jgi.p|Nanoce1779_2|524525, mRNA_1878 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524525
Unique NamemRNA_1878
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length480
Alignment locationscaffold_4:249029..249508 -

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Properties
Property NameValue
TranscriptId524611
TrackFilteredModels2
ProteinId524525
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:249029..249508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524525gene_1878Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1878CDS_1878Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524525mRNA_1878-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1878 ID=mRNA_1878|Name=jgi.p|Nanoce1779_2|524525|organism=Nannochloropsis oceanica|type=mRNA|length=480bp
TTCCAACGCACAAAGCCCCACTTGAATATTGGCACCATCGGACACGTCGA
CCACGGCAAGACCACGCTTACAGCCGCTATCACCAAGGTAGGGAAGGAGG
GAGGAAACGCGGGGGGACGGGTCAAACGGTCGTCCCCGACAGAGGTACAT
ACCCACAACAGAGACTCATCCATTCATTCTTTCGTTTCTGCCGTCTCCCG
ACAGGTGCTAGCTGAGGCGGGTGGCGCAGAGTTCCGCTCATACGACGATA
TTGACAAGGCCCCGGAAGAGCGACAGCGGTACGTGCTACTGCTTGCTTGT
CCCTCCCTCCGTTCCTTCCTTCCTCCCTCCCTCCCTCCCGTCCTCCGACT
CACCCATCTTTTATTGATGTGCTCCACAGCAAGATCACCATCAACACCTC
GCATGTGGAGTATGAGACACCCAAGCGGCATTATGCTCACGTGGACTGCC
CGGGCCATGCTGACTACGTCAAGAATATGA
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protein sequence of jgi.p|Nanoce1779_2|524525

>mRNA_1878-protein ID=mRNA_1878-protein|Name=jgi.p|Nanoce1779_2|524525|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
FQRTKPHLNIGTIGHVDHGKTTLTAAITKVGKEGGNAGGRVKRSSPTEVH
THNRDSSIHSFVSAVSRQVLAEAGGAEFRSYDDIDKAPEERQRYVLLLAC
PSLRSFLPPSLPPVLRLTHLLLMCSTARSPSTPRMWSMRHPSGIMLTWTA
RAMLTTSRI*
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mRNA from alignment at scaffold_4:249029..249508-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1878 ID=mRNA_1878|Name=jgi.p|Nanoce1779_2|524525|organism=Nannochloropsis oceanica|type=mRNA|length=480bp|location=Sequence derived from alignment at scaffold_4:249029..249508- (Nannochloropsis oceanica)
TTCCAACGCACAAAGCCCCACTTGAATATTGGCACCATCGGACACGTCGA
CCACGGCAAGACCACGCTTACAGCCGCTATCACCAAGGTAGGGAAGGAGG
GAGGAAACGCGGGGGGACGGGTCAAACGGTCGTCCCCGACAGAGGTACAT
ACCCACAACAGAGACTCATCCATTCATTCTTTCGTTTCTGCCGTCTCCCG
ACAGGTGCTAGCTGAGGCGGGTGGCGCAGAGTTCCGCTCATACGACGATA
TTGACAAGGCCCCGGAAGAGCGACAGCGGTACGTGCTACTGCTTGCTTGT
CCCTCCCTCCGTTCCTTCCTTCCTCCCTCCCTCCCTCCCGTCCTCCGACT
CACCCATCTTTTATTGATGTGCTCCACAGCAAGATCACCATCAACACCTC
GCATGTGGAGTATGAGACACCCAAGCGGCATTATGCTCACGTGGACTGCC
CGGGCCATGCTGACTACGTCAAGAATATGA
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Coding sequence (CDS) from alignment at scaffold_4:249029..249508-

>mRNA_1878 ID=mRNA_1878|Name=jgi.p|Nanoce1779_2|524525|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_4:249029..249508- (Nannochloropsis oceanica)
TTCCAACGCACAAAGCCCCACTTGAATATTGGCACCATCGGACACGTCGA
CCACGGCAAGACCACGCTTACAGCCGCTATCACCAAGGTAGGGAAGGAGG
GAGGAAACGCGGGGGGACGGGTCAAACGGTCGTCCCCGACAGAGGTACAT
ACCCACAACAGAGACTCATCCATTCATTCTTTCGTTTCTGCCGTCTCCCG
ACAGGTGCTAGCTGAGGCGGGTGGCGCAGAGTTCCGCTCATACGACGATA
TTGACAAGGCCCCGGAAGAGCGACAGCGGTACGTGCTACTGCTTGCTTGT
CCCTCCCTCCGTTCCTTCCTTCCTCCCTCCCTCCCTCCCGTCCTCCGACT
CACCCATCTTTTATTGATGTGCTCCACAGCAAGATCACCATCAACACCTC
GCATGTGGAGTATGAGACACCCAAGCGGCATTATGCTCACGTGGACTGCC
CGGGCCATGCTGACTACGTCAAGAATATGA
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Synonyms
Publications