jgi.p|Nanoce1779_2|578267, mRNA_1875 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578267
Unique Name	mRNA_1875
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1757
Alignment location	scaffold_4:238607..240363 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578353
Track	FilteredModels2
ProteinId	578267

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:238607..240363 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578267	gene_1875	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578267	mRNA_1875-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1875	CDS_1875	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:238607..240363+
coding sequence from alignment at scaffold_4:238607..240363+

mRNA sequence

>mRNA_1875 ID=mRNA_1875|Name=jgi.p|Nanoce1779_2|578267|organism=Nannochloropsis oceanica|type=mRNA|length=1757bp
CGAGAAAAATGACGAAAAGGACACGGCCGCCACTACCTCCACCCCCTTTC
CTGTCCTTCTCCCTCCCCCTCTTCCTCCTCCTACAAATCATTTTAGACGC
CGCCACCGCCTTCCTCCTCCCTCTCCCCACCCACCCTCCCCGCCTACGAC
AGCCCTTCCCGCCACCTTACGCCACCACTACCTCCTCGCCAAATAACAAC
AACGACGACGTCTCTCCCTGCCTCCCCACATCATCCTCCTTCACCTATTC
CTCCTCCATTCCCACCCGCACCCGTCTCTGTGTCCGTCCCGCCAACAAGG
CGGACCTACGGCGCGTGGCCACCATGCAAGTTGCCGAGTACGGCGGAGAC
GGTATTCTTTTCTTCTGGCACTATTTACAAGAACTCGATCGGCTTCAAAC
TTCTTATTGGGTCGAGCCCGTGCGACACACAATGCTTGTCCTTGTCGACG
ACTCCTCTTCCTCCCCCTCCTCCCTCTCTCCCTCCTCCTCATCATTCCCC
TTTTCCCCCCTCTCTGTGGCCCTCCGTGCGCTCGACAACTTTTTCCTAGG
CGACCCGCGCATTGTGGGCTTCGTGGACTTGGATGCACGGGAGCGCCGCG
TGGACAAAACCACCCCCGACCCCTACCTCTCCGATTTAATCGTTGACGCC
TCTCGACGCGGCCAAGGGCTAGGGAAGGCCTTGATGCTCGAGGCAGAGGC
GGAGGCGGAGAGGTGGGGCTTTCCAGCAGTGTATTTAAAGGTCCGAAAAA
ATAACGCACGGGGATATGGGTTGTACGCGTCGCTGGGGTACCAGGTGCTG
TGGGAGTGGCCTGGGGAAGGGGTGTGGTTGATGAGGAAGTGGGTAATGGA
TGAGGGGGAAGAAGCACGGGAGGAGGCGGAGAAGAAAGAGAGGGAGGACT
GTCAGATGATGGTGGGGACAGTGATGATGCCATGTATGAATTGGGTGGAA
GGGGAGGTGAAAGACGTGGTGGAGGGAAGGAAAGAGGAGGGGGTGAAGGA
TGAGGGGGAGTAGGTGTATCGAAGACAGACATGTATTTGTAAGCGGGCAA
GAAAGAAAGACACACATGGGAAGCTATGTGTCTTGTACGCCTTGACACTA
TAGGGGATCGAAGGATAGTGGGTCTAGCTGTATCTATATTCTCCGTATCC
TCGTCGTGGGACTCGTGTCTTTCCCCCTTTATGATATTTTGATAACATCA
TTGCCGTTACTTCTCGGGATAGGGAGGATCCGAGGCCAACATGCGAGGCG
AGCGGAGGAGAGGGGAGGGGAGGCTTGCAATAGAGAAAGGAGGCGAGAGC
AGCCACCTCAATCCACCCTCTTTACAGTCATGACCCTCATTAAAAGCACC
AAATAACTGTAATCAAGCTCACCTGGCAAAAACAAGCGACAGTTTGGCTT
CGATTGCTTTCCCTCGAGCCGTCGACCAGTCGGCAGAGAGAAATTGTTGT
TTCTCGTACTGGTTCAGGTCGGGACGTGGTCTTCGTTTGCATCCATTCGG
TGTACCTCGAGGGGCAGCAGTAGGAGGATACCTCCCCTTATTGTGTCATT
CTTTCCCCCCCAATATTCGTATCCTCTGGTAATTTTTCTTCTGATTCTTT
CTCTACACCTTCTGCTTCTTCTCCTTTTACTTGTTTTCTACTTTGCTTCT
CTATCTTGCTTCTCTGTTCTGCTTTCCACTAAGACATGTGCCGGTAATCC
GCCACACATAAATCACACGCACTTTCCATGCATACCCTCCCTCCCTCCCT
CCCTCCC

protein sequence of jgi.p|Nanoce1779_2|578267

>mRNA_1875-protein ID=mRNA_1875-protein|Name=jgi.p|Nanoce1779_2|578267|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MTKRTRPPLPPPPFLSFSLPLFLLLQIILDAATAFLLPLPTHPPRLRQPF
PPPYATTTSSPNNNNDDVSPCLPTSSSFTYSSSIPTRTRLCVRPANKADL
RRVATMQVAEYGGDGILFFWHYLQELDRLQTSYWVEPVRHTMLVLVDDSS
SSPSSLSPSSSSFPFSPLSVALRALDNFFLGDPRIVGFVDLDARERRVDK
TTPDPYLSDLIVDASRRGQGLGKALMLEAEAEAERWGFPAVYLKVRKNNA
RGYGLYASLGYQVLWEWPGEGVWLMRKWVMDEGEEAREEAEKKEREDCQM
MVGTVMMPCMNWVEGEVKDVVEGRKEEGVKDEGE*

mRNA from alignment at scaffold_4:238607..240363+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1875 ID=mRNA_1875|Name=jgi.p|Nanoce1779_2|578267|organism=Nannochloropsis oceanica|type=mRNA|length=1757bp|location=Sequence derived from alignment at scaffold_4:238607..240363+ (Nannochloropsis oceanica)
CGAGAAAAATGACGAAAAGGACACGGCCGCCACTACCTCCACCCCCTTTC
CTGTCCTTCTCCCTCCCCCTCTTCCTCCTCCTACAAATCATTTTAGACGC
CGCCACCGCCTTCCTCCTCCCTCTCCCCACCCACCCTCCCCGCCTACGAC
AGCCCTTCCCGCCACCTTACGCCACCACTACCTCCTCGCCAAATAACAAC
AACGACGACGTCTCTCCCTGCCTCCCCACATCATCCTCCTTCACCTATTC
CTCCTCCATTCCCACCCGCACCCGTCTCTGTGTCCGTCCCGCCAACAAGG
CGGACCTACGGCGCGTGGCCACCATGCAAGTTGCCGAGTACGGCGGAGAC
GGTATTCTTTTCTTCTGGCACTATTTACAAGAACTCGATCGGCTTCAAAC
TTCTTATTGGGTCGAGCCCGTGCGACACACAATGCTTGTCCTTGTCGACG
ACTCCTCTTCCTCCCCCTCCTCCCTCTCTCCCTCCTCCTCATCATTCCCC
TTTTCCCCCCTCTCTGTGGCCCTCCGTGCGCTCGACAACTTTTTCCTAGG
CGACCCGCGCATTGTGGGCTTCGTGGACTTGGATGCACGGGAGCGCCGCG
TGGACAAAACCACCCCCGACCCCTACCTCTCCGATTTAATCGTTGACGCC
TCTCGACGCGGCCAAGGGCTAGGGAAGGCCTTGATGCTCGAGGCAGAGGC
GGAGGCGGAGAGGTGGGGCTTTCCAGCAGTGTATTTAAAGGTCCGAAAAA
ATAACGCACGGGGATATGGGTTGTACGCGTCGCTGGGGTACCAGGTGCTG
TGGGAGTGGCCTGGGGAAGGGGTGTGGTTGATGAGGAAGTGGGTAATGGA
TGAGGGGGAAGAAGCACGGGAGGAGGCGGAGAAGAAAGAGAGGGAGGACT
GTCAGATGATGGTGGGGACAGTGATGATGCCATGTATGAATTGGGTGGAA
GGGGAGGTGAAAGACGTGGTGGAGGGAAGGAAAGAGGAGGGGGTGAAGGA
TGAGGGGGAGTAGGTGTATCGAAGACAGACATGTATTTGTAAGCGGGCAA
GAAAGAAAGACACACATGGGAAGCTATGTGTCTTGTACGCCTTGACACTA
TAGGGGATCGAAGGATAGTGGGTCTAGCTGTATCTATATTCTCCGTATCC
TCGTCGTGGGACTCGTGTCTTTCCCCCTTTATGATATTTTGATAACATCA
TTGCCGTTACTTCTCGGGATAGGGAGGATCCGAGGCCAACATGCGAGGCG
AGCGGAGGAGAGGGGAGGGGAGGCTTGCAATAGAGAAAGGAGGCGAGAGC
AGCCACCTCAATCCACCCTCTTTACAGTCATGACCCTCATTAAAAGCACC
AAATAACTGTAATCAAGCTCACCTGGCAAAAACAAGCGACAGTTTGGCTT
CGATTGCTTTCCCTCGAGCCGTCGACCAGTCGGCAGAGAGAAATTGTTGT
TTCTCGTACTGGTTCAGGTCGGGACGTGGTCTTCGTTTGCATCCATTCGG
TGTACCTCGAGGGGCAGCAGTAGGAGGATACCTCCCCTTATTGTGTCATT
CTTTCCCCCCCAATATTCGTATCCTCTGGTAATTTTTCTTCTGATTCTTT
CTCTACACCTTCTGCTTCTTCTCCTTTTACTTGTTTTCTACTTTGCTTCT
CTATCTTGCTTCTCTGTTCTGCTTTCCACTAAGACATGTGCCGGTAATCC
GCCACACATAAATCACACGCACTTTCCATGCATACCCTCCCTCCCTCCCT
CCCTCCC

Coding sequence (CDS) from alignment at scaffold_4:238607..240363+

>mRNA_1875 ID=mRNA_1875|Name=jgi.p|Nanoce1779_2|578267|organism=Nannochloropsis oceanica|type=CDS|length=1005bp|location=Sequence derived from alignment at scaffold_4:238607..240363+ (Nannochloropsis oceanica)
ATGACGAAAAGGACACGGCCGCCACTACCTCCACCCCCTTTCCTGTCCTT
CTCCCTCCCCCTCTTCCTCCTCCTACAAATCATTTTAGACGCCGCCACCG
CCTTCCTCCTCCCTCTCCCCACCCACCCTCCCCGCCTACGACAGCCCTTC
CCGCCACCTTACGCCACCACTACCTCCTCGCCAAATAACAACAACGACGA
CGTCTCTCCCTGCCTCCCCACATCATCCTCCTTCACCTATTCCTCCTCCA
TTCCCACCCGCACCCGTCTCTGTGTCCGTCCCGCCAACAAGGCGGACCTA
CGGCGCGTGGCCACCATGCAAGTTGCCGAGTACGGCGGAGACGGTATTCT
TTTCTTCTGGCACTATTTACAAGAACTCGATCGGCTTCAAACTTCTTATT
GGGTCGAGCCCGTGCGACACACAATGCTTGTCCTTGTCGACGACTCCTCT
TCCTCCCCCTCCTCCCTCTCTCCCTCCTCCTCATCATTCCCCTTTTCCCC
CCTCTCTGTGGCCCTCCGTGCGCTCGACAACTTTTTCCTAGGCGACCCGC
GCATTGTGGGCTTCGTGGACTTGGATGCACGGGAGCGCCGCGTGGACAAA
ACCACCCCCGACCCCTACCTCTCCGATTTAATCGTTGACGCCTCTCGACG
CGGCCAAGGGCTAGGGAAGGCCTTGATGCTCGAGGCAGAGGCGGAGGCGG
AGAGGTGGGGCTTTCCAGCAGTGTATTTAAAGGTCCGAAAAAATAACGCA
CGGGGATATGGGTTGTACGCGTCGCTGGGGTACCAGGTGCTGTGGGAGTG
GCCTGGGGAAGGGGTGTGGTTGATGAGGAAGTGGGTAATGGATGAGGGGG
AAGAAGCACGGGAGGAGGCGGAGAAGAAAGAGAGGGAGGACTGTCAGATG
ATGGTGGGGACAGTGATGATGCCATGTATGAATTGGGTGGAAGGGGAGGT
GAAAGACGTGGTGGAGGGAAGGAAAGAGGAGGGGGTGAAGGATGAGGGGG
AGTAG

Synonyms

Publications