jgi.p|Nanoce1779_2|578241, mRNA_1867 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578241
Unique NamemRNA_1867
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length844
Alignment locationscaffold_4:222411..223254 +

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Properties
Property NameValue
TranscriptId578327
TrackFilteredModels2
ProteinId578241
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:222411..223254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578241gene_1867Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578241mRNA_1867-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1867CDS_1867Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1867 ID=mRNA_1867|Name=jgi.p|Nanoce1779_2|578241|organism=Nannochloropsis oceanica|type=mRNA|length=844bp
CAGGCCTCTCGCTTCACAATGGCGCCATCTAACCAACAAGAACCCACGTC
CGTGCCGCCACATGGTGCCTGCTCCTCAACCACGCCTCCCACCACCATCA
TCACCCCAGAAAGAAGACGCGCCCCACTTCCATTTCCCTTCCTCCTCGTC
GTCTCTCTGGCCCTCCTGCTCCCTGGGCCTCTTCACGCTATTCAGTTGGA
TGTGGAGCCCTACAGCACTCGCTGCATCTCTGACGACTACGCATCCGACG
AGGACTCAACCATCAAGTTGCGGGCAGTTGGTCGCGTCCAAGAAAACGTC
CGGGCCACGGTCTCCAATCCTGACGGCCAGTCCGTGTGGGGTAGCTACAT
CACCGCTCAAACGCAAAATGTGCCCGTGTCCGCAGATAATTTCGGTTTGT
ATCGCATTTGCTTCTCGAACGGCGGGTCAGCGGTGCAGCGGGTGGAGGTG
GGGTTGTTGGACCGAGCGGTGACTTTGGGCCAGAAATTCGATTCCGCCAA
GACCAAAGAGCACCTGCGGCCTTTGCAGCTCTTATTTCGCCGCGCGGAGT
TGACTGTGGCGGGGGTTAGCAAGGAATTGGACAGCGTCCGGCAAAGAGAG
GCGGTGTTGCGGGAAACCAGCGATTCGACGAATACCCGCATTCAGTGGTT
TTCCATTTTTTCGATAGTTATTCTATTGGCCGTGAGCTTATGGCAGGTGA
CTTTCCTCAAGTCCTTCTTTCGCTCTAAGAAGCTTTTGTAGGAGTAAAAA
TGGCGAACATAGGCAGTAGATACAGAGAAGGGGAGGACAAGGCAAACACC
CCCCCCCGCAAAATACGCATACTGGGAAATTAGTGTGATGCGAC
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protein sequence of jgi.p|Nanoce1779_2|578241

>mRNA_1867-protein ID=mRNA_1867-protein|Name=jgi.p|Nanoce1779_2|578241|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MAPSNQQEPTSVPPHGACSSTTPPTTIITPERRRAPLPFPFLLVVSLALL
LPGPLHAIQLDVEPYSTRCISDDYASDEDSTIKLRAVGRVQENVRATVSN
PDGQSVWGSYITAQTQNVPVSADNFGLYRICFSNGGSAVQRVEVGLLDRA
VTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRET
SDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL*
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mRNA from alignment at scaffold_4:222411..223254+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1867 ID=mRNA_1867|Name=jgi.p|Nanoce1779_2|578241|organism=Nannochloropsis oceanica|type=mRNA|length=844bp|location=Sequence derived from alignment at scaffold_4:222411..223254+ (Nannochloropsis oceanica)
CAGGCCTCTCGCTTCACAATGGCGCCATCTAACCAACAAGAACCCACGTC
CGTGCCGCCACATGGTGCCTGCTCCTCAACCACGCCTCCCACCACCATCA
TCACCCCAGAAAGAAGACGCGCCCCACTTCCATTTCCCTTCCTCCTCGTC
GTCTCTCTGGCCCTCCTGCTCCCTGGGCCTCTTCACGCTATTCAGTTGGA
TGTGGAGCCCTACAGCACTCGCTGCATCTCTGACGACTACGCATCCGACG
AGGACTCAACCATCAAGTTGCGGGCAGTTGGTCGCGTCCAAGAAAACGTC
CGGGCCACGGTCTCCAATCCTGACGGCCAGTCCGTGTGGGGTAGCTACAT
CACCGCTCAAACGCAAAATGTGCCCGTGTCCGCAGATAATTTCGGTTTGT
ATCGCATTTGCTTCTCGAACGGCGGGTCAGCGGTGCAGCGGGTGGAGGTG
GGGTTGTTGGACCGAGCGGTGACTTTGGGCCAGAAATTCGATTCCGCCAA
GACCAAAGAGCACCTGCGGCCTTTGCAGCTCTTATTTCGCCGCGCGGAGT
TGACTGTGGCGGGGGTTAGCAAGGAATTGGACAGCGTCCGGCAAAGAGAG
GCGGTGTTGCGGGAAACCAGCGATTCGACGAATACCCGCATTCAGTGGTT
TTCCATTTTTTCGATAGTTATTCTATTGGCCGTGAGCTTATGGCAGGTGA
CTTTCCTCAAGTCCTTCTTTCGCTCTAAGAAGCTTTTGTAGGAGTAAAAA
TGGCGAACATAGGCAGTAGATACAGAGAAGGGGAGGACAAGGCAAACACC
CCCCCCCGCAAAATACGCATACTGGGAAATTAGTGTGATGCGAC
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Coding sequence (CDS) from alignment at scaffold_4:222411..223254+

>mRNA_1867 ID=mRNA_1867|Name=jgi.p|Nanoce1779_2|578241|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at scaffold_4:222411..223254+ (Nannochloropsis oceanica)
ATGGCGCCATCTAACCAACAAGAACCCACGTCCGTGCCGCCACATGGTGC
CTGCTCCTCAACCACGCCTCCCACCACCATCATCACCCCAGAAAGAAGAC
GCGCCCCACTTCCATTTCCCTTCCTCCTCGTCGTCTCTCTGGCCCTCCTG
CTCCCTGGGCCTCTTCACGCTATTCAGTTGGATGTGGAGCCCTACAGCAC
TCGCTGCATCTCTGACGACTACGCATCCGACGAGGACTCAACCATCAAGT
TGCGGGCAGTTGGTCGCGTCCAAGAAAACGTCCGGGCCACGGTCTCCAAT
CCTGACGGCCAGTCCGTGTGGGGTAGCTACATCACCGCTCAAACGCAAAA
TGTGCCCGTGTCCGCAGATAATTTCGGTTTGTATCGCATTTGCTTCTCGA
ACGGCGGGTCAGCGGTGCAGCGGGTGGAGGTGGGGTTGTTGGACCGAGCG
GTGACTTTGGGCCAGAAATTCGATTCCGCCAAGACCAAAGAGCACCTGCG
GCCTTTGCAGCTCTTATTTCGCCGCGCGGAGTTGACTGTGGCGGGGGTTA
GCAAGGAATTGGACAGCGTCCGGCAAAGAGAGGCGGTGTTGCGGGAAACC
AGCGATTCGACGAATACCCGCATTCAGTGGTTTTCCATTTTTTCGATAGT
TATTCTATTGGCCGTGAGCTTATGGCAGGTGACTTTCCTCAAGTCCTTCT
TTCGCTCTAAGAAGCTTTTGTAG
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Synonyms
Publications