jgi.p|Nanoce1779_2|563546, mRNA_1866 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563546
Unique NamemRNA_1866
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1215
Alignment locationscaffold_4:220267..221481 -

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Properties
Property NameValue
TranscriptId563632
TrackFilteredModels2
ProteinId563546
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:220267..221481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563546gene_1866Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1866CDS_1866Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563546mRNA_1866-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1866 ID=mRNA_1866|Name=jgi.p|Nanoce1779_2|563546|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
ATGACGAGTAAGGCTACGAACAGCAACAAAGGGAAGCGTACGGAACACAA
CTGCAGTAGTGGCATAGGCAGCTGCTGCAGCAGCCATAGCCAGCGCTTCG
GCTCGCGGTTTCCCGCGACAAGCACGACTAGCACCAGCGAGCCCGTGACC
TTCAGCATGCTACCTGGAGACATTCAGGCGCGCGTCCTTTTTTCTGGTTA
CTTCGACTCGCTTTTCGTGTTGAACCGCCTGTCCCTAGTGAGCAAGCACA
TGTACCACATGGCTTCGTCTTGCTACAAAGAAATGGACCTCTCTCGCCTC
CCTAAGCTCGGCATTGATGCCCTCAGCCACATAGAGTCTCGTTTCAAGGG
TATCCGCAAGCTGGACATGTCATTTTGTGACGCTGTGAATGACGAGGCGG
TTATAAATCTTTTTCCTTTGGAAGGGACACTCACCAGCCTTATTCTCCGG
GGGTGTCATGTCTCAGACATGGGCCTGGAAGCTATTGGAAAATTTACGCA
GTTGGAATGCCTGGATATTTCCAAGCAGTATGAAGAGCAGAGCTTAATTG
TGACGGATTATGGATTGGTGGCTTTGAGCAAGCTCCGACGGTTGCGGGAG
ATCTCTCTGGCGTGGAATAAGTGTGTCACGGATGACGGGGTAGCCTCTTT
GATTGGTGCGTCGCAAGGGGTCAAGCAGCTTCGCGTGTTAGACTTGTCGT
GCTGCATGGGGTTGACAGATGCGGTGTGTGAGTCATTGGTAGGACAGCCG
TTGGAGCGCTTGTCTTTTCTAGGTTGCCCCATGATCACGGACCAGAGCCT
GGGCATGCTCTTTGCCAGCGAGTCCCTCTCCGCGCCCTACTCGTACTACC
CCTACCATTATCCCGACCTTTCCCCCTCTCGCTCGTCACAATCTCTTCCC
GCCCTCCCTCTTACTCCTTCAGCTGTGTCTGCTGCAGGAAATACTCCGTT
TGCTGCTACCCCGATCGCTGCAGCTCTGACCCGCTCTTCCTCCTCGCCCT
TGCCCTCATCCTCTGCGGCGTCCTCATTCCCTACCAGCAGCATCACATCC
CTGTCGCTGGCACACTGTGAAGCACTAACGGACGTCGGAGTGGAAATCCT
GATGACGTTACCCAATCTGGTTGATTTGGACATGAGGGATTGTCGACGGC
TGTCGGAGGAGGGAAGAAGCAAGCTACAGAAGTGGCTACCAGTGGCGTCG
GTGGGTTTGTCGTAA
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protein sequence of jgi.p|Nanoce1779_2|563546

>mRNA_1866-protein ID=mRNA_1866-protein|Name=jgi.p|Nanoce1779_2|563546|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MTSKATNSNKGKRTEHNCSSGIGSCCSSHSQRFGSRFPATSTTSTSEPVT
FSMLPGDIQARVLFSGYFDSLFVLNRLSLVSKHMYHMASSCYKEMDLSRL
PKLGIDALSHIESRFKGIRKLDMSFCDAVNDEAVINLFPLEGTLTSLILR
GCHVSDMGLEAIGKFTQLECLDISKQYEEQSLIVTDYGLVALSKLRRLRE
ISLAWNKCVTDDGVASLIGASQGVKQLRVLDLSCCMGLTDAVCESLVGQP
LERLSFLGCPMITDQSLGMLFASESLSAPYSYYPYHYPDLSPSRSSQSLP
ALPLTPSAVSAAGNTPFAATPIAAALTRSSSSPLPSSSAASSFPTSSITS
LSLAHCEALTDVGVEILMTLPNLVDLDMRDCRRLSEEGRSKLQKWLPVAS
VGLS*
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mRNA from alignment at scaffold_4:220267..221481-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1866 ID=mRNA_1866|Name=jgi.p|Nanoce1779_2|563546|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp|location=Sequence derived from alignment at scaffold_4:220267..221481- (Nannochloropsis oceanica)
ATGACGAGTAAGGCTACGAACAGCAACAAAGGGAAGCGTACGGAACACAA
CTGCAGTAGTGGCATAGGCAGCTGCTGCAGCAGCCATAGCCAGCGCTTCG
GCTCGCGGTTTCCCGCGACAAGCACGACTAGCACCAGCGAGCCCGTGACC
TTCAGCATGCTACCTGGAGACATTCAGGCGCGCGTCCTTTTTTCTGGTTA
CTTCGACTCGCTTTTCGTGTTGAACCGCCTGTCCCTAGTGAGCAAGCACA
TGTACCACATGGCTTCGTCTTGCTACAAAGAAATGGACCTCTCTCGCCTC
CCTAAGCTCGGCATTGATGCCCTCAGCCACATAGAGTCTCGTTTCAAGGG
TATCCGCAAGCTGGACATGTCATTTTGTGACGCTGTGAATGACGAGGCGG
TTATAAATCTTTTTCCTTTGGAAGGGACACTCACCAGCCTTATTCTCCGG
GGGTGTCATGTCTCAGACATGGGCCTGGAAGCTATTGGAAAATTTACGCA
GTTGGAATGCCTGGATATTTCCAAGCAGTATGAAGAGCAGAGCTTAATTG
TGACGGATTATGGATTGGTGGCTTTGAGCAAGCTCCGACGGTTGCGGGAG
ATCTCTCTGGCGTGGAATAAGTGTGTCACGGATGACGGGGTAGCCTCTTT
GATTGGTGCGTCGCAAGGGGTCAAGCAGCTTCGCGTGTTAGACTTGTCGT
GCTGCATGGGGTTGACAGATGCGGTGTGTGAGTCATTGGTAGGACAGCCG
TTGGAGCGCTTGTCTTTTCTAGGTTGCCCCATGATCACGGACCAGAGCCT
GGGCATGCTCTTTGCCAGCGAGTCCCTCTCCGCGCCCTACTCGTACTACC
CCTACCATTATCCCGACCTTTCCCCCTCTCGCTCGTCACAATCTCTTCCC
GCCCTCCCTCTTACTCCTTCAGCTGTGTCTGCTGCAGGAAATACTCCGTT
TGCTGCTACCCCGATCGCTGCAGCTCTGACCCGCTCTTCCTCCTCGCCCT
TGCCCTCATCCTCTGCGGCGTCCTCATTCCCTACCAGCAGCATCACATCC
CTGTCGCTGGCACACTGTGAAGCACTAACGGACGTCGGAGTGGAAATCCT
GATGACGTTACCCAATCTGGTTGATTTGGACATGAGGGATTGTCGACGGC
TGTCGGAGGAGGGAAGAAGCAAGCTACAGAAGTGGCTACCAGTGGCGTCG
GTGGGTTTGTCGTAA
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Coding sequence (CDS) from alignment at scaffold_4:220267..221481-

>mRNA_1866 ID=mRNA_1866|Name=jgi.p|Nanoce1779_2|563546|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_4:220267..221481- (Nannochloropsis oceanica)
ATGACGAGTAAGGCTACGAACAGCAACAAAGGGAAGCGTACGGAACACAA
CTGCAGTAGTGGCATAGGCAGCTGCTGCAGCAGCCATAGCCAGCGCTTCG
GCTCGCGGTTTCCCGCGACAAGCACGACTAGCACCAGCGAGCCCGTGACC
TTCAGCATGCTACCTGGAGACATTCAGGCGCGCGTCCTTTTTTCTGGTTA
CTTCGACTCGCTTTTCGTGTTGAACCGCCTGTCCCTAGTGAGCAAGCACA
TGTACCACATGGCTTCGTCTTGCTACAAAGAAATGGACCTCTCTCGCCTC
CCTAAGCTCGGCATTGATGCCCTCAGCCACATAGAGTCTCGTTTCAAGGG
TATCCGCAAGCTGGACATGTCATTTTGTGACGCTGTGAATGACGAGGCGG
TTATAAATCTTTTTCCTTTGGAAGGGACACTCACCAGCCTTATTCTCCGG
GGGTGTCATGTCTCAGACATGGGCCTGGAAGCTATTGGAAAATTTACGCA
GTTGGAATGCCTGGATATTTCCAAGCAGTATGAAGAGCAGAGCTTAATTG
TGACGGATTATGGATTGGTGGCTTTGAGCAAGCTCCGACGGTTGCGGGAG
ATCTCTCTGGCGTGGAATAAGTGTGTCACGGATGACGGGGTAGCCTCTTT
GATTGGTGCGTCGCAAGGGGTCAAGCAGCTTCGCGTGTTAGACTTGTCGT
GCTGCATGGGGTTGACAGATGCGGTGTGTGAGTCATTGGTAGGACAGCCG
TTGGAGCGCTTGTCTTTTCTAGGTTGCCCCATGATCACGGACCAGAGCCT
GGGCATGCTCTTTGCCAGCGAGTCCCTCTCCGCGCCCTACTCGTACTACC
CCTACCATTATCCCGACCTTTCCCCCTCTCGCTCGTCACAATCTCTTCCC
GCCCTCCCTCTTACTCCTTCAGCTGTGTCTGCTGCAGGAAATACTCCGTT
TGCTGCTACCCCGATCGCTGCAGCTCTGACCCGCTCTTCCTCCTCGCCCT
TGCCCTCATCCTCTGCGGCGTCCTCATTCCCTACCAGCAGCATCACATCC
CTGTCGCTGGCACACTGTGAAGCACTAACGGACGTCGGAGTGGAAATCCT
GATGACGTTACCCAATCTGGTTGATTTGGACATGAGGGATTGTCGACGGC
TGTCGGAGGAGGGAAGAAGCAAGCTACAGAAGTGGCTACCAGTGGCGTCG
GTGGGTTTGTCGTAA
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Synonyms
Publications