jgi.p|Nanoce1779_2|578262, mRNA_1874 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578262
Unique NamemRNA_1874
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length581
Alignment locationscaffold_4:236774..238040 -

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Properties
Property NameValue
TranscriptId578348
TrackFilteredModels2
ProteinId578262
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:236774..238040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578262gene_1874Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578262mRNA_1874-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1874CDS_1874Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1874 ID=mRNA_1874|Name=jgi.p|Nanoce1779_2|578262|organism=Nannochloropsis oceanica|type=mRNA|length=581bp
AGCAAGCGGCTTTCCGCTACATTCACACCGGAGTTTCTCTCGTTTAGCTA
GCCATGGAACCGGCGGGGGAGATAGACTTGCCTCCTGGCTTCACACCGGC
GGGAGGAGGAGGAATGGGAGGGATGATAGGGGGCGGAGGCATGTCGCAAG
AGGCGGCAGAGGCACAAAAAGCCAAGCAAGCCGAGATGGAGGAGCGGAGG
CAATTCATGCTTGACCAGATTTTGCTGCCAGAGGCGAAGGAGCGCTTAGC
CCGGATAGCGATCGTCCGCAAAGAGAAAGCCCGTGCCGTAGAGGACATGC
TCTTGCAAGCCGCGACCTCAGGCAGGCTCGGTGGGAAGGTGACCGAAGAG
CAGCTCATTCAGATGCTCGAGCAGGTATCGTCTCAAGTGGAGAAGAAAGC
CACCAAAGTCACCATCCAACGGCGGCGGTACTTGGACGAAGACGATGACG
ACAATGACGACGACTTGTTGTAGTGCAGAAGGGAATGGGGGAATTGAGGA
GGGATAGGGTGCATGGGTGTTCGAATCGACGGATGGACAGCAAGGAGGGC
TCGAAAAGAAACAATTGTACAGCTTTAGAAA
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protein sequence of jgi.p|Nanoce1779_2|578262

>mRNA_1874-protein ID=mRNA_1874-protein|Name=jgi.p|Nanoce1779_2|578262|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MEPAGEIDLPPGFTPAGGGGMGGMIGGGGMSQEAAEAQKAKQAEMEERRQ
FMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQ
LIQMLEQVSSQVEKKATKVTIQRRRYLDEDDDDNDDDLL*
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mRNA from alignment at scaffold_4:236774..238040-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1874 ID=mRNA_1874|Name=jgi.p|Nanoce1779_2|578262|organism=Nannochloropsis oceanica|type=mRNA|length=1267bp|location=Sequence derived from alignment at scaffold_4:236774..238040- (Nannochloropsis oceanica)
AGCAAGCGGCTTTCCGCTACATTCACACCGGAGTTTCTCTCGTTTAGCTA
GCCATGGAACCGGCGGGGGAGATAGACTTGCCTCCTGGCTTCACACCGGC
GGGAGGAGGAGGAATGGGAGGGATGATAGGGGGCGGAGGCATGTCGCAAG
AGGCGGCAGAGGCACAAAAAGCCAAGGTGCGTCCTTGTGATGGTAGAAAG
AGACAGGGAAGAGGAGAATAAGGTAGACATAATAAAGAGGTGTTGTTACT
CGCATGCCAATCATCTGTGCGCCGCCCTATTCAATTAACTCTCCTTTCCG
CTTCCTCATTTCTCCCTTTCCACACACAGCAAGCCGAGATGGAGGAGCGG
AGGCAATTCATGCTTGACCAGATTTTGCTGCCAGAGGCGAAGGAGCGCTT
AGCCCGGATAGGTAAGTGGGTGGGCGGTGGGTATAAATCGTTTATTCTGA
TAGAGCACGGAATACGAGGAGCCTTTCTGTTTGTGATGGCCGAGTGTTCG
AGCAGAACATTTCCCCCTTTTTGGAAAGAATAGACGACAAAGCCTTCCAT
CTAGAGATAAGGCTGCCTGGAAGCTCTTTACAATGGTCATCCTTTCTCTT
CCGATGGGCCAGTGGAGGGAATTTGGTGAGCTGGAGAGGCTGCGGTGTAG
GCCTTGTGCCGAGATTGGGCGTTTGGATATCGTTTTCTTACATCATTGTC
AAGAAGGGACTTGAGTGCTGTATCGAGATATATGCACTTGGAATATGCTT
GAAAATCTGAACGAAAATTTGGAAAGCTATCTCCGAAAGAGAGGGATGTA
GATGATATGTCTGATTGGAGTGCGTGCTCCCCAATCTTATGTCTTCCCCT
GTGCCGATTTTCAGTATTGTATCCGCCCCCGACGCGCTAGTGCACCTCAT
CGACATATTTTCTTTCCCCCCCGCATTCATTTATGATTTCACAGCGATCG
TCCGCAAAGAGAAAGCCCGTGCCGTAGAGGACATGCTCTTGCAAGCCGCG
ACCTCAGGCAGGCTCGGTGGGAAGGTGACCGAAGAGCAGCTCATTCAGAT
GCTCGAGCAGGTATCGTCTCAAGTGGAGAAGAAAGCCACCAAAGTCACCA
TCCAACGGCGGCGGTACTTGGACGAAGACGATGACGACAATGACGACGAC
TTGTTGTAGTGCAGAAGGGAATGGGGGAATTGAGGAGGGATAGGGTGCAT
GGGTGTTCGAATCGACGGATGGACAGCAAGGAGGGCTCGAAAAGAAACAA
TTGTACAGCTTTAGAAA
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Coding sequence (CDS) from alignment at scaffold_4:236774..238040-

>mRNA_1874 ID=mRNA_1874|Name=jgi.p|Nanoce1779_2|578262|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_4:236774..238040- (Nannochloropsis oceanica)
CGATCGTCCGCAAAGAGAAAGCCCGTGCCGTAGAGGACATGCTCTTGCAA
GCCGCGACCTCAGGCAGGCTCGGTGGGAAGGTGACCGAAGAGCAGCTCAT
TCAGATGCTCGAGCAGGTATCGTCTCAAGTGGAGAAGAAAGCCACCAAAG
TCACCATCCAACGGCGGCGGTACTTGGACGAAGACGATGACGACAATGAC
GACGACTTGTTGTAGCAAGCCGAGATGGAGGAGCGGAGGCAATTCATGCT
TGACCAGATTTTGCTGCCAGAGGCGAAGGAGCGCTTAGCCCGGATAGATG
GAACCGGCGGGGGAGATAGACTTGCCTCCTGGCTTCACACCGGCGGGAGG
AGGAGGAATGGGAGGGATGATAGGGGGCGGAGGCATGTCGCAAGAGGCGG
CAGAGGCACAAAAAGCCAAGCGATCGTCCGCAAAGAGAAAGCCCGTGCCG
TAGAGGACATGCTCTTGCAAGCCGCGACCTCAGGCAGGCTCGGTGGGAAG
GTGACCGAAGAGCAGCTCATTCAGATGCTCGAGCAGGTATCGTCTCAAGT
GGAGAAGAAAGCCACCAAAGTCACCATCCAACGGCGGCGGTACTTGGACG
AAGACGATGACGACAATGACGACGACTTGTTGTAGCAAGCCGAGATGGAG
GAGCGGAGGCAATTCATGCTTGACCAGATTTTGCTGCCAGAGGCGAAGGA
GCGCTTAGCCCGGATAGATGGAACCGGCGGGGGAGATAGACTTGCCTCCT
GGCTTCACACCGGCGGGAGGAGGAGGAATGGGAGGGATGATAGGGGGCGG
AGGCATGTCGCAAGAGGCGGCAGAGGCACAAAAAGCCAAGCGATCGTCCG
CAAAGAGAAAGCCCGTGCCGTAGAGGACATGCTCTTGCAAGCCGCGACCT
CAGGCAGGCTCGGTGGGAAGGTGACCGAAGAGCAGCTCATTCAGATGCTC
GAGCAGGTATCGTCTCAAGTGGAGAAGAAAGCCACCAAAGTCACCATCCA
ACGGCGGCGGTACTTGGACGAAGACGATGACGACAATGACGACGACTTGT
TGTAGCAAGCCGAGATGGAGGAGCGGAGGCAATTCATGCTTGACCAGATT
TTGCTGCCAGAGGCGAAGGAGCGCTTAGCCCGGATAGATGGAACCGGCGG
GGGAGATAGACTTGCCTCCTGGCTTCACACCGGCGGGAGGAGGAGGAATG
GGAGGGATGATAGGGGGCGGAGGCATGTCGCAAGAGGCGGCAGAGGCACA
AAAAGCCAAG
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Synonyms
Publications