGCT
GCCAAGGAAGCCAACAAGGCCACAATGAGTCCTCGGAGAAGAAGTGCACT
GGAGGCTGAATTCCGACGACTGGCACTGAAGACCCAAGGCTTATATTTTG
TGTCCTTATCTGCCTTTTATACAAGTGGAGAGGTCGCGGAATTGTTGAAG
GAGAAGCTGCTGGCAAAGACGGAGGTGGATTCGTTTTGGATGGGAGAGGT
GGGGGATACGGACGAGATGGCGGACCTTGAGGGGTTTCTTGCAGTCTACG
ATAGGATTGATGCATTGTTTGAGGATGGTGAGGAGGAAGAAGAGGTAGAA
GAAGAGGAAGAGCAGCAGGTGGTTGACCAAGTCAAGTCGGCTCCGCCTGT
TGGGGCGGTGGTGCAGTCTCTTACCACAGCAGCTGCTTCTGCTGCTGCTG
CTGCGACAGCCGCACCAATTGTGGGAGGGATGTTGGTGGACGAATTTATG
GCCTCGGCAGACGTGGCTCGATACTTAGAAGAGGACTTGGTCACCAAAGA
GGAGGTCATCGGATTCTGGCGGGCCGAGGCAGGGGTGGAATCGAGCACCA
GCAGCAGCAGCATTATCAGCACCAGTGGTGGCCCTTTGCTTCCACGCTTG
TCCCGCGAAGCCACTCTGAGGGTATATGCAAAGATCGAGGAACTTTTTGA
GGACGAGGAGAAGGACTCTCCAGAAATGATCGAAGAAGCAGCAGCGGAGC
GTGCCTCCGTCCCTCCTCCCCCCGCGGCGTCTGCAGAAGATGCAGAACTC
TGGGCAGAGTATACGGCAGCGATGGGCGGGCCTTTGAATAGTAAAATGGA
TTACATGACCTTTTTGAAGACAAACGAGCTCCCTGCATTGATGGCGGAAG
AGCTCATCTCTCGAGAAGAGGTGAAAGCAATGTGGGACAATGTCGCACGA
GGCGAGCTCGCTATCAATTTCGAAGGCTTCAAAGCTCTATCTTCTGACTT
GGATGACTTATTCATGGAGGAAGAAGATTGGGATACAGTAGCAGCAGCAG
AGGCAGCACGAGTGGCCCCAGAATCGGCGCCGGCTCGGCAGACGGCTGCA
GCGATGTTCGAAGCGGCGGCGGCGGCGCAGAGCAAGGCGGAGGAGCCGGA
GGCGATGCAGGTGGTGGGCCCGGCGAAGCCCCAGCTCTTGGAAGTGCTGG
GGTCGATTAAATTTGCCGGGTTGTTGGATGACGATAAGGCGACAGATGAA
TATGTGGCGGCGTTGGTGGAGGCCATGATAGAAGAAGACGCTAACTTGGC
TGTGCAGGACGAGTTGGAGATTGCAGAGTTGCAGAAGGCGATGGAGGGGG
ATTGGGATTTGGCATATAGCACATCGAGGACAATGAGGTATAATCGGGGA
TTGAGCGGGCTGGGCAAGTCATTGCCGCAGGCAGAATTTGTGGCGTTTCG
GCAGTCGATTGCGGTAAATGGATATGCGTTTGAGACAGTGTATACGGAGA
AGCTGAAGACATTGGGGAGGGAGTTGGACGTGGTGGTGGAGGGTGCGTGG
GAATTGAAAGACGTCGTTTCGATCATGGATGGAGAGCTATGTTTGATCAT
GGATGTGTTGCCAGCGACGATCAAGTACGGCTTTATGAATGAACGAATTG
AGACGGGGTGGAAAGGTGTAAGGGTTTTGAATCGGTGTGAGCTGTTGTAT
TTGGATCAAGACACCCGCGTGATGAAAGGGCAGTCGTCTGATTCCTATTT
TGTGTTCCGCCGACGGGCGGATGGTAGTACAACGATTAAAGCATGGAATA
AGGGGTCATAA

Synonyms

Publications