jgi.p|Nanoce1779_2|659667, mRNA_1865 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|659667
Unique Name	mRNA_1865
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1756
Alignment location	scaffold_4:218258..220178 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	659753
Track	FilteredModels2
ProteinId	659667

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:218258..220178 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|659667	gene_1865	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|659667	mRNA_1865-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1865	CDS_1865	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:218258..220178+
coding sequence from alignment at scaffold_4:218258..220178+

mRNA sequence

>mRNA_1865 ID=mRNA_1865|Name=jgi.p|Nanoce1779_2|659667|organism=Nannochloropsis oceanica|type=mRNA|length=1756bp
GGTGGTGGTAGGGAGGGAGGAAAGATGGGGAGGAGGAAAGGAGGGAGGGA
GGAGGAGGAGGAAGACGAGAAGGTAACGGCGTTGGTGATTAGGGAGCAAT
TGTCGAGCTTGAGGGATTTGAAGCCGGCTTTCCACAAGACGTGGGGCAAT
GCCACGACGGAGTGGAAGGTGCGAGGGGAGACGTACATGAGTGACGGGAT
CAAGGTGGGAGGGAAGGCGGCGCAGCCTTTGTGTGAGCTGGTGCACATGG
AGCTTCTAGATGTCGAAAGTGCAGGGCTGTCGCCAAGGGCAGATCATGTG
ACGGGTCTTTTTCAGGGGTTGGATGGTGTGTACACTCGATGCCAGCTTCT
GGCTTCGCGGCCCCCGCCCTTTCTTTTAATTTTGAATTTTCAAGTACCCG
GTAACCCGCCTTGTAGTATGATGTGTTATTTTGCTTTGAGTGGGGCGGCG
AGGAAAGGGGTAGAGAGGGCACAGATGAGGGTAAGGAGAAGGAGGGCAAG
GGAGGCGGCTGCTGAGGAAAAGGGGGAGGAGGAAAAGGGGGAGGAGGACG
AAGAAGAGGACGAGGAAGAGGAAGAGGAAGTAGAGATGGACGAGGAGCGA
ATGAGGACGAAGCAGCTGGAGAAGAAGTTTTTGATGCTCCTGGCAGAGTT
CCTGGAGGGGAGCGACGCGGAAAGAAATACCCGATTCAAGCTCATTCCGT
CGATGGTAGAGGGGCCTCGGATGATAAGTTTTGCTGTGGGTAACAAGCCA
GTGTTGCTGGGGAAGAAGCTTACGCAGCGGTATTGGTCTGGTCCAGGGTA
CTTAGAGGTGGGCATCGATATTGGGAGTTCAATTATGGCATCACGGACCT
TGGGATTGGTGAGGGACTATAGCAAGAATATCGTGGTGGAGTTGGCGGTG
TTGATTCAGGGGGAGGAGGAGAGGGAGCTGCCTGAGAAGGTGTTGGGGTC
GTTGCGGTGTTCGAGGTTGGATTGGGGGCTGGCGGAAAGCTTGAAGGAGA
GGCTTGAGGCGGCGCGGGCGATGGCAGCCCCCACTGCCGTATCCCCCGTG
CCGTCGGTCGAGTCGCCCGAAGAGGGAGGGAGGGAAAGCGTGTGATGATA
TATATAGACTGTGTCGTGTGCGTTGCACATAGCTAGGCTTAATTCTTTCT
CATGTGTGTGACTATGTTTCCCCCTTATCGTGACCCAAGGGAAAGTATAG
GGAAGCAGCACATTGAAGACGAGGGGAACCCGCGATTCTGATTTTGATAA
GGTGGCATGAATAGCAGAGTGGGCATATTGTACCGGAGGCAAAAGAATGC
AACAATCAACAAATTCAAAAGAGAAATAAACTTGTGATGAGAGAAAATTA
CTGGATGTGGTTACACTTAAATCGCTTGTTCATGGCATTTAGAAGCGCCA
TCAACCGATCTCTATTTGTTGCAATGCGTCTGTGCCGCGCCTTCGCAATT
GTCGAGAGCGCTCTGTATCTACCGCTATGCTGTTGATGTCGTAATTTATT
AGGTGCCCCCCTCCCCCCCTCTGCCAAGACAAGTAAGAAAAGTCTGCATG
TAGGCCAATGGATGTTTCGGGGCTTCCATTTTTACTTCTGTCGCCTTGAA
AGCGAATGTGGCCCCTCCACCCTGATACCTTCATTGCTCTCAACATCATT
TCCCGCCATCTCCACATATGTAGGTATAAAGTGTAATGCTTGCGTAAAAC
TACCTATCTAACTATACTCTCCTATCGTCCTCATTCCCCCCTCTACATTT
CCGTCC

protein sequence of jgi.p|Nanoce1779_2|659667

>mRNA_1865-protein ID=mRNA_1865-protein|Name=jgi.p|Nanoce1779_2|659667|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MGRRKGGREEEEEDEKVTALVIREQLSSLRDLKPAFHKTWGNATTEWKVR
GETYMSDGIKVGGKAAQPLCELVHMELLDVESAGLSPRADHVTGLFQGLD
GVYTRCQLLASRPPPFLLILNFQVPGNPPCSMMCYFALSGAARKGVERAQ
MRVRRRRAREAAAEEKGEEEKGEEDEEEDEEEEEEVEMDEERMRTKQLEK
KFLMLLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNKPVLLGKKLT
QRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEER
ELPEKVLGSLRCSRLDWGLAESLKERLEAARAMAAPTAVSPVPSVESPEE
GGRESV*

mRNA from alignment at scaffold_4:218258..220178+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1865 ID=mRNA_1865|Name=jgi.p|Nanoce1779_2|659667|organism=Nannochloropsis oceanica|type=mRNA|length=1921bp|location=Sequence derived from alignment at scaffold_4:218258..220178+ (Nannochloropsis oceanica)
GGTGGTGGTAGGGAGGGAGGAAAGATGGGGAGGAGGAAAGGAGGGAGGGA
GGAGGAGGAGGAAGACGAGAAGGTAACGGCGTTGGTGATTAGGGAGCAAT
TGTCGAGCTTGAGGGATTTGAAGCCGGCTTTCCACAAGACGTGGGGCAAT
GCCACGACGGAGTGGAAGGTGCGAGGGGAGACGTACATGAGTGACGGGAT
CAAGGTGGGAGGGAAGGCGGCGCAGCCTTTGTGTGAGCTGGTGCACATGG
AGCTTCTAGATGTCGAAAGTGCAGGGCTGTCGCCAAGGGCAGATCATGTG
ACGGGTCTTTTTCAGGGGTTGGATGGTGTGTACACTCGATGCCAGCTTCT
GGCTTCGCGGCCCCCGCCCTTTCTTTTAATTTTGAATTTTCAAGTACCCG
GTAACCCGCCTTGTAGTATGATGTGTTATTTTGCTTTGAGTGGGGCGGCG
AGGAAAGGGGTAGAGAGGGCACAGATGAGGGTAAGGAGAAGGAGGGCAAG
GGAGGCGGCTGCTGTAGAGGCTGCGGCGGAGCAGCAAAGGAGGGAAGGTG
ATGAGGGGGGAGGGTTGCAGGGGAGAGCGGAAGCGAAAGGCTTCCGGGCG
GATTGGGAGGAGATGCACGCCGCTGTTACGGTCGCTGCAGAGGGACAGGT
AGTGTCAGTGGAGGAGGAAAAGGGGGAGGAGGAAAAGGGGGAGGAGGAAA
AGGGGGAGGAGGACGAAGAAGAGGACGAGGAAGAGGAAGAGGAAGTAGAG
ATGGACGAGGAGCGAATGAGGACGAAGCAGCTGGAGAAGAAGTTTTTGAT
GCTCCTGGCAGAGTTCCTGGAGGGGAGCGACGCGGAAAGAAATACCCGAT
TCAAGCTCATTCCGTCGATGGTAGAGGGGCCTCGGATGATAAGTTTTGCT
GTGGGTAACAAGCCAGTGTTGCTGGGGAAGAAGCTTACGCAGCGGTATTG
GTCTGGTCCAGGGTACTTAGAGGTGGGCATCGATATTGGGAGTTCAATTA
TGGCATCACGGACCTTGGGATTGGTGAGGGACTATAGCAAGAATATCGTG
GTGGAGTTGGCGGTGTTGATTCAGGGGGAGGAGGAGAGGGAGCTGCCTGA
GAAGGTGTTGGGGTCGTTGCGGTGTTCGAGGTTGGATTGGGGGCTGGCGG
AAAGCTTGAAGGAGAGGCTTGAGGCGGCGCGGGCGATGGCAGCCCCCACT
GCCGTATCCCCCGTGCCGTCGGTCGAGTCGCCCGAAGAGGGAGGGAGGGA
AAGCGTGTGATGATATATATAGACTGTGTCGTGTGCGTTGCACATAGCTA
GGCTTAATTCTTTCTCATGTGTGTGACTATGTTTCCCCCTTATCGTGACC
CAAGGGAAAGTATAGGGAAGCAGCACATTGAAGACGAGGGGAACCCGCGA
TTCTGATTTTGATAAGGTGGCATGAATAGCAGAGTGGGCATATTGTACCG
GAGGCAAAAGAATGCAACAATCAACAAATTCAAAAGAGAAATAAACTTGT
GATGAGAGAAAATTACTGGATGTGGTTACACTTAAATCGCTTGTTCATGG
CATTTAGAAGCGCCATCAACCGATCTCTATTTGTTGCAATGCGTCTGTGC
CGCGCCTTCGCAATTGTCGAGAGCGCTCTGTATCTACCGCTATGCTGTTG
ATGTCGTAATTTATTAGGTGCCCCCCTCCCCCCCTCTGCCAAGACAAGTA
AGAAAAGTCTGCATGTAGGCCAATGGATGTTTCGGGGCTTCCATTTTTAC
TTCTGTCGCCTTGAAAGCGAATGTGGCCCCTCCACCCTGATACCTTCATT
GCTCTCAACATCATTTCCCGCCATCTCCACATATGTAGGTATAAAGTGTA
ATGCTTGCGTAAAACTACCTATCTAACTATACTCTCCTATCGTCCTCATT
CCCCCCTCTACATTTCCGTCC

Coding sequence (CDS) from alignment at scaffold_4:218258..220178+

>mRNA_1865 ID=mRNA_1865|Name=jgi.p|Nanoce1779_2|659667|organism=Nannochloropsis oceanica|type=CDS|length=2142bp|location=Sequence derived from alignment at scaffold_4:218258..220178+ (Nannochloropsis oceanica)
ATGGGGAGGAGGAAAGGAGGGAGGGAGGAGGAGGAGGAAGACGAGAAGGT
AACGGCGTTGGTGATTAGGGAGCAATTGTCGAGCTTGAGGGATTTGAAGC
CGGCTTTCCACAAGACGTGGGGCAATGCCACGACGGAGTGGAAGGTGCGA
GGGGAGACGTACATGAGTGACGGGATCAAGGTGGGAGGGAAGGCGGCGCA
GCCTTTGTGTGAGCTGGTGCACATGGAGCTTCTAGATGTCGAAAGTGCAG
GGCTGTCGCCAAGGGCAGATCATGTGACGGGTCTTTTTCAGGGGTTGGAT
GGTGTGTACACTCGATGCCAGCTTCTGGCTTCGCGGCCCCCGCCCTTTCT
TTTAATTTTGAATTTTCAAGTACCCGGTAACCCGCCTTGTAGTATGATGT
GTTATTTTGCTTTGAGTGGGGCGGCGAGGAAAGGGGTAGAGAGGGCACAG
ATGAGGGTAAGGAGAAGGAGGGCAAGGGAGGCGGCTGCTGAGGAAAAGGG
GGAGGAGGAAAAGGGGGAGGAGGACGAAGAAGAGGACGAGGAAGAGGAAG
AGGAAGTAGAGATGGACGAGGAGCGAATGAGGACGAAGCAGCTGGAGAAG
AAGTTTTTGATGCTCCTGGCAGAGTTCCTGGAGGGGAGCGACGCGGAAAG
AAATACCCGATTCAAGCTCATTCCGTCGATGGTAGAGGGGCCTCGGATGA
TAAGTTTTGCTGTGGGTAACAAGCCAGTGTTGCTGGGGAAGAAGCTTACG
CAGCGGTATTGGTCTGGTCCAGGGTACTTAGAGGTGGGCATCGATATTGG
GAGTTCAATTATGGCATCACGGACCTTGGGATTGGTGAGGGACTATAGCA
AGAATATCGTGGTGGAGTTGGCGGTGTTGATTCAGGGGGAGGAGGAGAGG
GAGCTGCCTGAGAAGGTGTTGGGGTCGTTGCGGTGTTCGAGGTTGGATTG
GGGGCTGGCGGAAAGCTTGAAGGAGAGGCTTGAGGCGGCGCGGGCGATGG
CAGCCCCCACTGCCGTATCCCCCGTGCCGTCGGTCGAGTCGCCCGAAGAG
GGAGGGAGGGAAAGCGTGTGAATGGGGAGGAGGAAAGGAGGGAGGGAGGA
GGAGGAGGAAGACGAGAAGGTAACGGCGTTGGTGATTAGGGAGCAATTGT
CGAGCTTGAGGGATTTGAAGCCGGCTTTCCACAAGACGTGGGGCAATGCC
ACGACGGAGTGGAAGGTGCGAGGGGAGACGTACATGAGTGACGGGATCAA
GGTGGGAGGGAAGGCGGCGCAGCCTTTGTGTGAGCTGGTGCACATGGAGC
TTCTAGATGTCGAAAGTGCAGGGCTGTCGCCAAGGGCAGATCATGTGACG
GGTCTTTTTCAGGGGTTGGATGGTGTGTACACTCGATGCCAGCTTCTGGC
TTCGCGGCCCCCGCCCTTTCTTTTAATTTTGAATTTTCAAGTACCCGGTA
ACCCGCCTTGTAGTATGATGTGTTATTTTGCTTTGAGTGGGGCGGCGAGG
AAAGGGGTAGAGAGGGCACAGATGAGGGTAAGGAGAAGGAGGGCAAGGGA
GGCGGCTGCTGAGGAAAAGGGGGAGGAGGAAAAGGGGGAGGAGGACGAAG
AAGAGGACGAGGAAGAGGAAGAGGAAGTAGAGATGGACGAGGAGCGAATG
AGGACGAAGCAGCTGGAGAAGAAGTTTTTGATGCTCCTGGCAGAGTTCCT
GGAGGGGAGCGACGCGGAAAGAAATACCCGATTCAAGCTCATTCCGTCGA
TGGTAGAGGGGCCTCGGATGATAAGTTTTGCTGTGGGTAACAAGCCAGTG
TTGCTGGGGAAGAAGCTTACGCAGCGGTATTGGTCTGGTCCAGGGTACTT
AGAGGTGGGCATCGATATTGGGAGTTCAATTATGGCATCACGGACCTTGG
GATTGGTGAGGGACTATAGCAAGAATATCGTGGTGGAGTTGGCGGTGTTG
ATTCAGGGGGAGGAGGAGAGGGAGCTGCCTGAGAAGGTGTTGGGGTCGTT
GCGGTGTTCGAGGTTGGATTGGGGGCTGGCGGAAAGCTTGAAGGAGAGGC
TTGAGGCGGCGCGGGCGATGGCAGCCCCCACTGCCGTATCCCCCGTGCCG
TCGGTCGAGTCGCCCGAAGAGGGAGGGAGGGAAAGCGTGTGA

Synonyms

Publications