jgi.p|Nanoce1779_2|628067, mRNA_1869 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628067
Unique NamemRNA_1869
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1723
Alignment locationscaffold_4:224937..226764 -

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Properties
Property NameValue
TranscriptId628153
TrackFilteredModels2
ProteinId628067
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:224937..226764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628067gene_1869Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628067mRNA_1869-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1869CDS_1869Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1869 ID=mRNA_1869|Name=jgi.p|Nanoce1779_2|628067|organism=Nannochloropsis oceanica|type=mRNA|length=1723bp
GGAGCTTCATTCCTTCTTCGCCACCTCAGCGTATTATTCTACGCTCCATG
TTTTATTTTGTTCAGTTTTGCCTTGCCAACCCGTGATATTGTACTCACGA
GTACATTCGCAATTTGTCCCGTGTCTGCCACTTGTTTTCACCACGTTTGA
CCTTCTTTTATTACCCGTAGGCGCAACAGCATCAGAGCACATAGCCCCTC
GCGGTCCCACATAACACCACGCACGCACGAAACGAAACACATGGCCTCCC
TGTGGCGGCCCCTCCGGCCCCAAGGCGCAAAAACAGCCCCCACTGCATCA
TTGCGCGTGCTGGCATCGTCGTTTCCCACCAATTTGACGACAAGCCGCGG
TACAGATAAAAAGAAGTCCTTCTCCTGTTTTGCGCGGCAGGAAGCCACTT
CGCTCTTTTTGATCCTGCCCTCCCGCTCGATGTCGTCCACCTCTTCTATG
AAGCGGCCCTCTGCCGCCACGTCCGTCAGGAATGGGCAGCGCAGGCCTCA
CATCATCAATTATCATCAGCACAACCAGGTACCTCCTCGGAACGGTGAAG
AGATGAGTAATCTCGCGCCTACCCCGCGGGATCTTTTTCCAGCCCCGCCT
GCGTTCGAAGCGCTCGCCCACCGCGTCACCCAGGCAGTCCAGGCCAAAGA
CCTCCCCGCCGCCATGACCCATCTCAGGCAACTTGACGCACTATACCTAC
CTTCCCCTCCTTCCTCTCCGATCTCCTCTTCCGTGCGCCTTCTTATCTCA
GGCACGGCCTATGCTGTCCTCCACCTTTGTCTTGCCGAGCGCAAGCGAAC
GGAGGGAGAAAAAGGGATCGAAGAAGCCCTCGATGTCTTAACCATGCCGA
ACCTCGCAACCTCATACGACAAGGCCTGCACCCGAATAGCCTTTACCACC
CTCCCCATCACTGACACCAGCTCATGGCCCACTACCATGGCATTTTTCCG
AAACGTTCTCACCTACTTAACGCCGGCGGCATGGCCAGCGCCTCACCAAT
TCCACCGTGCCTTGCGGCAGCTCGCCGATGCCGGCCAACCTACGCAATGC
CAATGGCTGCTCGACAGAATGCGGCGTCCTCAAGCTCTTGCTCCCCCTCA
CGAAGAAGGAAAGGAAGACAGACGACAACCGTCATTCCTACCCCCTCCTC
CCATCCCTATTGGGAGTGCTGGACAGTTGCACTCTCCTCGATGGCACCTC
CTAAAGAGCTATCTGTACTCCCACCAACCCCTCCAAGCCGTCCGTCTGCT
GCAGACCGAGAAGAACCTCCGGCTCGACTGCAATACAACCAATATGGTTT
TAAAAGGGTTGGCGAGGGAAAGATTAGGGCAGGACGCACTGAACTTCCTG
AAATGGGCTGAAGAAGTAGGAGTCAAGACCACTACCGAGAGCTACAACAA
GGTGATTATCGCCCTTGCGAAAACTAATCGTTCCTTCCATCCGTATGCGT
CGTCTTCCTCCTTTCAGCGTTTTCCTCATCCTTGTCCCCCTTCAGCGGAC
AAGGACGGACATGCCATAAGCGCTCCTACTGCTGCAGTTGATGCTGAAGC
TGATGCCGCCTCTCCTATGGACACCACAGCCGCGGCGCGCGAAGTCCTTG
CACGCATGAATGCGAAAGAAATATTACCGGATCACGTGTCTTACTGTGCA
TTGCTTGACGTGTATGCCGAAGCCAACGACGTAAAGGGCGCAGTGGCCAT
GTTCTTTGGTGAGATGTGTCAGG
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protein sequence of jgi.p|Nanoce1779_2|628067

>mRNA_1869-protein ID=mRNA_1869-protein|Name=jgi.p|Nanoce1779_2|628067|organism=Nannochloropsis oceanica|type=polypeptide|length=494bp
MASLWRPLRPQGAKTAPTASLRVLASSFPTNLTTSRGTDKKKSFSCFARQ
EATSLFLILPSRSMSSTSSMKRPSAATSVRNGQRRPHIINYHQHNQVPPR
NGEEMSNLAPTPRDLFPAPPAFEALAHRVTQAVQAKDLPAAMTHLRQLDA
LYLPSPPSSPISSSVRLLISGTAYAVLHLCLAERKRTEGEKGIEEALDVL
TMPNLATSYDKACTRIAFTTLPITDTSSWPTTMAFFRNVLTYLTPAAWPA
PHQFHRALRQLADAGQPTQCQWLLDRMRRPQALAPPHEEGKEDRRQPSFL
PPPPIPIGSAGQLHSPRWHLLKSYLYSHQPLQAVRLLQTEKNLRLDCNTT
NMVLKGLARERLGQDALNFLKWAEEVGVKTTTESYNKVIIALAKTNRSFH
PYASSSSFQRFPHPCPPSADKDGHAISAPTAAVDAEADAASPMDTTAAAR
EVLARMNAKEILPDHVSYCALLDVYAEANDVKGAVAMFFGEMCQ
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mRNA from alignment at scaffold_4:224937..226764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1869 ID=mRNA_1869|Name=jgi.p|Nanoce1779_2|628067|organism=Nannochloropsis oceanica|type=mRNA|length=1828bp|location=Sequence derived from alignment at scaffold_4:224937..226764- (Nannochloropsis oceanica)
GGAGCTTCATTCCTTCTTCGCCACCTCAGCGTATTATTCTACGCTCCATG
TTTTATTTTGTTCAGTTTTGCCTTGCCAACCCGTGATATTGTACTCACGA
GTACATTCGCAATTTGTCCCGTGTCTGCCACTTGTTTTCACCACGTTTGA
CCTTCTTTTATTACCCGTAGGCGCAACAGCATCAGAGCACATAGCCCCTC
GCGGTCCCACATAACACCACGCACGCACGAAACGAAACACATGGCCTCCC
TGTGGCGGCCCCTCCGGCCCCAAGGCGCAAAAACAGCCCCCACTGCATCA
TTGCGCGTGCTGGCATCGTCGTTTCCCACCAATTTGACGGTACGTTGATC
GTCGGTTCTCGGGCAGCATTGGCAGCTTAGGGAAATTCGCAGTCAGGCAT
ATCAAATGTGTTGGTCTCTAAATGCGCTCTACGCACCAACACAGACAAGC
CGCGGTACAGATAAAAAGAAGTCCTTCTCCTGTTTTGCGCGGCAGGAAGC
CACTTCGCTCTTTTTGATCCTGCCCTCCCGCTCGATGTCGTCCACCTCTT
CTATGAAGCGGCCCTCTGCCGCCACGTCCGTCAGGAATGGGCAGCGCAGG
CCTCACATCATCAATTATCATCAGCACAACCAGGTACCTCCTCGGAACGG
TGAAGAGATGAGTAATCTCGCGCCTACCCCGCGGGATCTTTTTCCAGCCC
CGCCTGCGTTCGAAGCGCTCGCCCACCGCGTCACCCAGGCAGTCCAGGCC
AAAGACCTCCCCGCCGCCATGACCCATCTCAGGCAACTTGACGCACTATA
CCTACCTTCCCCTCCTTCCTCTCCGATCTCCTCTTCCGTGCGCCTTCTTA
TCTCAGGCACGGCCTATGCTGTCCTCCACCTTTGTCTTGCCGAGCGCAAG
CGAACGGAGGGAGAAAAAGGGATCGAAGAAGCCCTCGATGTCTTAACCAT
GCCGAACCTCGCAACCTCATACGACAAGGCCTGCACCCGAATAGCCTTTA
CCACCCTCCCCATCACTGACACCAGCTCATGGCCCACTACCATGGCATTT
TTCCGAAACGTTCTCACCTACTTAACGCCGGCGGCATGGCCAGCGCCTCA
CCAATTCCACCGTGCCTTGCGGCAGCTCGCCGATGCCGGCCAACCTACGC
AATGCCAATGGCTGCTCGACAGAATGCGGCGTCCTCAAGCTCTTGCTCCC
CCTCACGAAGAAGGAAAGGAAGACAGACGACAACCGTCATTCCTACCCCC
TCCTCCCATCCCTATTGGGAGTGCTGGACAGTTGCACTCTCCTCGATGGC
ACCTCCTAAAGAGCTATCTGTACTCCCACCAACCCCTCCAAGCCGTCCGT
CTGCTGCAGACCGAGAAGAACCTCCGGCTCGACTGCAATACAACCAATAT
GGTTTTAAAAGGGTTGGCGAGGGAAAGATTAGGGCAGGACGCACTGAACT
TCCTGAAATGGGCTGAAGAAGTAGGAGTCAAGACCACTACCGAGAGCTAC
AACAAGGTGATTATCGCCCTTGCGAAAACTAATCGTTCCTTCCATCCGTA
TGCGTCGTCTTCCTCCTTTCAGCGTTTTCCTCATCCTTGTCCCCCTTCAG
CGGACAAGGACGGACATGCCATAAGCGCTCCTACTGCTGCAGTTGATGCT
GAAGCTGATGCCGCCTCTCCTATGGACACCACAGCCGCGGCGCGCGAAGT
CCTTGCACGCATGAATGCGAAAGAAATATTACCGGATCACGTGTCTTACT
GTGCATTGCTTGACGTGTATGCCGAAGCCAACGACGTAAAGGGCGCAGTG
GCCATGTTCTTTGGTGAGATGTGTCAGG
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Coding sequence (CDS) from alignment at scaffold_4:224937..226764-

>mRNA_1869 ID=mRNA_1869|Name=jgi.p|Nanoce1779_2|628067|organism=Nannochloropsis oceanica|type=CDS|length=2964bp|location=Sequence derived from alignment at scaffold_4:224937..226764- (Nannochloropsis oceanica)
ACAAGCCGCGGTACAGATAAAAAGAAGTCCTTCTCCTGTTTTGCGCGGCA
GGAAGCCACTTCGCTCTTTTTGATCCTGCCCTCCCGCTCGATGTCGTCCA
CCTCTTCTATGAAGCGGCCCTCTGCCGCCACGTCCGTCAGGAATGGGCAG
CGCAGGCCTCACATCATCAATTATCATCAGCACAACCAGGTACCTCCTCG
GAACGGTGAAGAGATGAGTAATCTCGCGCCTACCCCGCGGGATCTTTTTC
CAGCCCCGCCTGCGTTCGAAGCGCTCGCCCACCGCGTCACCCAGGCAGTC
CAGGCCAAAGACCTCCCCGCCGCCATGACCCATCTCAGGCAACTTGACGC
ACTATACCTACCTTCCCCTCCTTCCTCTCCGATCTCCTCTTCCGTGCGCC
TTCTTATCTCAGGCACGGCCTATGCTGTCCTCCACCTTTGTCTTGCCGAG
CGCAAGCGAACGGAGGGAGAAAAAGGGATCGAAGAAGCCCTCGATGTCTT
AACCATGCCGAACCTCGCAACCTCATACGACAAGGCCTGCACCCGAATAG
CCTTTACCACCCTCCCCATCACTGACACCAGCTCATGGCCCACTACCATG
GCATTTTTCCGAAACGTTCTCACCTACTTAACGCCGGCGGCATGGCCAGC
GCCTCACCAATTCCACCGTGCCTTGCGGCAGCTCGCCGATGCCGGCCAAC
CTACGCAATGCCAATGGCTGCTCGACAGAATGCGGCGTCCTCAAGCTCTT
GCTCCCCCTCACGAAGAAGGAAAGGAAGACAGACGACAACCGTCATTCCT
ACCCCCTCCTCCCATCCCTATTGGGAGTGCTGGACAGTTGCACTCTCCTC
GATGGCACCTCCTAAAGAGCTATCTGTACTCCCACCAACCCCTCCAAGCC
GTCCGTCTGCTGCAGACCGAGAAGAACCTCCGGCTCGACTGCAATACAAC
CAATATGGTTTTAAAAGGGTTGGCGAGGGAAAGATTAGGGCAGGACGCAC
TGAACTTCCTGAAATGGGCTGAAGAAGTAGGAGTCAAGACCACTACCGAG
AGCTACAACAAGGTGATTATCGCCCTTGCGAAAACTAATCGTTCCTTCCA
TCCGTATGCGTCGTCTTCCTCCTTTCAGCGTTTTCCTCATCCTTGTCCCC
CTTCAGCGGACAAGGACGGACATGCCATAAGCGCTCCTACTGCTGCAGTT
GATGCTGAAGCTGATGCCGCCTCTCCTATGGACACCACAGCCGCGGCGCG
CGAAGTCCTTGCACGCATGAATGCGAAAGAAATATTACCGGATCACGTGT
CTTACTGTGCATTGCTTGACGTGTATGCCGAAGCCAACGACGTAAAGGGC
GCAGTGGCCATGTTCTTTGGTGAGATGTGTCAGATGGCCTCCCTGTGGCG
GCCCCTCCGGCCCCAAGGCGCAAAAACAGCCCCCACTGCATCATTGCGCG
TGCTGGCATCGTCGTTTCCCACCAATTTGACGACAAGCCGCGGTACAGAT
AAAAAGAAGTCCTTCTCCTGTTTTGCGCGGCAGGAAGCCACTTCGCTCTT
TTTGATCCTGCCCTCCCGCTCGATGTCGTCCACCTCTTCTATGAAGCGGC
CCTCTGCCGCCACGTCCGTCAGGAATGGGCAGCGCAGGCCTCACATCATC
AATTATCATCAGCACAACCAGGTACCTCCTCGGAACGGTGAAGAGATGAG
TAATCTCGCGCCTACCCCGCGGGATCTTTTTCCAGCCCCGCCTGCGTTCG
AAGCGCTCGCCCACCGCGTCACCCAGGCAGTCCAGGCCAAAGACCTCCCC
GCCGCCATGACCCATCTCAGGCAACTTGACGCACTATACCTACCTTCCCC
TCCTTCCTCTCCGATCTCCTCTTCCGTGCGCCTTCTTATCTCAGGCACGG
CCTATGCTGTCCTCCACCTTTGTCTTGCCGAGCGCAAGCGAACGGAGGGA
GAAAAAGGGATCGAAGAAGCCCTCGATGTCTTAACCATGCCGAACCTCGC
AACCTCATACGACAAGGCCTGCACCCGAATAGCCTTTACCACCCTCCCCA
TCACTGACACCAGCTCATGGCCCACTACCATGGCATTTTTCCGAAACGTT
CTCACCTACTTAACGCCGGCGGCATGGCCAGCGCCTCACCAATTCCACCG
TGCCTTGCGGCAGCTCGCCGATGCCGGCCAACCTACGCAATGCCAATGGC
TGCTCGACAGAATGCGGCGTCCTCAAGCTCTTGCTCCCCCTCACGAAGAA
GGAAAGGAAGACAGACGACAACCGTCATTCCTACCCCCTCCTCCCATCCC
TATTGGGAGTGCTGGACAGTTGCACTCTCCTCGATGGCACCTCCTAAAGA
GCTATCTGTACTCCCACCAACCCCTCCAAGCCGTCCGTCTGCTGCAGACC
GAGAAGAACCTCCGGCTCGACTGCAATACAACCAATATGGTTTTAAAAGG
GTTGGCGAGGGAAAGATTAGGGCAGGACGCACTGAACTTCCTGAAATGGG
CTGAAGAAGTAGGAGTCAAGACCACTACCGAGAGCTACAACAAGGTGATT
ATCGCCCTTGCGAAAACTAATCGTTCCTTCCATCCGTATGCGTCGTCTTC
CTCCTTTCAGCGTTTTCCTCATCCTTGTCCCCCTTCAGCGGACAAGGACG
GACATGCCATAAGCGCTCCTACTGCTGCAGTTGATGCTGAAGCTGATGCC
GCCTCTCCTATGGACACCACAGCCGCGGCGCGCGAAGTCCTTGCACGCAT
GAATGCGAAAGAAATATTACCGGATCACGTGTCTTACTGTGCATTGCTTG
ACGTGTATGCCGAAGCCAACGACGTAAAGGGCGCAGTGGCCATGTTCTTT
GGTGAGATGTGTCAGATGGCCTCCCTGTGGCGGCCCCTCCGGCCCCAAGG
CGCAAAAACAGCCCCCACTGCATCATTGCGCGTGCTGGCATCGTCGTTTC
CCACCAATTTGACG
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Synonyms
Publications