jgi.p|Nanoce1779_2|578247, mRNA_1870 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578247
Unique NamemRNA_1870
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1163
Alignment locationscaffold_4:226800..228087 -

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Properties
Property NameValue
TranscriptId578333
TrackFilteredModels2
ProteinId578247
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:226800..228087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578247gene_1870Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578247mRNA_1870-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1870CDS_1870Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1870 ID=mRNA_1870|Name=jgi.p|Nanoce1779_2|578247|organism=Nannochloropsis oceanica|type=mRNA|length=1163bp
ACAGTGAAAGCATGAAGGACCATATCGTGCGCCGCCTCTGTTGCGGCTGT
ATGGAGGCCGCAGCTGACGCGTCTTCTTCACCCCATCCTGTTTACATCGA
AATGTCGCCAAGTTCTCCTCGTCCCCCTGCTTCCTTCTCGTCGTTAGATC
CCACTGTAAGCCCTGCAATAAGCTGTACTATCACCAGGATGACCAAAAGC
ACCAGTATTTCGAATATCATCAGCAGCCGTAGCCTTGCTACGTATTTCAA
AGTCGAGGAAGAGCCCAAGCGTGCCCAGGAGAAAGGATTTAAGAAGATCG
TCAGCGAGTGGCCCGCCCCGCATGTCACGGTCAAGCCCTTGTCCTCGGTT
GTTATTGTTCCTGCTCCTTCTACTGACCCTTCTTCATCTGTCTCCCCCAC
TATATTCCCTCCTCAATTCCATGGCAACCTGCAGCCAGGGCCAACAAATG
AACCCTCCCCTCTCGAAAAACACCGCGAGGAGCACGTCACCGAGAGCACC
GGCACCAGCACGAACCAAAACAAAGCCCCAGGCACCTTTCTCCTCGCTGA
CAAAAACTGGGCCGCCGGCTACGTCCTTGCCTCTCCTTCATCCCCTTCCG
CGGACCCGGTCCGCGAATCGTTTATTGCCAGGCTGATGGAGGGGGTGCAG
GTAGCAATGCACAGCCACACCGGCCACTCCAGAATCCAATTGCTCTGCAC
ACTGGATGGGGCAGAGACGTTCACTTGGCGCGAGGGAGAAGCGGGGAATC
AGGTGGCCCACATGGAACATTGGTCTTCGGCGGGTTCAGGCATCTTTTGG
GGAGCGCGGGAGTCGTATGCATTCGGAGATTTCATCGAGGTGCGGAGGGG
CATCACTCCAGACCTCTCGAACCCGGGGGAGACGGGCACGGCTTCTTTGC
GGGCAGCCTGCAAAAATCGTGACTTGTCGAGATCCTTTTCTCTAATCTCT
GCGGATGGCACCATATATCTTTCCTGTGAGCAAGTGGAAACTGCATCGTT
CTTAGTTAAAGGCTTCATGGCTTTGTCGCATGAACAACGCCGGCGGCGCG
TCCGTAGGTCGAGCTGTGAGAGGGGCCTAGGGAAGAGAGAGAAAGGAGAA
GTGAATTACAGTATAGAGAGAAAGGAAAAGTGAATTACAGTATAGGAAGG
TTACAAATAAGAG
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protein sequence of jgi.p|Nanoce1779_2|578247

>mRNA_1870-protein ID=mRNA_1870-protein|Name=jgi.p|Nanoce1779_2|578247|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MKDHIVRRLCCGCMEAAADASSSPHPVYIEMSPSSPRPPASFSSLDPTVS
PAISCTITRMTKSTSISNIISSRSLATYFKVEEEPKRAQEKGFKKIVSEW
PAPHVTVKPLSSVVIVPAPSTDPSSSVSPTIFPPQFHGNLQPGPTNEPSP
LEKHREEHVTESTGTSTNQNKAPGTFLLADKNWAAGYVLASPSSPSADPV
RESFIARLMEGVQVAMHSHTGHSRIQLLCTLDGAETFTWREGEAGNQVAH
MEHWSSAGSGIFWGARESYAFGDFIEVRRGITPDLSNPGETGTASLRAAC
KNRDLSRSFSLISADGTIYLSCEQVETASFLVKGFMALSHEQRRRRVRRS
SCERGLGKREKGEVNYSIERKEK*
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mRNA from alignment at scaffold_4:226800..228087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1870 ID=mRNA_1870|Name=jgi.p|Nanoce1779_2|578247|organism=Nannochloropsis oceanica|type=mRNA|length=1288bp|location=Sequence derived from alignment at scaffold_4:226800..228087- (Nannochloropsis oceanica)
ACAGTGAAAGCATGAAGGACCATATCGTGCGCCGCCTCTGTTGCGGCTGT
ATGGAGGCCGCAGCTGACGCGTCTTCTTCACCCCATCCTGTTTACATCGA
AATGTCGCCAAGTTCTCCTCGTCCCCCTGCTTCCTTCTCGTCGTTAGATC
CCACTGTAAGCCCTGCAATAAGCTGTACTATCACCAGGATGACCAAAAGC
ACCAGTATTTCGAATATCATCAGCAGCCGTAGCCTTGCTACGTATTTCAA
AGTCGAGGAAGAGCCCAAGCGTGCCCAGGAGAAAGGATTTAAGAAGATCG
TCAGCGAGTGGCCCGCCCCGCATGTCACGGTCAAGCCCTTGTCCTCGGTT
GTTATTGTTCCTGCTCCTTCTACTGACCCTTCTTCATCTGTCTCCCCCAC
TATATTCCCTCCTCAATTCCATGGCAACCTGCAGCCAGGGCCAACAAATG
AACCCTCCCCTCTCGAAAAACACCGCGAGGAGCACGTCACCGAGAGCACC
GGCACCAGCACGAACCAAAACAAAGCCCCAGGCACCTTTCTCCTCGCTGA
CAAAAACTGGGCCGCCGGCTACGTCCTTGCCTCTCCTTCATCCCCTTCCG
CGGACCCGGTCCGCGAATCGTTTATTGCCAGGCTGATGGAGGGGGTGCAG
GTAGCAATGCACAGCCACACCGGCCACTCCAGAATCCAATTGCTCTGCAC
ACTGGATGGGGCAGAGACGTTCACTTGGCGCGAGGGAGAAGCGGGGAATC
AGGTGGCCCACATGGAACATTGGTCTTCGGCGGGTTCAGGCATCTTTTGG
GGAGCGCGGGAGTCGTATGCATTCGGAGATTTCATCGAGGTAGGTTTGTA
GGAAGGAGGGAGGAATCAGATGTAGAGACTGCAGGAATATTGTGCTTTAT
TAGACGTCAAGTCAAGTGCGCATCCTCATTTATAACTTTGGTTATATCAA
TCGCTTTACATCAGGTGCGGAGGGGCATCACTCCAGACCTCTCGAACCCG
GGGGAGACGGGCACGGCTTCTTTGCGGGCAGCCTGCAAAAATCGTGACTT
GTCGAGATCCTTTTCTCTAATCTCTGCGGATGGCACCATATATCTTTCCT
GTGAGCAAGTGGAAACTGCATCGTTCTTAGTTAAAGGCTTCATGGCTTTG
TCGCATGAACAACGCCGGCGGCGCGTCCGTAGGTCGAGCTGTGAGAGGGG
CCTAGGGAAGAGAGAGAAAGGAGAAGTGAATTACAGTATAGAGAGAAAGG
AAAAGTGAATTACAGTATAGGAAGGTTACAAATAAGAG
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Coding sequence (CDS) from alignment at scaffold_4:226800..228087-

>mRNA_1870 ID=mRNA_1870|Name=jgi.p|Nanoce1779_2|578247|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at scaffold_4:226800..228087- (Nannochloropsis oceanica)
GTGCGGAGGGGCATCACTCCAGACCTCTCGAACCCGGGGGAGACGGGCAC
GGCTTCTTTGCGGGCAGCCTGCAAAAATCGTGACTTGTCGAGATCCTTTT
CTCTAATCTCTGCGGATGGCACCATATATCTTTCCTGTGAGCAAGTGGAA
ACTGCATCGTTCTTAGTTAAAGGCTTCATGGCTTTGTCGCATGAACAACG
CCGGCGGCGCGTCCGTAGGTCGAGCTGTGAGAGGGGCCTAGGGAAGAGAG
AGAAAGGAGAAGTGAATTACAGTATAGAGAGAAAGGAAAAGTGAATGAAG
GACCATATCGTGCGCCGCCTCTGTTGCGGCTGTATGGAGGCCGCAGCTGA
CGCGTCTTCTTCACCCCATCCTGTTTACATCGAAATGTCGCCAAGTTCTC
CTCGTCCCCCTGCTTCCTTCTCGTCGTTAGATCCCACTGTAAGCCCTGCA
ATAAGCTGTACTATCACCAGGATGACCAAAAGCACCAGTATTTCGAATAT
CATCAGCAGCCGTAGCCTTGCTACGTATTTCAAAGTCGAGGAAGAGCCCA
AGCGTGCCCAGGAGAAAGGATTTAAGAAGATCGTCAGCGAGTGGCCCGCC
CCGCATGTCACGGTCAAGCCCTTGTCCTCGGTTGTTATTGTTCCTGCTCC
TTCTACTGACCCTTCTTCATCTGTCTCCCCCACTATATTCCCTCCTCAAT
TCCATGGCAACCTGCAGCCAGGGCCAACAAATGAACCCTCCCCTCTCGAA
AAACACCGCGAGGAGCACGTCACCGAGAGCACCGGCACCAGCACGAACCA
AAACAAAGCCCCAGGCACCTTTCTCCTCGCTGACAAAAACTGGGCCGCCG
GCTACGTCCTTGCCTCTCCTTCATCCCCTTCCGCGGACCCGGTCCGCGAA
TCGTTTATTGCCAGGCTGATGGAGGGGGTGCAGGTAGCAATGCACAGCCA
CACCGGCCACTCCAGAATCCAATTGCTCTGCACACTGGATGGGGCAGAGA
CGTTCACTTGGCGCGAGGGAGAAGCGGGGAATCAGGTGGCCCACATGGAA
CATTGGTCTTCGGCGGGTTCAGGCATCTTTTGGGGAGCGCGGGAGTCGTA
TGCATTCGGAGATTTCATCGAGGTGCGGAGGGGCATCACTCCAGACCTCT
CGAACCCGGGGGAGACGGGCACGGCTTCTTTGCGGGCAGCCTGCAAAAAT
CGTGACTTGTCGAGATCCTTTTCTCTAATCTCTGCGGATGGCACCATATA
TCTTTCCTGTGAGCAAGTGGAAACTGCATCGTTCTTAGTTAAAGGCTTCA
TGGCTTTGTCGCATGAACAACGCCGGCGGCGCGTCCGTAGGTCGAGCTGT
GAGAGGGGCCTAGGGAAGAGAGAGAAAGGAGAAGTGAATTACAGTATAGA
GAGAAAGGAAAAGTGAATGAAGGACCATATCGTGCGCCGCCTCTGTTGCG
GCTGTATGGAGGCCGCAGCTGACGCGTCTTCTTCACCCCATCCTGTTTAC
ATCGAAATGTCGCCAAGTTCTCCTCGTCCCCCTGCTTCCTTCTCGTCGTT
AGATCCCACTGTAAGCCCTGCAATAAGCTGTACTATCACCAGGATGACCA
AAAGCACCAGTATTTCGAATATCATCAGCAGCCGTAGCCTTGCTACGTAT
TTCAAAGTCGAGGAAGAGCCCAAGCGTGCCCAGGAGAAAGGATTTAAGAA
GATCGTCAGCGAGTGGCCCGCCCCGCATGTCACGGTCAAGCCCTTGTCCT
CGGTTGTTATTGTTCCTGCTCCTTCTACTGACCCTTCTTCATCTGTCTCC
CCCACTATATTCCCTCCTCAATTCCATGGCAACCTGCAGCCAGGGCCAAC
AAATGAACCCTCCCCTCTCGAAAAACACCGCGAGGAGCACGTCACCGAGA
GCACCGGCACCAGCACGAACCAAAACAAAGCCCCAGGCACCTTTCTCCTC
GCTGACAAAAACTGGGCCGCCGGCTACGTCCTTGCCTCTCCTTCATCCCC
TTCCGCGGACCCGGTCCGCGAATCGTTTATTGCCAGGCTGATGGAGGGGG
TGCAGGTAGCAATGCACAGCCACACCGGCCACTCCAGAATCCAATTGCTC
TGCACACTGGATGGGGCAGAGACGTTCACTTGGCGCGAGGGAGAAGCGGG
GAATCAGGTGGCCCACATGGAACATTGGTCTTCGGCGGGTTCAGGCATCT
TTTGGGGAGCGCGGGAGTCGTATGCATTCGGAGATTTCATCGAG
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Synonyms
Publications