jgi.p|Nanoce1779_2|578282, mRNA_1879 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578282
Unique NamemRNA_1879
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length722
Alignment locationscaffold_4:250487..251551 +

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Properties
Property NameValue
TranscriptId578368
TrackFilteredModels2
ProteinId578282
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:250487..251551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578282gene_1879Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578282mRNA_1879-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1879CDS_1879Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1879 ID=mRNA_1879|Name=jgi.p|Nanoce1779_2|578282|organism=Nannochloropsis oceanica|type=mRNA|length=722bp
ACAGAGTGTAACCATGGCGGACAAAGGCCCCGTGACCATTCGCTCCCGGA
AGTTCATCCGTAATGCCCTTCTCGCGCGGCGTCAGATGATCATTGACGTG
CTTCACCCCGGCCGTGCCAACGTGCCCAAGGCGGAGCTGCAAGAGATCAT
CGCAGGGATGCACAAGGGCGCCAAGCCGGAGACGACGTTCCTGTTTGGCT
TCCGCACGGCCTTCGGTGGGGGGAAGAGCACGGGTTTTGCCTTGATTTAC
GATACGGTAGAGGATGCGAAGAAGTTTGAGCCTAAACACCGGTTGGTCCG
CGCGGGGTTGAAGGAGAAGAAGGAGACTTCGCGAAAGCAGATTAAAGAGG
CCAAGAACCGAGGAAAGAAGATTCGTGGTACAGGCCGACGGCTGGCCAGG
CACAAGGCCAAGAAGGCGAACAAGGGGTAAAGCAGCAGCAGCAGCAGGAG
GAGGAATGGCGAGCCGAGTGGTTGCGAGGGAAGGAGGGGTAGAAGGGTTT
AGAGCGAGCCGTGTTCAGAGAGGCAGGCACGGACGAGGTAGGGGAAGAGG
GAAAAGGTCGAAAGACTTTTATTTCTTGCTTCTTTCTCCTCTACTCTTCT
TGTCGTTCTTCTTTTGGTGTTCCTCTCTGAGGAGGGGAGGTGTTAGGGAG
GGCTCATGGCTGTTGGTGACGATAAGTCAGTTAAGAAAGAAGCAAGGCTG
GCCAAGCCGACAACTATCAAAA
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protein sequence of jgi.p|Nanoce1779_2|578282

>mRNA_1879-protein ID=mRNA_1879-protein|Name=jgi.p|Nanoce1779_2|578282|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKAELQEIIAGMH
KGAKPETTFLFGFRTAFGGGKSTGFALIYDTVEDAKKFEPKHRLVRAGLK
EKKETSRKQIKEAKNRGKKIRGTGRRLARHKAKKANKG*
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mRNA from alignment at scaffold_4:250487..251551+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1879 ID=mRNA_1879|Name=jgi.p|Nanoce1779_2|578282|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp|location=Sequence derived from alignment at scaffold_4:250487..251551+ (Nannochloropsis oceanica)
ACAGAGTGTAACCATGGCGGACAAAGGCCCCGTGACCATTCGCTCCCGGA
AGTTCATCCGTAATGCCCTTCTCGCGCGGCGTCAGATGGTAAGTGTCCCA
CGCCTAAGCCACAGCGTCTCTAAATTCAATGTCATGCCTTGGTTTGCATG
AACATCCATTCACTCACGATCTCCTATCATTACTCACTACAGATCATTGA
CGTGCTTCACCCCGGCCGTGCCAACGTGCCCAAGGCGGAGCTGCAAGAGA
TCATCGCAGGGGTAAGTTTCTGCTCGCCTGAAAGTTGACGAGTGATGGGG
AGAGGGGGCTTGGTGGAGGACCTGCAGTGATCAAGTCCATACGAAAATAA
GAAGAAGTAGGAAAGGGAGGGTGTGTGAAGGAGGATGCTGCGATAGACGA
TACGACGACCCGGAGCTCTCCTCTCGCCCTTTGATGCCCACAACCCTCCC
CATCAAACTCACCCTCTTTCTTCCCCACTTCCCCACACTCATAACGACAG
ATGCACAAGGGCGCCAAGCCGGAGACGACGTTCCTGTTTGGCTTCCGCAC
GGCCTTCGGTGGGGGGAAGAGCACGGGTTTTGCCTTGATTTACGATACGG
TAGAGGATGCGAAGAAGTTTGAGCCTAAACACCGGTTGGTCCGCGCGGGG
TTGAAGGAGAAGAAGGAGACTTCGCGAAAGCAGATTAAAGAGGCCAAGAA
CCGAGGAAAGAAGATTCGTGGTACAGGCCGACGGCTGGCCAGGCACAAGG
CCAAGAAGGCGAACAAGGGGTAAAGCAGCAGCAGCAGCAGGAGGAGGAAT
GGCGAGCCGAGTGGTTGCGAGGGAAGGAGGGGTAGAAGGGTTTAGAGCGA
GCCGTGTTCAGAGAGGCAGGCACGGACGAGGTAGGGGAAGAGGGAAAAGG
TCGAAAGACTTTTATTTCTTGCTTCTTTCTCCTCTACTCTTCTTGTCGTT
CTTCTTTTGGTGTTCCTCTCTGAGGAGGGGAGGTGTTAGGGAGGGCTCAT
GGCTGTTGGTGACGATAAGTCAGTTAAGAAAGAAGCAAGGCTGGCCAAGC
CGACAACTATCAAAA
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Coding sequence (CDS) from alignment at scaffold_4:250487..251551+

>mRNA_1879 ID=mRNA_1879|Name=jgi.p|Nanoce1779_2|578282|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_4:250487..251551+ (Nannochloropsis oceanica)
ATGGCGGACAAAGGCCCCGTGACCATTCGCTCCCGGAAGTTCATCCGTAA
TGCCCTTCTCGCGCGGCGTCAGATGATCATTGACGTGCTTCACCCCGGCC
GTGCCAACGTGCCCAAGGCGGAGCTGCAAGAGATCATCGCAGGGATGCAC
AAGGGCGCCAAGCCGGAGACGACGTTCCTGTTTGGCTTCCGCACGGCCTT
CGGTGGGGGGAAGAGCACGGGTTTTGCCTTGATTTACGATACGGTAGAGG
ATGCGAAGAAGTTTGAGCCTAAACACCGGTTGGTCCGCGCGGGGTTGAAG
GAGAAGAAGGAGACTTCGCGAAAGCAGATTAAAGAGGCCAAGAACCGAGG
AAAGAAGATTCGTGGTACAGGCCGACGGCTGGCCAGGCACAAGGCCAAGA
AGGCGAACAAGGGGTAAATGGCGGACAAAGGCCCCGTGACCATTCGCTCC
CGGAAGTTCATCCGTAATGCCCTTCTCGCGCGGCGTCAGATGATCATTGA
CGTGCTTCACCCCGGCCGTGCCAACGTGCCCAAGGCGGAGCTGCAAGAGA
TCATCGCAGGGATGCACAAGGGCGCCAAGCCGGAGACGACGTTCCTGTTT
GGCTTCCGCACGGCCTTCGGTGGGGGGAAGAGCACGGGTTTTGCCTTGAT
TTACGATACGGTAGAGGATGCGAAGAAGTTTGAGCCTAAACACCGGTTGG
TCCGCGCGGGGTTGAAGGAGAAGAAGGAGACTTCGCGAAAGCAGATTAAA
GAGGCCAAGAACCGAGGAAAGAAGATTCGTGGTACAGGCCGACGGCTGGC
CAGGCACAAGGCCAAGAAGGCGAACAAGGGGTAAATGGCGGACAAAGGCC
CCGTGACCATTCGCTCCCGGAAGTTCATCCGTAATGCCCTTCTCGCGCGG
CGTCAGATGATCATTGACGTGCTTCACCCCGGCCGTGCCAACGTGCCCAA
GGCGGAGCTGCAAGAGATCATCGCAGGGATGCACAAGGGCGCCAAGCCGG
AGACGACGTTCCTGTTTGGCTTCCGCACGGCCTTCGGTGGGGGGAAGAGC
ACGGGTTTTGCCTTGATTTACGATACGGTAGAGGATGCGAAGAAGTTTGA
GCCTAAACACCGGTTGGTCCGCGCGGGGTTGAAGGAGAAGAAGGAGACTT
CGCGAAAGCAGATTAAAGAGGCCAAGAACCGAGGAAAGAAGATTCGTGGT
ACAGGCCGACGGCTGGCCAGGCACAAGGCCAAGAAGGCGAACAAGGGGTA
A
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Synonyms
Publications