jgi.p|Nanoce1779_2|578242, mRNA_1868 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578242
Unique NamemRNA_1868
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1673
Alignment locationscaffold_4:223264..224936 -

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Properties
Property NameValue
TranscriptId578328
TrackFilteredModels2
ProteinId578242
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:223264..224936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578242gene_1868Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578242mRNA_1868-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1868CDS_1868Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1868 ID=mRNA_1868|Name=jgi.p|Nanoce1779_2|578242|organism=Nannochloropsis oceanica|type=mRNA|length=1673bp
TGGGGAGGGAAGGGGGGGGAGAGGGAGGAAAGAGTGGAATCATGCCGACG
GATGTGGCATTTGGGACGTTGATGAAAGCGTTTGCAAGGGTGGGTGAGTG
GAGGAAAGTCTTGATGTGTGTGGAAGGGATGCATGAGCTTGGCATCACGG
ACGAGAGGGAGGTGTGTTATGCCTTAGCGGCGTATGCCTGCGGGAAGGCG
GGGAGGTGGAGGGAGGTAGTGGGGCTGGTGGATGGGTTGAAAGAAAGGGA
AGGAGGGGTGAGGACTCTCAAGACGTACATCTTTGCCATGCATACCTGCG
GGAAGGCGGGAAGGTACGGGGAGGCAAGGCGGTTGTTGGAGGAAGTCCAG
GGGAGGGGGGACTTGATGGAGGGCATGGATGCCTACGCGTATAATCTGGC
CATGCATATATGTGCGCGGAATGGGGATCAGGGAGGGGCACTGCGTTGGT
GGGGCATGATGAAGGAGGCAAGGCGAGAGAGAGGGCTGGATAACTTTAAT
GTGGGCGCGTTGTTGACGGCGTTTGGGGCCGAAGGACAGTGGGAGGAAGG
GCTGGCGTTTGTTGAAGAGGTGGTGTTGTCTACTGGACGCCCTGTGCCCG
ACGCGGCCTTGGCCTTATTGGCTCTGCGGGCGGCAAAGGCTGGACGGGGA
GAGGAGGTGGTGGAGAGAGTGTTGGAGCTGTTGTCGAAGCATCAGCAGTC
GATCCCTTCGTTTCTGCATGGAGCCATGTGCTTGGCGTTGGCGGAGAGCG
GACAGTATGCGAAGGGGTTAGGGATGGCACTTGCCGAAGCCCCGCGCAAG
GAACAGCTGCGGTCGGCTGGAATGGGAGAAGAGGAGTGGCGGGAGAAAGT
AAAGGAGAAGGAAGAGGGGGAGGAAGGGGAGGAGAGCATGGATGACTACG
TCAGGACGCAGTTGGCGTTTGTGCAGCTCAAGCAGACCCCGTGGCCGGTG
GCCTGGTGTTTGGTGGACGGTCTGGAGGCGCAGGGGCTTCTCCATTCAAC
CGCTGTGGAGGTGGCGACAGAGGCATTGGCGAGGAAGGACGGCTATGAGC
TGTTTGCGTGTGGGTTGGAGAGGCATCGAGGGAGGGCGTGGCGGGAGGCG
GAAGTTGTGGCGGACGAGAGCAGCAGTGACGCCCATATCAGCAGCAGCCG
CAGCTTGAATGAGGAAGGGGCGAATAGCCAAGAGGAGGACGAGGAAGAAA
GGAGTAATGATGAAGAGGAAGCCGTGCGATGGGCCATGGTGCTGAATCCT
AGAGCAGCACCCATTCCGTCGCGCTCCTCGCCTTCATCCCCCTCGTCCTG
CTCCATGTCCTATATCGACAGGCACCACTCCCGCCACGCCGAGCATGGCT
GGGCTGCAGCAGCAGCAGCGGCCTTCTCATCCTTTTCCGGACCTTGGCGG
TAAAGAGGCCAAGAAAGATGAAAGCAGGGATATGGAGCAATCATCTGGAA
ACAGATAGTCCCTATAAATGGATGTAGAGTACCGGACGAAAGGATCAGCG
AGAGGGTGCGTGGAAGAAGATTTGTACAGGTCGACAGCGATGTGGCGGCA
GCAATGCGTGGCCGCACTCCTTGTGAAGATAACGCTTATAGGGTAAAATA
TACAACGGGACTTCAATACGTCGGAAGGAAAGAAAGAAAGAAAAAATCGA
AAAATCGATCAAATGACCAGACA
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protein sequence of jgi.p|Nanoce1779_2|578242

>mRNA_1868-protein ID=mRNA_1868-protein|Name=jgi.p|Nanoce1779_2|578242|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MPTDVAFGTLMKAFARVGEWRKVLMCVEGMHELGITDEREVCYALAAYAC
GKAGRWREVVGLVDGLKEREGGVRTLKTYIFAMHTCGKAGRYGEARRLLE
EVQGRGDLMEGMDAYAYNLAMHICARNGDQGGALRWWGMMKEARRERGLD
NFNVGALLTAFGAEGQWEEGLAFVEEVVLSTGRPVPDAALALLALRAAKA
GRGEEVVERVLELLSKHQQSIPSFLHGAMCLALAESGQYAKGLGMALAEA
PRKEQLRSAGMGEEEWREKVKEKEEGEEGEESMDDYVRTQLAFVQLKQTP
WPVAWCLVDGLEAQGLLHSTAVEVATEALARKDGYELFACGLERHRGRAW
REAEVVADESSSDAHISSSRSLNEEGANSQEEDEEERSNDEEEAVRWAMV
LNPRAAPIPSRSSPSSPSSCSMSYIDRHHSRHAEHGWAAAAAAAFSSFSG
PWR*
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mRNA from alignment at scaffold_4:223264..224936-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1868 ID=mRNA_1868|Name=jgi.p|Nanoce1779_2|578242|organism=Nannochloropsis oceanica|type=mRNA|length=1673bp|location=Sequence derived from alignment at scaffold_4:223264..224936- (Nannochloropsis oceanica)
TGGGGAGGGAAGGGGGGGGAGAGGGAGGAAAGAGTGGAATCATGCCGACG
GATGTGGCATTTGGGACGTTGATGAAAGCGTTTGCAAGGGTGGGTGAGTG
GAGGAAAGTCTTGATGTGTGTGGAAGGGATGCATGAGCTTGGCATCACGG
ACGAGAGGGAGGTGTGTTATGCCTTAGCGGCGTATGCCTGCGGGAAGGCG
GGGAGGTGGAGGGAGGTAGTGGGGCTGGTGGATGGGTTGAAAGAAAGGGA
AGGAGGGGTGAGGACTCTCAAGACGTACATCTTTGCCATGCATACCTGCG
GGAAGGCGGGAAGGTACGGGGAGGCAAGGCGGTTGTTGGAGGAAGTCCAG
GGGAGGGGGGACTTGATGGAGGGCATGGATGCCTACGCGTATAATCTGGC
CATGCATATATGTGCGCGGAATGGGGATCAGGGAGGGGCACTGCGTTGGT
GGGGCATGATGAAGGAGGCAAGGCGAGAGAGAGGGCTGGATAACTTTAAT
GTGGGCGCGTTGTTGACGGCGTTTGGGGCCGAAGGACAGTGGGAGGAAGG
GCTGGCGTTTGTTGAAGAGGTGGTGTTGTCTACTGGACGCCCTGTGCCCG
ACGCGGCCTTGGCCTTATTGGCTCTGCGGGCGGCAAAGGCTGGACGGGGA
GAGGAGGTGGTGGAGAGAGTGTTGGAGCTGTTGTCGAAGCATCAGCAGTC
GATCCCTTCGTTTCTGCATGGAGCCATGTGCTTGGCGTTGGCGGAGAGCG
GACAGTATGCGAAGGGGTTAGGGATGGCACTTGCCGAAGCCCCGCGCAAG
GAACAGCTGCGGTCGGCTGGAATGGGAGAAGAGGAGTGGCGGGAGAAAGT
AAAGGAGAAGGAAGAGGGGGAGGAAGGGGAGGAGAGCATGGATGACTACG
TCAGGACGCAGTTGGCGTTTGTGCAGCTCAAGCAGACCCCGTGGCCGGTG
GCCTGGTGTTTGGTGGACGGTCTGGAGGCGCAGGGGCTTCTCCATTCAAC
CGCTGTGGAGGTGGCGACAGAGGCATTGGCGAGGAAGGACGGCTATGAGC
TGTTTGCGTGTGGGTTGGAGAGGCATCGAGGGAGGGCGTGGCGGGAGGCG
GAAGTTGTGGCGGACGAGAGCAGCAGTGACGCCCATATCAGCAGCAGCCG
CAGCTTGAATGAGGAAGGGGCGAATAGCCAAGAGGAGGACGAGGAAGAAA
GGAGTAATGATGAAGAGGAAGCCGTGCGATGGGCCATGGTGCTGAATCCT
AGAGCAGCACCCATTCCGTCGCGCTCCTCGCCTTCATCCCCCTCGTCCTG
CTCCATGTCCTATATCGACAGGCACCACTCCCGCCACGCCGAGCATGGCT
GGGCTGCAGCAGCAGCAGCGGCCTTCTCATCCTTTTCCGGACCTTGGCGG
TAAAGAGGCCAAGAAAGATGAAAGCAGGGATATGGAGCAATCATCTGGAA
ACAGATAGTCCCTATAAATGGATGTAGAGTACCGGACGAAAGGATCAGCG
AGAGGGTGCGTGGAAGAAGATTTGTACAGGTCGACAGCGATGTGGCGGCA
GCAATGCGTGGCCGCACTCCTTGTGAAGATAACGCTTATAGGGTAAAATA
TACAACGGGACTTCAATACGTCGGAAGGAAAGAAAGAAAGAAAAAATCGA
AAAATCGATCAAATGACCAGACA
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Coding sequence (CDS) from alignment at scaffold_4:223264..224936-

>mRNA_1868 ID=mRNA_1868|Name=jgi.p|Nanoce1779_2|578242|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_4:223264..224936- (Nannochloropsis oceanica)
ATGCCGACGGATGTGGCATTTGGGACGTTGATGAAAGCGTTTGCAAGGGT
GGGTGAGTGGAGGAAAGTCTTGATGTGTGTGGAAGGGATGCATGAGCTTG
GCATCACGGACGAGAGGGAGGTGTGTTATGCCTTAGCGGCGTATGCCTGC
GGGAAGGCGGGGAGGTGGAGGGAGGTAGTGGGGCTGGTGGATGGGTTGAA
AGAAAGGGAAGGAGGGGTGAGGACTCTCAAGACGTACATCTTTGCCATGC
ATACCTGCGGGAAGGCGGGAAGGTACGGGGAGGCAAGGCGGTTGTTGGAG
GAAGTCCAGGGGAGGGGGGACTTGATGGAGGGCATGGATGCCTACGCGTA
TAATCTGGCCATGCATATATGTGCGCGGAATGGGGATCAGGGAGGGGCAC
TGCGTTGGTGGGGCATGATGAAGGAGGCAAGGCGAGAGAGAGGGCTGGAT
AACTTTAATGTGGGCGCGTTGTTGACGGCGTTTGGGGCCGAAGGACAGTG
GGAGGAAGGGCTGGCGTTTGTTGAAGAGGTGGTGTTGTCTACTGGACGCC
CTGTGCCCGACGCGGCCTTGGCCTTATTGGCTCTGCGGGCGGCAAAGGCT
GGACGGGGAGAGGAGGTGGTGGAGAGAGTGTTGGAGCTGTTGTCGAAGCA
TCAGCAGTCGATCCCTTCGTTTCTGCATGGAGCCATGTGCTTGGCGTTGG
CGGAGAGCGGACAGTATGCGAAGGGGTTAGGGATGGCACTTGCCGAAGCC
CCGCGCAAGGAACAGCTGCGGTCGGCTGGAATGGGAGAAGAGGAGTGGCG
GGAGAAAGTAAAGGAGAAGGAAGAGGGGGAGGAAGGGGAGGAGAGCATGG
ATGACTACGTCAGGACGCAGTTGGCGTTTGTGCAGCTCAAGCAGACCCCG
TGGCCGGTGGCCTGGTGTTTGGTGGACGGTCTGGAGGCGCAGGGGCTTCT
CCATTCAACCGCTGTGGAGGTGGCGACAGAGGCATTGGCGAGGAAGGACG
GCTATGAGCTGTTTGCGTGTGGGTTGGAGAGGCATCGAGGGAGGGCGTGG
CGGGAGGCGGAAGTTGTGGCGGACGAGAGCAGCAGTGACGCCCATATCAG
CAGCAGCCGCAGCTTGAATGAGGAAGGGGCGAATAGCCAAGAGGAGGACG
AGGAAGAAAGGAGTAATGATGAAGAGGAAGCCGTGCGATGGGCCATGGTG
CTGAATCCTAGAGCAGCACCCATTCCGTCGCGCTCCTCGCCTTCATCCCC
CTCGTCCTGCTCCATGTCCTATATCGACAGGCACCACTCCCGCCACGCCG
AGCATGGCTGGGCTGCAGCAGCAGCAGCGGCCTTCTCATCCTTTTCCGGA
CCTTGGCGGTAA
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Synonyms
Publications