jgi.p|Nanoce1779_2|578251, mRNA_1872 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578251
Unique Name	mRNA_1872
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1458
Alignment location	scaffold_4:230233..232004 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578337
Track	FilteredModels2
ProteinId	578251

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:230233..232004 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578251	gene_1872	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578251	mRNA_1872-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1872	CDS_1872	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:230233..232004+
coding sequence from alignment at scaffold_4:230233..232004+

mRNA sequence

>mRNA_1872 ID=mRNA_1872|Name=jgi.p|Nanoce1779_2|578251|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
GGAGGAGGAGGCGTGAAGGGAGGGGGGGGGAAGGGAGGAAGCGGACAAGG
CAGGGGAGGAGGAGGCGGAGGAGGAGGTAAGGGACGGGCGCCGTTCAAGG
GACCCCGGCGACCGGCCAATCGGTTGCAGAACGATTACTTTTAATTTTAC
GAGGCTGATCCGGGCTGAGGGAGGGAAGTGGAAGTAGCTTCGTACATGAA
TTAAGAAATTAAGCGATGGTGCCGATAATATGGTTTTATAAAGTTCGCAG
TAGGGGTGAGGCAATATGTACGCGTACATTATTTTATGTTTGCGTGTCTC
TATTGAAACCCCCCGCCCCCCGAAAAAAGGCATCTGGATGGGCCGTCACC
GTCATCAACAACAGCCGCCTCAGAGCCAACGTCCGCCTCCTCGTCTTGCT
CTCATGTGCCCACACAAAGCCTTTGACATTCTCCACACCCGTATACCTGA
CACTCAATCGAAGTACCTGCTTCATTCAACATCCATGTGGCGCCCCCACG
CACCAAACAGGCGCGCTACAGCCGGCATAAAACTCCGCCGCTTGCCTTAA
ACCAGATAGAACACAGCCTGGGAGCAATCTGAATCTACGCATTAGGAAGC
ACTTTCGCCCAAGCACTAGCATCATCTCCAGCACCACAATCTAGGTATGC
GCACGACTGACATAGAGACGCAACAACAGCAACACGAGCCGTCGTGGATG
CGGGAAGAGGCTGCTGGAGAAGCTGTCGGCGCCTCTGCTCAACCTCACCC
GTCCTTTGCCGCCTCGAACGCCTACTCGCAGCAGCACGAGTCCACGCCCT
TGCGCAGTGCCCCTTCCTCCGTTGCGTCCTCGGTTGGGCGGCCTTACAAA
CGAGCTGTCATGCATCGTCCCTATCTCCACCCAAGAGACATCCGCCGCGG
CTTTTGCTTGAACGTTTTCATCGCCATAAACGCTGTAACTGTGCTAAGCG
CGCTCTCCGTAGCAGTAGCAGAAATTCTATCCATTATTTATCACGACCTA
TCGCCGCAGGCAGTAGCCATTCGCGTTTATGGTGTCATTTTTGCATTTGG
CGTAATTTTCACGGAGATGGGATGGACGCAGGCGATTCGAGACACGTGGC
TATTGCAGAACTGGGTTAGCCGTGGGGCAATCTACACCTTTGTCGGCCTC
CTGGCTCTAGAGCAGGAAGCCGAACGCAGGGCTGCCGTCAACTTGGCCAA
TCTTTTTATTTTTTTCGCTGGTCTAGGCCTCGTGGGCCTCGGAATTCTCT
ACTTTTTCATGGGCATCTTGTGTTTGAAAGGAGTGCGAGATCGAAAGGCG
GCAGACTATACCATTTGCCGCTCCCAGGCGGAGCTGGAGGAGGCGTTAAG
GAGGCATGGGGATACCGGGAAGGAGGATGTGGAGACGATTCCCTCGACTT
ACCAAGCGGGCGGTGGGGGAGGCTACACAAATGTGGTCATTTAGGACGGG
AGAGAGGG

protein sequence of jgi.p|Nanoce1779_2|578251

>mRNA_1872-protein ID=mRNA_1872-protein|Name=jgi.p|Nanoce1779_2|578251|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MRTTDIETQQQQHEPSWMREEAAGEAVGASAQPHPSFAASNAYSQQHEST
PLRSAPSSVASSVGRPYKRAVMHRPYLHPRDIRRGFCLNVFIAINAVTVL
SALSVAVAEILSIIYHDLSPQAVAIRVYGVIFAFGVIFTEMGWTQAIRDT
WLLQNWVSRGAIYTFVGLLALEQEAERRAAVNLANLFIFFAGLGLVGLGI
LYFFMGILCLKGVRDRKAADYTICRSQAELEEALRRHGDTGKEDVETIPS
TYQAGGGGGYTNVVI*

mRNA from alignment at scaffold_4:230233..232004+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1872 ID=mRNA_1872|Name=jgi.p|Nanoce1779_2|578251|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at scaffold_4:230233..232004+ (Nannochloropsis oceanica)
GGAGGAGGAGGCGTGAAGGGAGGGGGGGGGAAGGGAGGAAGCGGACAAGG
CAGGGGAGGAGGAGGCGGAGGAGGAGGTAAGGGACGGGCGCCGTTCAAGG
GACCCCGGCGACCGGCCAATCGGTTGCAGAACGATTACTTTTAATTTTAC
GAGGCTGATCCGGGCTGAGGGAGGGAAGTGGAAGTAGCTTCGTACATGAA
TTAAGAAATTAAGCGATGGTGCCGATAATATGGTTTTATAAAGTTCGCAG
TAGGGGTGAGGCAATATGTACGCGTACATTATTTTATGTTTGCGTGTCTC
TATTGAAACCCCCCGCCCCCCGAAAAAAGGCATCTGGATGGGCCGTCACC
GTCATCAACAACAGCCGCCTCAGAGCCAACGTCCGCCTCCTCGTCTTGCT
CTCATGTGCCCACACAAAGCCTTTGACATTCTCCACACCCGTATACCTGA
CACTCAATCGAAGTACCTGCTTCATTCAACATCCATGTGGCGCCCCCACG
CACCAAACAGGCGCGCTACAGCCGGCATAAAACTCCGCCGCTTGCCTTAA
ACCAGATAGAACACAGCCTGGGAGCAATCTGAATCTACGCATTAGGAAGC
ACTTTCGCCCAAGCACTAGCATCATCTCCAGCACCACAATCTAGGTATGC
GCACGACTGACATAGAGACGCAACAACAGCAACACGAGCCGTCGTGGATG
CGGGAAGAGGCTGCTGGAGAAGCTGTCGGCGCCTCTGCTCAACCTCACCC
GTCCTTTGCCGCCTCGAACGCCTACTCGCAGCAGCACGAGTCCACGCCCT
TGCGCAGTGCCCCTTCCTCCGTTGCGTCCTCGGTTGGGCGGCCTTACAAA
CGAGCTGTCATGCATCGTCCCTATCTCCACCCAAGAGACATCCGCCGCGG
CTTTTGCTTGAACGTTTTCATCGCCATAAACGCTGTAACTGTGCTAAGCG
CGCTCTCCGTAGCAGTAGCAGAAATTCTATCCATTATTTATCACGACCTA
TCGCCGCAGGCAGTAGCCATTCGCGTTTATGGTGTCATTTTTGCATTTGG
CGTAATTTTCACGGAGATGGGATGGACGCAGGTTTGTGAATGGAAATGGA
GGGAGGGAGGGATATTCCAAGTAGAGCAAGGACGTGAAAGGAAAGTCATG
GGAGAGAAAAACTGTACTTCATCGTAGATATCTTGCATTTAGCTTGTCAC
TCATCGCATCTTTGCCTCCCTTGTCCTCCATGCACAGGCGATTCGAGACA
CGTGGCTATTGCAGAACTGGGTTAGCCGTGGGGTAAGTTAATTTGTATAT
CTGACTGAGAGGAAACAGGGTACACGTCGCGTAGAGATAGAGAGGCCACT
ATATATGTGCGATCGGAAAATATCATCCGCCATACTGCTTCACCGCGTTC
TTACATCGTTTTCTCCCTCCCTCCCCTGCCTCCCTGTCAGGCAATCTACA
CCTTTGTCGGCCTCCTGGCTCTAGAGCAGGAAGCCGAACGCAGGGCTGCC
GTCAACTTGGCCAATCTTTTTATTTTTTTCGCTGGTCTAGGCCTCGTGGG
CCTCGGAATTCTCTACTTTTTCATGGGCATCTTGTGTTTGAAAGGAGTGC
GAGATCGAAAGGCGGCAGACTATACCATTTGCCGCTCCCAGGCGGAGCTG
GAGGAGGCGTTAAGGAGGCATGGGGATACCGGGAAGGAGGATGTGGAGAC
GATTCCCTCGACTTACCAAGCGGGCGGTGGGGGAGGCTACACAAATGTGG
TCATTTAGGACGGGAGAGAGGG

Coding sequence (CDS) from alignment at scaffold_4:230233..232004+

>mRNA_1872 ID=mRNA_1872|Name=jgi.p|Nanoce1779_2|578251|organism=Nannochloropsis oceanica|type=CDS|length=2394bp|location=Sequence derived from alignment at scaffold_4:230233..232004+ (Nannochloropsis oceanica)
ATGCGCACGACTGACATAGAGACGCAACAACAGCAACACGAGCCGTCGTG
GATGCGGGAAGAGGCTGCTGGAGAAGCTGTCGGCGCCTCTGCTCAACCTC
ACCCGTCCTTTGCCGCCTCGAACGCCTACTCGCAGCAGCACGAGTCCACG
CCCTTGCGCAGTGCCCCTTCCTCCGTTGCGTCCTCGGTTGGGCGGCCTTA
CAAACGAGCTGTCATGCATCGTCCCTATCTCCACCCAAGAGACATCCGCC
GCGGCTTTTGCTTGAACGTTTTCATCGCCATAAACGCTGTAACTGTGCTA
AGCGCGCTCTCCGTAGCAGTAGCAGAAATTCTATCCATTATTTATCACGA
CCTATCGCCGCAGGCAGTAGCCATTCGCGTTTATGGTGTCATTTTTGCAT
TTGGCGTAATTTTCACGGAGATGGGATGGACGCAGGCGATTCGAGACACG
TGGCTATTGCAGAACTGGGTTAGCCGTGGGGCAATCTACACCTTTGTCGG
CCTCCTGGCTCTAGAGCAGGAAGCCGAACGCAGGGCTGCCGTCAACTTGG
CCAATCTTTTTATTTTTTTCGCTGGTCTAGGCCTCGTGGGCCTCGGAATT
CTCTACTTTTTCATGGGCATCTTGTGTTTGAAAGGAGTGCGAGATCGAAA
GGCGGCAGACTATACCATTTGCCGCTCCCAGGCGGAGCTGGAGGAGGCGT
TAAGGAGGCATGGGGATACCGGGAAGGAGGATGTGGAGACGATTCCCTCG
ACTTACCAAGCGGGCGGTGGGGGAGGCTACACAAATGTGGTCATTTAGAT
GCGCACGACTGACATAGAGACGCAACAACAGCAACACGAGCCGTCGTGGA
TGCGGGAAGAGGCTGCTGGAGAAGCTGTCGGCGCCTCTGCTCAACCTCAC
CCGTCCTTTGCCGCCTCGAACGCCTACTCGCAGCAGCACGAGTCCACGCC
CTTGCGCAGTGCCCCTTCCTCCGTTGCGTCCTCGGTTGGGCGGCCTTACA
AACGAGCTGTCATGCATCGTCCCTATCTCCACCCAAGAGACATCCGCCGC
GGCTTTTGCTTGAACGTTTTCATCGCCATAAACGCTGTAACTGTGCTAAG
CGCGCTCTCCGTAGCAGTAGCAGAAATTCTATCCATTATTTATCACGACC
TATCGCCGCAGGCAGTAGCCATTCGCGTTTATGGTGTCATTTTTGCATTT
GGCGTAATTTTCACGGAGATGGGATGGACGCAGGCGATTCGAGACACGTG
GCTATTGCAGAACTGGGTTAGCCGTGGGGCAATCTACACCTTTGTCGGCC
TCCTGGCTCTAGAGCAGGAAGCCGAACGCAGGGCTGCCGTCAACTTGGCC
AATCTTTTTATTTTTTTCGCTGGTCTAGGCCTCGTGGGCCTCGGAATTCT
CTACTTTTTCATGGGCATCTTGTGTTTGAAAGGAGTGCGAGATCGAAAGG
CGGCAGACTATACCATTTGCCGCTCCCAGGCGGAGCTGGAGGAGGCGTTA
AGGAGGCATGGGGATACCGGGAAGGAGGATGTGGAGACGATTCCCTCGAC
TTACCAAGCGGGCGGTGGGGGAGGCTACACAAATGTGGTCATTTAGATGC
GCACGACTGACATAGAGACGCAACAACAGCAACACGAGCCGTCGTGGATG
CGGGAAGAGGCTGCTGGAGAAGCTGTCGGCGCCTCTGCTCAACCTCACCC
GTCCTTTGCCGCCTCGAACGCCTACTCGCAGCAGCACGAGTCCACGCCCT
TGCGCAGTGCCCCTTCCTCCGTTGCGTCCTCGGTTGGGCGGCCTTACAAA
CGAGCTGTCATGCATCGTCCCTATCTCCACCCAAGAGACATCCGCCGCGG
CTTTTGCTTGAACGTTTTCATCGCCATAAACGCTGTAACTGTGCTAAGCG
CGCTCTCCGTAGCAGTAGCAGAAATTCTATCCATTATTTATCACGACCTA
TCGCCGCAGGCAGTAGCCATTCGCGTTTATGGTGTCATTTTTGCATTTGG
CGTAATTTTCACGGAGATGGGATGGACGCAGGCGATTCGAGACACGTGGC
TATTGCAGAACTGGGTTAGCCGTGGGGCAATCTACACCTTTGTCGGCCTC
CTGGCTCTAGAGCAGGAAGCCGAACGCAGGGCTGCCGTCAACTTGGCCAA
TCTTTTTATTTTTTTCGCTGGTCTAGGCCTCGTGGGCCTCGGAATTCTCT
ACTTTTTCATGGGCATCTTGTGTTTGAAAGGAGTGCGAGATCGAAAGGCG
GCAGACTATACCATTTGCCGCTCCCAGGCGGAGCTGGAGGAGGCGTTAAG
GAGGCATGGGGATACCGGGAAGGAGGATGTGGAGACGATTCCCTCGACTT
ACCAAGCGGGCGGTGGGGGAGGCTACACAAATGTGGTCATTTAG

Synonyms

Publications